Carg10058 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10058
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 1072606 .. 1074529 (+)
RNA-Seq ExpressionCarg10058
SyntenyCarg10058
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTCAGTGTTCTTCAACAATCTTCTTTCTGTAAAATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGTATTTATGTTACTATACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAAGTAAGTGTCTATTTCCCTTTCTTCCTTCCCTAAAATTATGTTTGTGGATCTGCACATAGTTATATATGGACTGGTTATTGACAAATATTTTTCCCTTGTTTCGGGGTGGAGGTGTCCTGTAATTGCTGATTGCTGTTAAGATTATCTGTGCGTCGTTTAATTTCATTTCTTTTAGAATTTATCGAGCTGTTAGGGATTTGCTATGGGAAATTCACTGGTTTTTCAAGGTATCGGAACTCGTTGAGGGTTAATTCACAATCTTTTGTGAATGACAATAAAATATAACAGACAGTAATTTATGGGGAAAAAAAGTTTTCAATGATGCTCATAATGAGAGTGGGGAGTTTGGATAAATGAAGAACGTGTTTATATTTGGTTAAATTGCAAGTTTAGTCTCTCAATTACTAGCACAAAATTGAACCTTTTAACAATTCATTAAACATAAAATTTAAATCTATTTCTGTAGATCAATTAATTTTTAGAGCCTCACACACTATTGAAAGCTAAGGCTCCTTTTAGACATTAGATTGAAACTTTGGAGTCCTGTTAGACACTTTTGTTAGTAGACCAAATAAGCACAAATTTCGAAGTTTATGGGCCTAACTCGCAATTGAACCTTTATAGTTTCTTAATTGATTTAGCTCTAGCTTTGTTCATTTTATGCTTGTATCCTCCATGGGTTGATGAATCTATGAGCTTTCCAGGCAGTATTGAACCATAGAAGTTACTTAAAAATACATTTTGTTAGCGAAGTCAAGCCTTTCATATGAATTGGGCAGTTCATTTGTCAGCATTTTCAGCTTCATTAGAAGTAAAAACTATCGATACAATATTATTGTTCTTATCTTCATAAGCATTAGTTCTTATGTTCTACTATATAATATCAAGGGTTTAATTGAATTACTTCCTCTTCTGATAGTCTTATATAGTGTATCCTCCTGAGGGACCGAGGCCACCGTCACCAGAAGAAGTAAGAGAGATGGCACGGGAATTGGCTCGAAAGAACAACATTCGCTGATGATATGTGGTCAGTGAGTAATGCAGCATTTAAGTCATATTTTCAGATTGTCGAGTTGATTGTTTCACATGTATTTATCTGTTCATAGAGTAATTGATGACTATCAATATTTAGGAGCAACTATGAATCAGCCTTTGGTTAGTTCAGGTGGGATAAAGATGATAAGGGCCAAACTCAACTTGCTGAGATAAACAGCCTATCTGTACTATGGTCCTGCTACTGCTCTAACTGTGGTAATATGTCTGTGTAATAATGGGGGGAAAAAGTCTTATTTAGATCAATGTGATGGGATTGATACACAGTGATGCTGTTTTTCTTAATAAAGTAGAACTTTGGGGAATAATCTGAGAGATTGACCTAAGACCAATATGTTTCTATTTCCTTCTCTAAAACTCCCTCCCATGTCTTCTCCCTCCAACTCCCTTCCCTGTATTTCACCTCTGACGACGACAATGCTCTCTTCCATGTCTTCTTCCTCTGGTGACAGCAACGGTGACAATGAGTAGAGTTGTTTCTTCTGTCTCTAGAGGTCGAACGTGCGAGAAAAGCAATCAATAATCCTGAAAAAGGGTTGGTGACACAGGTTAGTAAGCTTTGTTTTGAAGAACTCGGTCAAATTTCAGTTTTAAGTCTGGAATGTGAAGGGAGACATGTTATATGTGGAGATCAATGATTTTGAAGCATACTAGCTATGAGATCACACATCAGTTAGAGAGTGAAACGAAATATTCCTTATAAGGG

mRNA sequence

TTCTTCAGTGTTCTTCAACAATCTTCTTTCTGTAAAATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGTATTTATGTTACTATACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAATCTTATATAGTGTATCCTCCTGAGGGACCGAGGCCACCGTCACCAGAAGAAGTAAGAGAGATGGCACGGGAATTGGCTCGAAAGAACAACATTCGCTGATGATATGTGGTCAGTGAGTAATGCAGCATTTAAGTCATATTTTCAGATTGTCGAGTTGATTGTTTCACATGTATTTATCTGTTCATAGAGTAATTGATGACTATCAATATTTAGGAGCAACTATGAATCAGCCTTTGGTTAGTTCAGGTGGGATAAAGATGATAAGGGCCAAACTCAACTTGCTGAGATAAACAGCCTATCTGTACTATGGTCCTGCTACTGCTCTAACTGTGGTAATATGTCTGTGTAATAATGGGGGGAAAAAGTCTTATTTAGATCAATGTGATGGGATTGATACACAGTGATGCTGTTTTTCTTAATAAAGTAGAACTTTGGGGAATAATCTGAGAGATTGACCTAAGACCAATATGTTTCTATTTCCTTCTCTAAAACTCCCTCCCATGTCTTCTCCCTCCAACTCCCTTCCCTGTATTTCACCTCTGACGACGACAATGCTCTCTTCCATGTCTTCTTCCTCTGGTGACAGCAACGGTGACAATGAGTAGAGTTGTTTCTTCTGTCTCTAGAGGTCGAACGTGCGAGAAAAGCAATCAATAATCCTGAAAAAGGGTTGGTGACACAGGTTAGTAAGCTTTGTTTTGAAGAACTCGGTCAAATTTCAGTTTTAAGTCTGGAATGTGAAGGGAGACATGTTATATGTGGAGATCAATGATTTTGAAGCATACTAGCTATGAGATCACACATCAGTTAGAGAGTGAAACGAAATATTCCTTATAAGGG

Coding sequence (CDS)

ATGTCTTCAATTGGAACATCCAAGGGAATTCTGGAGATCGCCAAGTTCGGTATTTATGTTACTATACCGATCTTTTTAATGTACACCTTCGCCAACAATAGCAAAAATCTCCAGAAATTCATTGGCAAATCTTATATAGTGTATCCTCCTGAGGGACCGAGGCCACCGTCACCAGAAGAAGTAAGAGAGATGGCACGGGAATTGGCTCGAAAGAACAACATTCGCTGA

Protein sequence

MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEEVREMARELARKNNIR
Homology
BLAST of Carg10058 vs. NCBI nr
Match: XP_023006766.1 (uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006767.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006768.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006769.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023547605.1 uncharacterized protein LOC111806495 [Cucurbita pepo subsp. pepo] >XP_023547606.1 uncharacterized protein LOC111806495 [Cucurbita pepo subsp. pepo] >KAG7013515.1 hypothetical protein SDJN02_23681 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

BLAST of Carg10058 vs. NCBI nr
Match: XP_022958891.1 (uncharacterized protein LOC111460043 [Cucurbita moschata] >XP_022958892.1 uncharacterized protein LOC111460043 [Cucurbita moschata] >XP_022958893.1 uncharacterized protein LOC111460043 [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 9.2e-33
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVT+PIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNN+R
Sbjct: 61 VREMARELARKNNMR 75

BLAST of Carg10058 vs. NCBI nr
Match: XP_022138377.1 (uncharacterized protein LOC111009565 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFG+YV+IPIFLMYTFANNSKNLQ+FIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGLYVSIPIFLMYTFANNSKNLQRFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

BLAST of Carg10058 vs. NCBI nr
Match: XP_004150908.1 (uncharacterized protein LOC101207372 [Cucumis sativus] >XP_031737030.1 uncharacterized protein LOC101207372 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-31
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVTIPI LMYTFANNSKNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

BLAST of Carg10058 vs. NCBI nr
Match: XP_038906534.1 (uncharacterized protein LOC120092510 [Benincasa hispida] >XP_038906535.1 uncharacterized protein LOC120092510 [Benincasa hispida] >XP_038906536.1 uncharacterized protein LOC120092510 [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSS+GTSKGILEIAKFGIYVTIPI LMYTFANNSKNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSVGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

BLAST of Carg10058 vs. ExPASy TrEMBL
Match: A0A6J1L334 (uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

BLAST of Carg10058 vs. ExPASy TrEMBL
Match: A0A6J1H3E4 (uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC111460043 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.5e-33
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVT+PIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNN+R
Sbjct: 61 VREMARELARKNNMR 75

BLAST of Carg10058 vs. ExPASy TrEMBL
Match: A0A6J1CAY1 (uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009565 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFG+YV+IPIFLMYTFANNSKNLQ+FIGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGLYVSIPIFLMYTFANNSKNLQRFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

BLAST of Carg10058 vs. ExPASy TrEMBL
Match: A0A0A0LIL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.9e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVTIPI LMYTFANNSKNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

BLAST of Carg10058 vs. ExPASy TrEMBL
Match: A0A1S3BLQ1 (uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKGILEIAKFGIYVTIPI LMYTFANNSKNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNI 75
          VREMARELARKNNI
Sbjct: 61 VREMARELARKNNI 74

BLAST of Carg10058 vs. TAIR 10
Match: AT4G14615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-28
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIG-KSYIVYPPEGPRPPSPE 60
          MSS+GTSKG+LEI KFG+YV +PI LMYTFANNS N++KF+G +SY+VYP E PRPPSP+
Sbjct: 1  MSSVGTSKGVLEIVKFGVYVAVPIVLMYTFANNSTNIKKFMGNRSYVVYPEEAPRPPSPD 60

Query: 61 EVREMARELARKNNIR 76
          E+REMARELARK NIR
Sbjct: 61 ELREMARELARKKNIR 76

BLAST of Carg10058 vs. TAIR 10
Match: AT1G52825.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14615.1); Has 52 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 2.6e-25
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 0

Query: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGK-SYIVYPPEGPRPPSPE 60
          MSS+GTSKGILEIAKFG+YV +PI L+YTFANNS N++KF+G  SY+VYP E PRPPSPE
Sbjct: 1  MSSVGTSKGILEIAKFGVYVAVPIVLIYTFANNSTNIKKFMGNHSYVVYPKEAPRPPSPE 60

Query: 61 EVREMARELARK 72
          E+REMA++LA K
Sbjct: 61 ELREMAKQLALK 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023006766.13.2e-33100.00uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006767.1 uncharac... [more]
XP_022958891.19.2e-3397.33uncharacterized protein LOC111460043 [Cucurbita moschata] >XP_022958892.1 unchar... [more]
XP_022138377.13.5e-3296.00uncharacterized protein LOC111009565 [Momordica charantia][more]
XP_004150908.11.0e-3196.00uncharacterized protein LOC101207372 [Cucumis sativus] >XP_031737030.1 uncharact... [more]
XP_038906534.11.3e-3194.67uncharacterized protein LOC120092510 [Benincasa hispida] >XP_038906535.1 unchara... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1L3341.5e-33100.00uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403... [more]
A0A6J1H3E44.5e-3397.33uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
A0A6J1CAY11.7e-3296.00uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0LIL94.9e-3296.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1[more]
A0A1S3BLQ11.4e-3195.95uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=... [more]
Match NameE-valueIdentityDescription
AT4G14615.12.5e-2875.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G52825.12.6e-2573.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018625Protein Pet100PFAMPF09803Pet100coord: 11..72
e-value: 2.8E-9
score: 37.3
NoneNo IPR availablePANTHERPTHR35700:SF2PROTEIN, PUTATIVE-RELATEDcoord: 1..73
NoneNo IPR availablePANTHERPTHR35700OS07G0181800 PROTEINcoord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10058-RACarg10058-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033617 mitochondrial cytochrome c oxidase assembly
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion