Carg10222 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10222
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 51553 .. 53583 (+)
RNA-Seq Expression	Carg10222
Synteny	Carg10222

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGGGCTTAACTCTGTGACCCACGACGGCAGCGCCAGACCAGTCGCAACGAACCCTGTTCCCACGGTCTCGCGCCAATTCCCTTCTAACCGACGAACCAGGTAACTCCAGGCTTGTAGATTTGTGGCGCACCCAACCCCCGGTCTCGCAGCAAGAGCGACAACGGCAGATCCCACGGTGTTCCCCACCACGTCTACCACAGGCGGCTACAGAGTTTAGACCCGACCACGAACGACGCATTTCCGAACGATCTTAGCGAAGTCGAATCTCTTCGAATACAAGCAAGGACCCAAACTTCTTTCAAGGATCAGTAAGTAATGTATTTTCTTCTATTTTGCAATGATTGTGGTGTTTTTCTTCATCTCCTTCGTTATTTTCGATTGTGAATGAATTCAGATTGTATATTGAACTACTAGAAAGATGCAGAATGAAGGCCAAGTTTGCATGGAGAAGTTGGTGTTGTTTTCTTATAGCTTTAATTCGTTTAAGGGAAAATTTGAGCAGACTAATATTTTTTGCCTTCTTGAAATGTATTTTGATTTTTCCTCACAAAAGATGAAAACTATTGTAAAGACTATGAGGAACCAACTTAAGTTCGAAAATTGGAAACTAAAAGCCAAAAACTAAATGGTTATCGAGACCTTAGGAATGAGAATGAGAATCCTTGAATGATGGATGATTTGGGAATGAGATGCATGTATTTGTATAACTAAGTCAACTTCTTGAGAAGGAATTGATAGAAGTGGTATGGAGTGGTAAAATTTTAATTCCTAATAAGATTATTGTCTCCTTATGGACCATTTTCTGTGAAGCTTCAAATTCTCCCGTTAAGATGTCATAGAGATGCTCAAATTGGATTGTGTTACGCAAAGAAAAAGGGACAGTTAACAACATTTGTTGTTCCATGGCCAGTTTAGTGGTGGATACTTGATTGATCAACAAAACAGAACTTTATTACTATCTTTTGGGGGCATGGTTTCAATTTTATGGTTTAGTTTTTGAAATGTTATCGCTGAAAAGAAACTAGAATCTTCTACTTCTTCTTCTTCCTCCTTTGAAAAGTTAGACATTTGGAGATGGTGGTTGAAAAAGGAAAATCGGATGCAGCAAACTGATGCTGCACCAAAAGAATTCTATAGTTACACACCTTTTGCAATTAATCTAAATTGGAGCATTTTCTCTTATTCTCCATGGAATGTTTTAGGATTTCTTCTTTACACATGGAGATGGAGTGTAGATTTTTTGTTTATTTTTGACAGACACTCTATTTAACTTTTCATTTCATCAGCAGCTTTCCCAATTCCCTGAACTTCTTGTTTATTTCAGAGATATGCTATTTCTTGGAACTGTTGTTGACTCTTTAGATTATTTAAATTATGCATTATAGATGCCTTGCCCCCTTGTACTTTATACTTCGTAATTTAGCTATTGCCCCCCCTTACAAAGATTGTTACGGTATTAAGGGTGCATTTGTAATTAGCTCAAAGGTTTGATAGCAAGGAGTTCGTTGTAAATAGAGTGAATGGGAGGAGAGGAAAGCAGAGAACTGTTTAATGGCATTAAGTTGACGTAATAATACTCAAGAGTGGAGTTATTGCATTCCCATCTTTCAATCCTATTTTAGCTTTCTGGTTTCTATCACGATCTTCCCAAGTAGCTGTGAAACTTTTTTTTCTTTTCTTTTTTTTTTTTTCTCGTGTTTTTACTATCCCTAAAGACATTTTAAAGGTCTTCCCGGTATGTGACACTCAGAAACGTTTAAAAAAGATGCAGTTAATGCAGCACATACCTGCTAGGATAATGTTGGAGCTTCTGAAAACTTTTTTTGCTAACCTTTCATTAGCAAAATTTGTTTGCATGGTGTATAAAGTTCTTGTGATTTATCAAATTCATCCTGGATTCTGTTATACAAATCTGGTTTAACATATTTTTCCTTTTTAGATGTGCATAAAGGATCTTCAGGGTTTTGTACATGAGGATTTCTCTGTGTTGATGTTATATGGCTCTGCATCATTTTCAGATCTGAACTAA

mRNA sequence

ACTGGGCTTAACTCTGTGACCCACGACGGCAGCGCCAGACCAGTCGCAACGAACCCTGTTCCCACGGTCTCGCGCCAATTCCCTTCTAACCGACGAACCAGATTTGTGGCGCACCCAACCCCCGGTCTCGCAGCAAGAGCGACAACGGCAGATCCCACGGTGTTCCCCACCACGTCTACCACAGGCGGCTACAGAATGTGCATAAAGGATCTTCAGGGTTTTGTACATGAGGATTTCTCTGTGTTGATGTTATATGGCTCTGCATCATTTTCAGATCTGAACTAA

Coding sequence (CDS)

ACTGGGCTTAACTCTGTGACCCACGACGGCAGCGCCAGACCAGTCGCAACGAACCCTGTTCCCACGGTCTCGCGCCAATTCCCTTCTAACCGACGAACCAGATTTGTGGCGCACCCAACCCCCGGTCTCGCAGCAAGAGCGACAACGGCAGATCCCACGGTGTTCCCCACCACGTCTACCACAGGCGGCTACAGAATGTGCATAAAGGATCTTCAGGGTTTTGTACATGAGGATTTCTCTGTGTTGATGTTATATGGCTCTGCATCATTTTCAGATCTGAACTAA

Protein sequence

TGLNSVTHDGSARPVATNPVPTVSRQFPSNRRTRFVAHPTPGLAARATTADPTVFPTTSTTGGYRMCIKDLQGFVHEDFSVLMLYGSASFSDLN

Homology

[Close]

BLAST of Carg10222 vs. NCBI nr
Match: KAG7013354.1 (hypothetical protein SDJN02_23518, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  TGLNSVTHDGSARPVATNPVPTVSRQFPSNRRTRFVAHPTPGLAARATTADPTVFPTTST 60
          TGLNSVTHDGSARPVATNPVPTVSRQFPSNRRTRFVAHPTPGLAARATTADPTVFPTTST
Sbjct: 1  TGLNSVTHDGSARPVATNPVPTVSRQFPSNRRTRFVAHPTPGLAARATTADPTVFPTTST 60

Query: 61 TGGYRMCIKDLQGFVHEDFSVLMLYGSASFSDLN 95
          TGGYRMCIKDLQGFVHEDFSVLMLYGSASFSDLN
Sbjct: 61 TGGYRMCIKDLQGFVHEDFSVLMLYGSASFSDLN 94

The following BLAST results are available for this feature:

BLAST of Carg10222 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013354.1	3.5e-45	100.00	hypothetical protein SDJN02_23518, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg10222 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10222 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10222 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10222-RA	Carg10222-RA	mRNA