Carg10047 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10047
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Epidermal patterning factor-like protein
Location	Carg_Chr17: 1128726 .. 1129097 (+)
RNA-Seq Expression	Carg10047
Synteny	Carg10047

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTAGTCCTCCACCACCACCACCGCCGCCGTCCTCCTCGCCCAACCCTTCTTCTTCTCGCCGCGCTCCTCCTCCTCGCCTCCGCCATTGCCGCCCGCCCCACCCCAATCGGTAAGTCCCTAAACTCAATTCCTCTAATTAACCCATTTCTGGGTTTTACAAAAACAGAGGAAACAGAGTTTCCAGCTATGACACGGCGGAGACTCCGCGGGCTTGGGTCGTCCCCACCGATTTGTAGATCCAAGTGCGGCAGTTGCTCGCCGTGCACGGCGGTGCACATCCCAATTCAGCCGGGACTGAGTTTGCCGTCGGAGTATTACCCAGAAGCGTGGCGGTGCAAATGCGGCAACTCCCTTTATTTGCCATGA

mRNA sequence

ATGGCCGTAGTCCTCCACCACCACCACCGCCGCCGTCCTCCTCGCCCAACCCTTCTTCTTCTCGCCGCGCTCCTCCTCCTCGCCTCCGCCATTGCCGCCCGCCCCACCCCAATCGGTAAGTCCCTAAACTCAATTCCTCTAATTAACCCATTTCTGGGTTTTACAAAAACAGAGGAAACAGAGTTTCCAGCTATGACACGGCGGAGACTCCGCGGGCTTGGGTCGTCCCCACCGATTTGTAGATCCAAGTGCGGCAGTTGCTCGCCGTGCACGGCGGTGCACATCCCAATTCAGCCGGGACTGAGTTTGCCGTCGGAGTATTACCCAGAAGCGTGGCGGTGCAAATGCGGCAACTCCCTTTATTTGCCATGA

Coding sequence (CDS)

ATGGCCGTAGTCCTCCACCACCACCACCGCCGCCGTCCTCCTCGCCCAACCCTTCTTCTTCTCGCCGCGCTCCTCCTCCTCGCCTCCGCCATTGCCGCCCGCCCCACCCCAATCGGTAAGTCCCTAAACTCAATTCCTCTAATTAACCCATTTCTGGGTTTTACAAAAACAGAGGAAACAGAGTTTCCAGCTATGACACGGCGGAGACTCCGCGGGCTTGGGTCGTCCCCACCGATTTGTAGATCCAAGTGCGGCAGTTGCTCGCCGTGCACGGCGGTGCACATCCCAATTCAGCCGGGACTGAGTTTGCCGTCGGAGTATTACCCAGAAGCGTGGCGGTGCAAATGCGGCAACTCCCTTTATTTGCCATGA

Protein sequence

MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEETEFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP

Homology

[Close]

BLAST of Carg10047 vs. NCBI nr
Match: KAG7013526.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 3.9e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET 60
           MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET
Sbjct: 1   MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET 60

Query: 61  EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL 120
           EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL
Sbjct: 61  EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL 120

Query: 121 YLP 124
           YLP
Sbjct: 121 YLP 123

[Close]

BLAST of Carg10047 vs. NCBI nr
Match: KAG6574959.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.0 bits (650), Expect = 3.3e-64
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET 60
           MAVVLHHH RRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET
Sbjct: 1   MAVVLHHHRRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET 60

Query: 61  EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL 120
           EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL
Sbjct: 61  EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL 120

Query: 121 YLP 124
           YLP
Sbjct: 121 YLP 123

[Close]

BLAST of Carg10047 vs. NCBI nr
Match: XP_023000566.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-34
Identity = 83/126 (65.87%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MAVVL---HHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKT 60
           MAVVL   HH+H RR   PTL L A +LLLASAIAARPTPI ++   +P        T  
Sbjct: 1   MAVVLLHHHHNHHRRRRLPTLFLFAVVLLLASAIAARPTPIKET--QLP--------TGG 60

Query: 61  EETEFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCG 120
           EE     +TRRRL G GSSPP CRSKCGSC+PCTAVH+PI PGLSLP EYYPEAWRCKCG
Sbjct: 61  EER---VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCG 113

Query: 121 NSLYLP 124
           NSLY+P
Sbjct: 121 NSLYMP 113

[Close]

BLAST of Carg10047 vs. NCBI nr
Match: XP_023513820.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.0 bits (380), Expect = 6.8e-33
Identity = 84/127 (66.14%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MAVVL---HHHHRRRPPRPTLLLLA-ALLLLASAIAARPTPIGKSLNSIPLINPFLGFTK 60
           MAVVL   HH+H RR   PTL L A  LLLLASAIAARPTPI ++   +P        T 
Sbjct: 1   MAVVLLHHHHNHHRRRCLPTLFLFAVVLLLLASAIAARPTPIKET--QLP--------TG 60

Query: 61  TEETEFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKC 120
            EE     +TRRRL G GSSPP CRSKCGSC+PCTAVH+PI PGLSLP EYYPEAWRCKC
Sbjct: 61  GEER---VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKC 114

Query: 121 GNSLYLP 124
           GNSLY+P
Sbjct: 121 GNSLYMP 114

[Close]

BLAST of Carg10047 vs. NCBI nr
Match: KAG6593874.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 82/127 (64.57%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MAVVL---HHHHRRRPPRPTLLLLA-ALLLLASAIAARPTPIGKSLNSIPLINPFLGFTK 60
           MAVVL   HH+H RR   PTL L A  LLLL SAIAARPTPI ++             T 
Sbjct: 1   MAVVLLHHHHNHHRRRRLPTLFLFAVVLLLLVSAIAARPTPIKETQL----------LTG 60

Query: 61  TEETEFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKC 120
            EE     +TRRRL G GSSPP CRSKCGSC+PCTAVH+PI PGLSLP EYYPEAWRCKC
Sbjct: 61  GEER---VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKC 114

Query: 121 GNSLYLP 124
           GNSLY+P
Sbjct: 121 GNSLYMP 114

[Close]

BLAST of Carg10047 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.3e-22
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 66  TRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 124
           + +R  G GSSPP CRSKCG C PC  VH+PIQPGLS+P EYYPEAWRCKCGN L++P
Sbjct: 52  SNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Carg10047 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 16  PTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTE--ETEFPA--MTRRRLR 75
           PTL++ A LL  +S+ AA          S+   +  LG  K E   +  P   + ++RL 
Sbjct: 6   PTLIVYAFLLFFSSSSAA----------SLQRPSGGLGQGKKEIARSGLPGQIVDQKRLG 65

Query: 76  GLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 124
           G GS PP+CR KCG C PC AVH+PIQPGL +P EYYPEAWRCKCGN L++P
Sbjct: 66  GPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Carg10047 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-21
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 64  AMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 123
           A  RR LRGLGSSPP C SKCG C+PC  VH+P+ PG  + +EYYPEAWRCKCGN LY+P
Sbjct: 97  AELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of Carg10047 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 73  LGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 124
           L SSPP C++KC  C PC    I + P  + P +YYP+ W C C N +Y P
Sbjct: 466 LSSSPPNCKNKCKGCQPCKPKLIIVHP--NKPQDYYPQKWVCSCHNKIYNP 514

[Close]

BLAST of Carg10047 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 73  LGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 124
           L SSPP C++KC  C PC    I + P  + P +YYP+ W C C N +Y P
Sbjct: 459 LNSSPPNCKNKCKGCQPCKPKLIIVHP--NQPEDYYPQRWVCSCHNKIYNP 507

[Close]

BLAST of Carg10047 vs. ExPASy TrEMBL
Match: A0A6J1KG67 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111494809 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 83/126 (65.87%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MAVVL---HHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKT 60
           MAVVL   HH+H RR   PTL L A +LLLASAIAARPTPI ++   +P        T  
Sbjct: 1   MAVVLLHHHHNHHRRRRLPTLFLFAVVLLLASAIAARPTPIKET--QLP--------TGG 60

Query: 61  EETEFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCG 120
           EE     +TRRRL G GSSPP CRSKCGSC+PCTAVH+PI PGLSLP EYYPEAWRCKCG
Sbjct: 61  EER---VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCG 113

Query: 121 NSLYLP 124
           NSLY+P
Sbjct: 121 NSLYMP 113

[Close]

BLAST of Carg10047 vs. ExPASy TrEMBL
Match: A0A6J1ERG1 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111436899 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 83/131 (63.36%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MAVVL---HHHHRRRPPRPTLLLLAA-----LLLLASAIAARPTPIGKSLNSIPLINPFL 60
           MAVVL   HH+H RR   PTL L A      LLLLASAIAARPTPI ++           
Sbjct: 1   MAVVLLHHHHNHHRRRRLPTLFLFAVVLLLLLLLLASAIAARPTPIKETQL--------- 60

Query: 61  GFTKTEETEFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAW 120
             T  EE     +TRRRL G GSSPP CRSKCGSC+PCTAVH+PI PGLSLP EYYPEAW
Sbjct: 61  -LTGGEER---VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAW 118

Query: 121 RCKCGNSLYLP 124
           RCKCGNSLY+P
Sbjct: 121 RCKCGNSLYMP 118

[Close]

BLAST of Carg10047 vs. ExPASy TrEMBL
Match: A0A0A0LKT0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G222070 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 78/123 (63.41%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET 60
           MA++L  HHRRR P    L L  LLLL S+IAARPTPI +     P + P         T
Sbjct: 1   MALLLLLHHRRRTP----LSLLLLLLLTSSIAARPTPIDQEAE--PKLLP-------PGT 60

Query: 61  EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL 120
           + P +TRRRL G GSSPP CRSKCGSC PCTAVH+PIQPGLSLP EYYPEAWRCKCGN+L
Sbjct: 61  KEPFLTRRRLSGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNTL 110

Query: 121 YLP 124
           Y+P
Sbjct: 121 YMP 110

[Close]

BLAST of Carg10047 vs. ExPASy TrEMBL
Match: A0A5A7UQS2 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001330 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 75/123 (60.98%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 1   MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET 60
           MAV+L HH RR     T L L  LLLL S+IAARPTPI +   +               T
Sbjct: 1   MAVLLLHHCRR-----THLTLFLLLLLTSSIAARPTPIDEEAEA----------KLPAGT 60

Query: 61  EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL 120
               +TRRRL G GSSPP CRSKCGSC PCTAVH+PIQPGLSLP EYYPEAWRCKCGN+L
Sbjct: 61  RERVLTRRRLTGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNTL 108

Query: 121 YLP 124
           Y+P
Sbjct: 121 YMP 108

[Close]

BLAST of Carg10047 vs. ExPASy TrEMBL
Match: A0A1S3BMN7 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103491230 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 75/123 (60.98%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 1   MAVVLHHHHRRRPPRPTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTEET 60
           MAV+L HH RR     T L L  LLLL S+IAARPTPI +   +               T
Sbjct: 1   MAVLLLHHCRR-----THLTLFLLLLLTSSIAARPTPIDEEAEA----------KLPAGT 60

Query: 61  EFPAMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSL 120
               +TRRRL G GSSPP CRSKCGSC PCTAVH+PIQPGLSLP EYYPEAWRCKCGN+L
Sbjct: 61  RERVLTRRRLTGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNTL 108

Query: 121 YLP 124
           Y+P
Sbjct: 121 YMP 108

[Close]

BLAST of Carg10047 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-23
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 66  TRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 124
           + +R  G GSSPP CRSKCG C PC  VH+PIQPGLS+P EYYPEAWRCKCGN L++P
Sbjct: 52  SNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Carg10047 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-22
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 16  PTLLLLAALLLLASAIAARPTPIGKSLNSIPLINPFLGFTKTE--ETEFPA--MTRRRLR 75
           PTL++ A LL  +S+ AA          S+   +  LG  K E   +  P   + ++RL 
Sbjct: 6   PTLIVYAFLLFFSSSSAA----------SLQRPSGGLGQGKKEIARSGLPGQIVDQKRLG 65

Query: 76  GLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 124
           G GS PP+CR KCG C PC AVH+PIQPGL +P EYYPEAWRCKCGN L++P
Sbjct: 66  GPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Carg10047 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-22
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 64  AMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 123
           A  RR LRGLGSSPP C SKCG C+PC  VH+P+ PG  + +EYYPEAWRCKCGN LY+P
Sbjct: 171 AELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230

[Close]

BLAST of Carg10047 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-22
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 64  AMTRRRLRGLGSSPPICRSKCGSCSPCTAVHIPIQPGLSLPSEYYPEAWRCKCGNSLYLP 123
           A  RR LRGLGSSPP C SKCG C+PC  VH+P+ PG  + +EYYPEAWRCKCGN LY+P
Sbjct: 97  AELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of Carg10047 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 8.0e-08
Identity = 33/96 (34.38%), Postives = 43/96 (44.79%), Query Frame = 0


Query: 54  FTKTEETEFPAMTRRRLRGL-GSSPPIC-RSKCGSCSPCTAVHIPIQPGLSLPS------ 113
           FTK+ + +   M    +RGL GS PP C R +C SC  C A+ +P  P   L S      
Sbjct: 37  FTKSGDQDVKMM----MRGLIGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSS 96

Query: 114 ------------------EYYPEAWRCKCGNSLYLP 124
                              Y P +W+CKCGNS+Y P
Sbjct: 97  SSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

The following BLAST results are available for this feature:

BLAST of Carg10047 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013526.1	3.9e-65	100.00	EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs...	[more]
KAG6574959.1	3.3e-64	99.19	EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs...	[more]
XP_023000566.1	4.7e-34	65.87	EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita maxima]	[more]
XP_023513820.1	6.8e-33	66.14	EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita pepo subsp. pepo]	[more]
KAG6593874.1	2.6e-32	64.57	EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Carg10047 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3I3	7.3e-22	70.69	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	1.6e-21	49.11	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q1PEY6	8.1e-21	68.33	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q7M1E7	1.3e-07	45.10	Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]
Q9FY19	1.3e-07	45.10	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]

BLAST of Carg10047 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KG67	2.3e-34	65.87	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1ERG1	1.2e-32	63.36	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LKT0	1.6e-32	63.41	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G222...	[more]
A0A5A7UQS2	2.6e-30	60.98	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BMN7	2.6e-30	60.98	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103491230...	[more]

BLAST of Carg10047 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14723.1	5.2e-23	70.69	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	1.2e-22	49.11	allergen-related	[more]
AT2G30370.1	5.7e-22	68.33	allergen-related	[more]
AT2G30370.2	5.7e-22	68.33	allergen-related	[more]
AT4G37810.1	8.0e-08	34.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 73..123 e-value: 1.7E-19 score: 69.5
None	No IPR available	PANTHER	PTHR33109:SF69	PUTATIVE, EXPRESSED-RELATED	coord: 17..123
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 17..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10047-RA	Carg10047-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development