Carg10083 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10083
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein ATL16-like
Location	Carg_Chr17: 936823 .. 937713 (+)
RNA-Seq Expression	Carg10083
Synteny	Carg10083

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACCTGTCATCTCTCCGTCGGCCACTCCGCCTCACTCCTCCACCGCCGTTTCAAGTTTTCCGATTATCGCCGTTGCCGTAATCGGAATCTGCGCCACTGCGTTCTTACTCGTCGGCTATTACATCTTCGTCATCAAATGCTGTCTCAACTGGCAACGAATTGAAATCCTCCGCCGGTTTTCCCTTTCTCGCCGCCGTGAAGAGACGTTGATACTCCGGCAGCCGGTGGAGCCACGTGGGTTAGACCCATCGACGATTCAATCAATCCCGTTGATTAATTACAAGAAACCCATTAAGGAAACAACCAGTGGTGGCGAATGCGCCGTTTGCCTGACGGAATTTCAGCCGGAGGAGCAATTGAGAAAGATTCCAATTTGTAGCCATCTCTTTCATATTGATTGCATTGACATTTGGCTTCAGAATAATCCCAATTGCCCACTTTGTAGAACCTCAATCTCCGCCCAAAATTGGCTGATTCCGATCGACCAAGCCCCTTCCCCTCGAGATTTGCCTCTCAATTCCGGCAGCTCCGTCGCTGCCACCACCTCCGATGAGAATTTCGTTGTGATTGAACTTGGTCGGAATCCCGACCGCCGCCGTCCTCCACCGTTTGGAAAGGTTACGAGTATGGGGGATGAATGTATTGACATGAGGGAGAAGGATAAGGAGTTTTTAGTGCAGCCCATTAGGAGGTCGTTTTCGATGGATTCTTCCGGCGACCGGCAGCTGTACATGGCGGTGCAGGCGGCGGTGCGGCAGAGCGGCGGCGGTGAGAGTAGGGTTGAGGCAGAGGGTTGCAGTAACAGAGTACGAAGATCTTTCTTTTCTTTTGGGAGTAGCAGAGGATCTAGAAATGGAGTTTTGCCCATTCAGCTTCAACCTTAA

mRNA sequence

ATGGAAAAACCTGTCATCTCTCCGTCGGCCACTCCGCCTCACTCCTCCACCGCCGTTTCAAGTTTTCCGATTATCGCCGTTGCCGTAATCGGAATCTGCGCCACTGCGTTCTTACTCGTCGGCTATTACATCTTCGTCATCAAATGCTGTCTCAACTGGCAACGAATTGAAATCCTCCGCCGGTTTTCCCTTTCTCGCCGCCGTGAAGAGACGTTGATACTCCGGCAGCCGGTGGAGCCACGTGGGTTAGACCCATCGACGATTCAATCAATCCCGTTGATTAATTACAAGAAACCCATTAAGGAAACAACCAGTGGTGGCGAATGCGCCGTTTGCCTGACGGAATTTCAGCCGGAGGAGCAATTGAGAAAGATTCCAATTTGTAGCCATCTCTTTCATATTGATTGCATTGACATTTGGCTTCAGAATAATCCCAATTGCCCACTTTGTAGAACCTCAATCTCCGCCCAAAATTGGCTGATTCCGATCGACCAAGCCCCTTCCCCTCGAGATTTGCCTCTCAATTCCGGCAGCTCCGTCGCTGCCACCACCTCCGATGAGAATTTCGTTGTGATTGAACTTGGTCGGAATCCCGACCGCCGCCGTCCTCCACCGTTTGGAAAGGTTACGAGTATGGGGGATGAATGTATTGACATGAGGGAGAAGGATAAGGAGTTTTTAGTGCAGCCCATTAGGAGGTCGTTTTCGATGGATTCTTCCGGCGACCGGCAGCTGTACATGGCGGTGCAGGCGGCGGTGCGGCAGAGCGGCGGCGGTGAGAGTAGGGTTGAGGCAGAGGGTTGCAGTAACAGAGTACGAAGATCTTTCTTTTCTTTTGGGAGTAGCAGAGGATCTAGAAATGGAGTTTTGCCCATTCAGCTTCAACCTTAA

Coding sequence (CDS)

ATGGAAAAACCTGTCATCTCTCCGTCGGCCACTCCGCCTCACTCCTCCACCGCCGTTTCAAGTTTTCCGATTATCGCCGTTGCCGTAATCGGAATCTGCGCCACTGCGTTCTTACTCGTCGGCTATTACATCTTCGTCATCAAATGCTGTCTCAACTGGCAACGAATTGAAATCCTCCGCCGGTTTTCCCTTTCTCGCCGCCGTGAAGAGACGTTGATACTCCGGCAGCCGGTGGAGCCACGTGGGTTAGACCCATCGACGATTCAATCAATCCCGTTGATTAATTACAAGAAACCCATTAAGGAAACAACCAGTGGTGGCGAATGCGCCGTTTGCCTGACGGAATTTCAGCCGGAGGAGCAATTGAGAAAGATTCCAATTTGTAGCCATCTCTTTCATATTGATTGCATTGACATTTGGCTTCAGAATAATCCCAATTGCCCACTTTGTAGAACCTCAATCTCCGCCCAAAATTGGCTGATTCCGATCGACCAAGCCCCTTCCCCTCGAGATTTGCCTCTCAATTCCGGCAGCTCCGTCGCTGCCACCACCTCCGATGAGAATTTCGTTGTGATTGAACTTGGTCGGAATCCCGACCGCCGCCGTCCTCCACCGTTTGGAAAGGTTACGAGTATGGGGGATGAATGTATTGACATGAGGGAGAAGGATAAGGAGTTTTTAGTGCAGCCCATTAGGAGGTCGTTTTCGATGGATTCTTCCGGCGACCGGCAGCTGTACATGGCGGTGCAGGCGGCGGTGCGGCAGAGCGGCGGCGGTGAGAGTAGGGTTGAGGCAGAGGGTTGCAGTAACAGAGTACGAAGATCTTTCTTTTCTTTTGGGAGTAGCAGAGGATCTAGAAATGGAGTTTTGCCCATTCAGCTTCAACCTTAA

Protein sequence

MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP

Homology

[Close]

BLAST of Carg10083 vs. NCBI nr
Match: KAG7013490.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 594.0 bits (1530), Expect = 7.3e-166
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE
Sbjct: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
           AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 296

[Close]

BLAST of Carg10083 vs. NCBI nr
Match: XP_022958779.1 (RING-H2 finger protein ATL16-like [Cucurbita moschata])

HSP 1 Score: 588.2 bits (1515), Expect = 4.0e-164
Identity = 292/296 (98.65%), Postives = 295/296 (99.66%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKET+SGGECAVCLTEFQPEE
Sbjct: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETSSGGECAVCLTEFQPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
           AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAV+QSGGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVQQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296

[Close]

BLAST of Carg10083 vs. NCBI nr
Match: KAG6574922.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 587.8 bits (1514), Expect = 5.2e-164
Identity = 293/296 (98.99%), Postives = 294/296 (99.32%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE
Sbjct: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNS SSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSCSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
           AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296

[Close]

BLAST of Carg10083 vs. NCBI nr
Match: XP_023548943.1 (RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 577.4 bits (1487), Expect = 7.1e-161
Identity = 289/297 (97.31%), Postives = 293/297 (98.65%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATP HSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPLHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE
Sbjct: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIP+DQ+PSPRDLPLNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPVDQSPSPRDLPLNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
           AATT+D NFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 AATTADMNFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQS-GGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAVRQS GGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVRQSGGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 297

[Close]

BLAST of Carg10083 vs. NCBI nr
Match: XP_023006323.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 573.2 bits (1476), Expect = 1.3e-159
Identity = 284/296 (95.95%), Postives = 290/296 (97.97%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATP HSST+VSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPLHSSTSVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQP +PRGLDPSTIQSIPLINYKKPIKET SGGECAVCLTEF+PEE
Sbjct: 61  RFSLSRRREETLILRQPADPRGLDPSTIQSIPLINYKKPIKETASGGECAVCLTEFRPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIP+DQAPSPRDL LNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPVDQAPSPRDLALNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
            ATT+DENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 DATTADENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296

[Close]

BLAST of Carg10083 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.2e-67
Identity = 164/364 (45.05%), Postives = 207/364 (56.87%), Query Frame = 0


Query: 8   PSATPP---HSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSL 67
           P   PP    +S+  +SFPI+AVAVIGI ATAFLLV YY+FVIKCCLNW RI+IL RFSL
Sbjct: 17  PPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSL 76

Query: 68  SRRR---EETLILRQP-VEPRGLDPSTIQSIPLINYKKPI-------------KETTSGG 127
           SRRR   ++ L++  P +  RGLD S I++IP+  +KK               +E     
Sbjct: 77  SRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQ 136

Query: 128 ECAVCLTEFQPEEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAP 187
           EC+VCL+EFQ EE+LR IP CSHLFHIDCID+WLQNN NCPLCRT +S      P D+  
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDT-SFPPDRVS 196

Query: 188 SPRDLPLNSGSSVAATTSDENFVVIELGRNPDRRRPPP---------------------- 247
           +P   P N    +     +  +VVIELG +    R  P                      
Sbjct: 197 APSTSPEN----LVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENT 256

Query: 248 ----------------------FGKVTSMGDECIDMRE-KDKEF-LVQPIRRSFSMDSSG 297
                                   K+TSMGDECID+R  KD++F  +QPIRRS SMDSS 
Sbjct: 257 QNSISPSPKKLDRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSA 316

[Close]

BLAST of Carg10083 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.8e-62
Identity = 154/350 (44.00%), Postives = 202/350 (57.71%), Query Frame = 0


Query: 13  PHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETL 72
           P +S++ ++FPI+A+AVIGI ATAFLLV YYIFVIKCCLNW +I+I RR   S  +   +
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLM 91

Query: 73  ILRQPVEPRGLDPSTIQSIPLINYKK------PIKETTSGGECAVCLTEFQPEEQLRKIP 132
           I       RGLD S I++IP+  +KK         ++ +  EC+VCL EFQ +E+LR IP
Sbjct: 92  IYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIP 151

Query: 133 ICSHLFHIDCIDIWLQNNPNCPLCRTSISAQ-NWLIPIDQAP-SPRDLPLNSGS----SV 192
            C H+FHIDCIDIWLQ N NCPLCRTS+S + ++ + +  AP SPR+   +S +      
Sbjct: 152 NCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNLEPG 211

Query: 193 AATTSDENFVVIEL------------------------------GRNPDRRRPPP----- 252
                D++FVVIEL                              G +P    P P     
Sbjct: 212 LVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVSPLPIKFGN 271

Query: 253 ---------FGKVTSMGDECIDMREKDKEF-LVQPIRRSFSMDSSGDRQLYMAVQAAVRQ 297
                    F KVTSMGDECID R KD  F  +QPIRRS SMDSS DRQLY+AVQ  + +
Sbjct: 272 RGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSISMDSSVDRQLYLAVQEEISR 331

[Close]

BLAST of Carg10083 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.7e-21
Identity = 83/279 (29.75%), Postives = 129/279 (46.24%), Query Frame = 0


Query: 15  SSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETLIL 74
           SS++ SSF  + +A+IGI  +A +LV YY  + K C    +       +L+   E     
Sbjct: 47  SSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSS 106

Query: 75  RQPVEPR--GLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQLRKIPICSHLF 134
            Q +     GL+ S I+SI +  YK        G +C+VCL+EF+  E LR +P C+H F
Sbjct: 107 TQRISTNGDGLNESMIKSITVYKYKSG-DGFVDGSDCSVCLSEFEENESLRLLPKCNHAF 166

Query: 135 HIDCIDIWLQNNPNCPLCR----------------TSISAQNWLIPIDQAPSPRDLPLNS 194
           H+ CID WL+++ NCPLCR                 S+   N      Q  S  ++ LN 
Sbjct: 167 HLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNL 226

Query: 195 GSSVAATTSDENFVVI---ELG-RNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIR 254
               + T   ++ VVI   E+G RN D R          + +E  + +++D      PIR
Sbjct: 227 AGYESQTGDFDSVVVIEDLEIGSRNSDAR------SELQLPEERRETKDEDS----LPIR 286

Query: 255 RSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNR 272
           RS S++S     + +++   +R+    E      G S R
Sbjct: 287 RSVSLNSG----VVVSIADVLREIEDEEGESGGVGTSQR 310

[Close]

BLAST of Carg10083 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-18
Identity = 78/256 (30.47%), Postives = 118/256 (46.09%), Query Frame = 0


Query: 25  IAVAVIGICATAFLLVGYYIFVIKCCLN---------WQRIEILRRFSLSRRREETLILR 84
           + +A+ GI ATAFLL  YY  V K C N           R +I+   +   R ++     
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFA 120

Query: 85  QPVEPRGLDPSTIQSIPLINYKKPIKE-TTSGGECAVCLTEFQPEEQLRKIPICSHLFHI 144
                 GLD + I+ I     KK       +G +C++CL EF  +E LR +P C+H FH+
Sbjct: 121 LESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHV 180

Query: 145 DCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVI-- 204
            CID WL+++ NCPLCR  I     ++P  Q P    + +N     +   S E  VV+  
Sbjct: 181 VCIDRWLKSHSNCPLCRAKI-----IVPTTQQPEHHVVVMNLDRFTSNVGSAEGNVVVDD 240

Query: 205 ---ELGRNPDRRRPPPFG------KVTSMGDE---CIDMREKDKEFLVQPIRRSFSMDSS 257
              E+  +     P  F       +++  G+E     D+   ++E LV  ++RSFS  S 
Sbjct: 241 HREEVSVSISSHHPSWFSAADIVLRISRDGEEEEGNYDLENGNREKLVD-LKRSFS--SG 300

[Close]

BLAST of Carg10083 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 2.4e-18
Identity = 85/292 (29.11%), Postives = 127/292 (43.49%), Query Frame = 0


Query: 20  SSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQR------IEILRRFSLSRRREETLI 79
           S F  + +A+IGI A+AF+LV YY  + K C   +          + R S     + T  
Sbjct: 54  SDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNN 113

Query: 80  LRQ--PVEPR---------GLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQL 139
                   P          GLD S I+SI +  Y+K +       +C+VCL+EFQ  E L
Sbjct: 114 NNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRK-MDGFVESSDCSVCLSEFQENESL 173

Query: 140 RKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAA 199
           R +P C+H FH+ CID WL+++ NCPLCR  I   + +  +D          NS      
Sbjct: 174 RLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNS-----I 233

Query: 200 TTSDENFVVIELGRNPDRRRPPPFGK-VTSMGDECIDMREKDKEFLVQPIRRSFSMDSSG 259
           +T D++ VV+ L     R R     +  T    E  D R+ ++       RRS S++S G
Sbjct: 234 STGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEE-------RRSASLNSGG 293

Query: 260 D----RQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGV 290
                  +   ++     +G G SR   EG   +        GS+    NG+
Sbjct: 294 GVVSIADILREIEDDEESAGVGTSRWVEEGEGEKTPP---PSGSAANQTNGI 329

[Close]

BLAST of Carg10083 vs. ExPASy TrEMBL
Match: A0A6J1H640 (RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111459948 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 1.9e-164
Identity = 292/296 (98.65%), Postives = 295/296 (99.66%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKET+SGGECAVCLTEFQPEE
Sbjct: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETSSGGECAVCLTEFQPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
           AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAV+QSGGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVQQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296

[Close]

BLAST of Carg10083 vs. ExPASy TrEMBL
Match: A0A6J1L4L0 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499094 PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 6.4e-160
Identity = 284/296 (95.95%), Postives = 290/296 (97.97%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           MEKP+ISPSATP HSST+VSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR
Sbjct: 1   MEKPLISPSATPLHSSTSVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRREETLILRQP +PRGLDPSTIQSIPLINYKKPIKET SGGECAVCLTEF+PEE
Sbjct: 61  RFSLSRRREETLILRQPADPRGLDPSTIQSIPLINYKKPIKETASGGECAVCLTEFRPEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIP+DQAPSPRDL LNSGSSV
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPVDQAPSPRDLALNSGSSV 180

Query: 181 AATTSDENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240
            ATT+DENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS
Sbjct: 181 DATTADENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSS 240

Query: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGVLPIQLQP 297
           GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGS RGSRNGVLPIQLQP
Sbjct: 241 GDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296

[Close]

BLAST of Carg10083 vs. ExPASy TrEMBL
Match: A0A5A7VEZ8 (RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00490 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.7e-133
Identity = 248/308 (80.52%), Postives = 264/308 (85.71%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           M +P+ISPS +P HSS  VSSFPIIAVAVIGICATAFLLV YYIFVIKCCLNWQRIEILR
Sbjct: 1   MAQPLISPSTSPLHSSNPVSSFPIIAVAVIGICATAFLLVSYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRRE+TLILRQ  EPRGLDPS IQSIPLINYKKPI ETT+GGECAVCLTEFQ EE
Sbjct: 61  RFSLSRRREDTLILRQQAEPRGLDPSIIQSIPLINYKKPIGETTTGGECAVCLTEFQTEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNN NCPLCRTSIS QNWLIP DQAPS RDL LN+G  +
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNSNCPLCRTSISNQNWLIPTDQAPSRRDLALNTGIPI 180

Query: 181 AATTSDENFVVIELGRNPDRRRPP------------PFGKVTSMGDECIDMREKDKEFLV 240
           +A   DENFVVIELG N DRR+PP             F KVTSMGDECI+MREKD+EF+V
Sbjct: 181 SA--GDENFVVIELGGNLDRRQPPGLVSGEVAKSERKFKKVTSMGDECINMREKDEEFIV 240

Query: 241 QPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNG 297
           QPIRRSFSMDSSGDRQLYMAVQAAVR+  GGE+ VE EGCS+RV+RSFFSFGS RGSRN 
Sbjct: 241 QPIRRSFSMDSSGDRQLYMAVQAAVREKSGGENGVEVEGCSSRVKRSFFSFGSGRGSRNA 300

[Close]

BLAST of Carg10083 vs. ExPASy TrEMBL
Match: A0A1S3CD01 (RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103499411 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.7e-133
Identity = 248/308 (80.52%), Postives = 264/308 (85.71%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           M +P+ISPS +P HSS  VSSFPIIAVAVIGICATAFLLV YYIFVIKCCLNWQRIEILR
Sbjct: 1   MAQPLISPSTSPLHSSNPVSSFPIIAVAVIGICATAFLLVSYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEE 120
           RFSLSRRRE+TLILRQ  EPRGLDPS IQSIPLINYKKPI ETT+GGECAVCLTEFQ EE
Sbjct: 61  RFSLSRRREDTLILRQQAEPRGLDPSIIQSIPLINYKKPIGETTTGGECAVCLTEFQTEE 120

Query: 121 QLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSV 180
           QLRKIPICSHLFHIDCIDIWLQNN NCPLCRTSIS QNWLIP DQAPS RDL LN+G  +
Sbjct: 121 QLRKIPICSHLFHIDCIDIWLQNNSNCPLCRTSISNQNWLIPTDQAPSRRDLALNTGIPI 180

Query: 181 AATTSDENFVVIELGRNPDRRRPP------------PFGKVTSMGDECIDMREKDKEFLV 240
           +A   DENFVVIELG N DRR+PP             F KVTSMGDECI+MREKD+EF+V
Sbjct: 181 SA--GDENFVVIELGGNLDRRQPPGLVSGEVAKSERKFKKVTSMGDECINMREKDEEFIV 240

Query: 241 QPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNG 297
           QPIRRSFSMDSSGDRQLYMAVQAAVR+  GGE+ VE EGCS+RV+RSFFSFGS RGSRN 
Sbjct: 241 QPIRRSFSMDSSGDRQLYMAVQAAVREKSGGENGVEVEGCSSRVKRSFFSFGSGRGSRNA 300

[Close]

BLAST of Carg10083 vs. ExPASy TrEMBL
Match: A0A0A0LNP5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G178720 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.7e-132
Identity = 249/309 (80.58%), Postives = 263/309 (85.11%), Query Frame = 0


Query: 1   MEKPVISPSATPPHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILR 60
           M +P+ISPS TP HSS  VSSFPIIAVAVIGICATAFLLV YYIFVIKCCLNWQRIEILR
Sbjct: 1   MAQPLISPSTTPLHSSNPVSSFPIIAVAVIGICATAFLLVSYYIFVIKCCLNWQRIEILR 60

Query: 61  RFSLSRRREETLILRQPVEPRGLDPSTIQSIPLINYKKPIKE-TTSGGECAVCLTEFQPE 120
           RFSLSRRRE+TLILRQ  EPRGLDPSTIQSIPLINYKKPI E TT+GGECAVCLTEFQ E
Sbjct: 61  RFSLSRRREQTLILRQQAEPRGLDPSTIQSIPLINYKKPINETTTTGGECAVCLTEFQTE 120

Query: 121 EQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSS 180
           EQLRKIPICSHLFHIDCIDIWLQNN NCPLCRTSIS QNWLIP +QAPS RDL LN  +S
Sbjct: 121 EQLRKIPICSHLFHIDCIDIWLQNNSNCPLCRTSISNQNWLIPTNQAPSARDLALN--TS 180

Query: 181 VAATTSDENFVVIELGRNPDRRRPP------------PFGKVTSMGDECIDMREKDKEFL 240
           +  +  DENFVVIELG N DR RPP             F KVTSMGDECI+MREKD+EF+
Sbjct: 181 IPISAGDENFVVIELGGNLDRCRPPELVSGEVAKSERKFKKVTSMGDECINMREKDEEFI 240

Query: 241 VQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRN 297
           VQPIRRSFSMDSSGDRQLYMAVQAAVR+  GGES VE EGCS+RV+RSFFSFGS RGSRN
Sbjct: 241 VQPIRRSFSMDSSGDRQLYMAVQAAVREKSGGESGVEVEGCSSRVKRSFFSFGSGRGSRN 300

[Close]

BLAST of Carg10083 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-68
Identity = 164/364 (45.05%), Postives = 207/364 (56.87%), Query Frame = 0


Query: 8   PSATPP---HSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSL 67
           P   PP    +S+  +SFPI+AVAVIGI ATAFLLV YY+FVIKCCLNW RI+IL RFSL
Sbjct: 17  PPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSL 76

Query: 68  SRRR---EETLILRQP-VEPRGLDPSTIQSIPLINYKKPI-------------KETTSGG 127
           SRRR   ++ L++  P +  RGLD S I++IP+  +KK               +E     
Sbjct: 77  SRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQ 136

Query: 128 ECAVCLTEFQPEEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAP 187
           EC+VCL+EFQ EE+LR IP CSHLFHIDCID+WLQNN NCPLCRT +S      P D+  
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDT-SFPPDRVS 196

Query: 188 SPRDLPLNSGSSVAATTSDENFVVIELGRNPDRRRPPP---------------------- 247
           +P   P N    +     +  +VVIELG +    R  P                      
Sbjct: 197 APSTSPEN----LVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENT 256

Query: 248 ----------------------FGKVTSMGDECIDMRE-KDKEF-LVQPIRRSFSMDSSG 297
                                   K+TSMGDECID+R  KD++F  +QPIRRS SMDSS 
Sbjct: 257 QNSISPSPKKLDRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSA 316

[Close]

BLAST of Carg10083 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 238.8 bits (608), Expect = 5.5e-63
Identity = 154/350 (44.00%), Postives = 202/350 (57.71%), Query Frame = 0


Query: 13  PHSSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETL 72
           P +S++ ++FPI+A+AVIGI ATAFLLV YYIFVIKCCLNW +I+I RR   S  +   +
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLM 91

Query: 73  ILRQPVEPRGLDPSTIQSIPLINYKK------PIKETTSGGECAVCLTEFQPEEQLRKIP 132
           I       RGLD S I++IP+  +KK         ++ +  EC+VCL EFQ +E+LR IP
Sbjct: 92  IYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIP 151

Query: 133 ICSHLFHIDCIDIWLQNNPNCPLCRTSISAQ-NWLIPIDQAP-SPRDLPLNSGS----SV 192
            C H+FHIDCIDIWLQ N NCPLCRTS+S + ++ + +  AP SPR+   +S +      
Sbjct: 152 NCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNLEPG 211

Query: 193 AATTSDENFVVIEL------------------------------GRNPDRRRPPP----- 252
                D++FVVIEL                              G +P    P P     
Sbjct: 212 LVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVSPLPIKFGN 271

Query: 253 ---------FGKVTSMGDECIDMREKDKEF-LVQPIRRSFSMDSSGDRQLYMAVQAAVRQ 297
                    F KVTSMGDECID R KD  F  +QPIRRS SMDSS DRQLY+AVQ  + +
Sbjct: 272 RGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSISMDSSVDRQLYLAVQEEISR 331

[Close]

BLAST of Carg10083 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 6.2e-22
Identity = 83/279 (29.75%), Postives = 129/279 (46.24%), Query Frame = 0


Query: 15  SSTAVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETLIL 74
           SS++ SSF  + +A+IGI  +A +LV YY  + K C    +       +L+   E     
Sbjct: 47  SSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSS 106

Query: 75  RQPVEPR--GLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQLRKIPICSHLF 134
            Q +     GL+ S I+SI +  YK        G +C+VCL+EF+  E LR +P C+H F
Sbjct: 107 TQRISTNGDGLNESMIKSITVYKYKSG-DGFVDGSDCSVCLSEFEENESLRLLPKCNHAF 166

Query: 135 HIDCIDIWLQNNPNCPLCR----------------TSISAQNWLIPIDQAPSPRDLPLNS 194
           H+ CID WL+++ NCPLCR                 S+   N      Q  S  ++ LN 
Sbjct: 167 HLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNL 226

Query: 195 GSSVAATTSDENFVVI---ELG-RNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIR 254
               + T   ++ VVI   E+G RN D R          + +E  + +++D      PIR
Sbjct: 227 AGYESQTGDFDSVVVIEDLEIGSRNSDAR------SELQLPEERRETKDEDS----LPIR 286

Query: 255 RSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNR 272
           RS S++S     + +++   +R+    E      G S R
Sbjct: 287 RSVSLNSG----VVVSIADVLREIEDEEGESGGVGTSQR 310

[Close]

BLAST of Carg10083 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-20
Identity = 78/256 (30.47%), Postives = 118/256 (46.09%), Query Frame = 0


Query: 25  IAVAVIGICATAFLLVGYYIFVIKCCLN---------WQRIEILRRFSLSRRREETLILR 84
           + +A+ GI ATAFLL  YY  V K C N           R +I+   +   R ++     
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFA 120

Query: 85  QPVEPRGLDPSTIQSIPLINYKKPIKE-TTSGGECAVCLTEFQPEEQLRKIPICSHLFHI 144
                 GLD + I+ I     KK       +G +C++CL EF  +E LR +P C+H FH+
Sbjct: 121 LESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHV 180

Query: 145 DCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAATTSDENFVVI-- 204
            CID WL+++ NCPLCR  I     ++P  Q P    + +N     +   S E  VV+  
Sbjct: 181 VCIDRWLKSHSNCPLCRAKI-----IVPTTQQPEHHVVVMNLDRFTSNVGSAEGNVVVDD 240

Query: 205 ---ELGRNPDRRRPPPFG------KVTSMGDE---CIDMREKDKEFLVQPIRRSFSMDSS 257
              E+  +     P  F       +++  G+E     D+   ++E LV  ++RSFS  S 
Sbjct: 241 HREEVSVSISSHHPSWFSAADIVLRISRDGEEEEGNYDLENGNREKLVD-LKRSFS--SG 300

[Close]

BLAST of Carg10083 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-19
Identity = 85/292 (29.11%), Postives = 127/292 (43.49%), Query Frame = 0


Query: 20  SSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQR------IEILRRFSLSRRREETLI 79
           S F  + +A+IGI A+AF+LV YY  + K C   +          + R S     + T  
Sbjct: 54  SDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNN 113

Query: 80  LRQ--PVEPR---------GLDPSTIQSIPLINYKKPIKETTSGGECAVCLTEFQPEEQL 139
                   P          GLD S I+SI +  Y+K +       +C+VCL+EFQ  E L
Sbjct: 114 NNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRK-MDGFVESSDCSVCLSEFQENESL 173

Query: 140 RKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPIDQAPSPRDLPLNSGSSVAA 199
           R +P C+H FH+ CID WL+++ NCPLCR  I   + +  +D          NS      
Sbjct: 174 RLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNS-----I 233

Query: 200 TTSDENFVVIELGRNPDRRRPPPFGK-VTSMGDECIDMREKDKEFLVQPIRRSFSMDSSG 259
           +T D++ VV+ L     R R     +  T    E  D R+ ++       RRS S++S G
Sbjct: 234 STGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEE-------RRSASLNSGG 293

Query: 260 D----RQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSSRGSRNGV 290
                  +   ++     +G G SR   EG   +        GS+    NG+
Sbjct: 294 GVVSIADILREIEDDEESAGVGTSRWVEEGEGEKTPP---PSGSAANQTNGI 329

The following BLAST results are available for this feature:

BLAST of Carg10083 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013490.1	7.3e-166	100.00	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022958779.1	4.0e-164	98.65	RING-H2 finger protein ATL16-like [Cucurbita moschata]	[more]
KAG6574922.1	5.2e-164	98.99	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023548943.1	7.1e-161	97.31	RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006323.1	1.3e-159	95.95	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]

BLAST of Carg10083 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSW9	6.2e-67	45.05	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	7.8e-62	44.00	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LF64	8.7e-21	29.75	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
P0C041	1.1e-18	30.47	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q9SRQ8	2.4e-18	29.11	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of Carg10083 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H640	1.9e-164	98.65	RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111459948 ...	[more]
A0A6J1L4L0	6.4e-160	95.95	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499094 PE...	[more]
A0A5A7VEZ8	6.7e-133	80.52	RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CD01	6.7e-133	80.52	RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103499411 PE=4 SV=1	[more]
A0A0A0LNP5	9.7e-132	80.58	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G178720 P...	[more]

BLAST of Carg10083 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	4.4e-68	45.05	RING/U-box superfamily protein	[more]
AT1G04360.1	5.5e-63	44.00	RING/U-box superfamily protein	[more]
AT5G17600.1	6.2e-22	29.75	RING/U-box superfamily protein	[more]
AT4G17905.1	7.6e-20	30.47	RING/U-box superfamily protein	[more]
AT3G03550.1	1.7e-19	29.11	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 109..150 e-value: 2.4E-5 score: 33.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 108..151 e-value: 5.7E-12 score: 45.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 109..151 score: 12.149959
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 71..157 e-value: 4.2E-22 score: 79.6
None	No IPR available	PANTHER	PTHR46913:SF1	RING-H2 FINGER PROTEIN ATL16	coord: 9..295
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 108..151 e-value: 1.57713E-16 score: 70.0233
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 108..158
IPR044600	RING-H2 finger protein ATL1/ATL16	PANTHER	PTHR46913	RING-H2 FINGER PROTEIN ATL16	coord: 9..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10083-RA	Carg10083-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity