Carg09957 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09957
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 2337289 .. 2339828 (+)
RNA-Seq ExpressionCarg09957
SyntenyCarg09957
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACCTGTCAAGTCTCAAATGGGTGGAAGGAACCGACGACTGCTCTCTGCCTACGAAAAACCAATCCAAATCCCTATTGATTGTTCATAAAACTATTCAATGGAAGAATGCCCCTTTGAGAGATGAAGAGCTGCCTATGTCAGGAGAGGAGATGTTATGGACAGACAGATTCCTAACCGTATACTATTGTGCGGGGAGACATCGTTTCTAACCACCATTCTATTGTGGAGGGACGTGATTTTTATCAATATTAGTGCGAGTGGATTAGAAATATTGATTCTAGCAGGGATTCTGAGTATTTGGTCTCACCTTTCGAAACGAGTGGAATAAGAACTCAAACTTTTGGCCTCGTGATTGAAGATAGGTAAGACTGGGAGGTGAAAAGAAAAGAAGGAACACACAAAAGAGGATAAGACGATAATGAAGTGAATAAGTGCGGTCTTCTCTTGTCGCATTATCATCATCGAGAATCCCACCTTTACCATTTCTGTATGTTCTTTCTTCTCATCTTTTTAAACTGGCAAAATTAAACGTATAGTTAGCCATATATGATGTTGGTCATCTGTAGATCTTTCCACTCACGCCACGCTTCTTAGCTTTTTTGTTTGCTTAGGTTGCGTGTCTCCAATTTATCATCTTAGCAGCCATAATAATGATAACTATAACGACAATTTAAGACTAAACATGTTTTTTAGGAACTGTATATTATTTTATGGTCAACATTACGAAGTTATCTAATTTTTGTTGTGATCATTTTGAACTGTAACAGGTGGGCAGAGAAGAACCAGGAAGATCACCAACCCATCACCATTCTTATGAGGTATGAGTTCTTTTCTAAGTCTAAACTTTAGAATATTTATATCTGGAAAGCTATGAGCATTATCTCCATCTTTGTGAAGTCTTTATCTTCCTTTCTTATTTCTTGTAGACCTCAAACCCCACACATTACGCGTCCGACACTGACCCTCTTCAATTCTCCTTTTCATTTTTCTAGTACCAAAATTCCCACCAAAAAGCCACCCAATCCAACCCTGAGTCCCAGTGTTCACTCCATACACACAGACAGCGATTGCGACAATAAAAAAAGAACCCATGAAATTATGGGACTCCCGAAATCTGTTTGGTTCACTCACTATGCTCTGAAACTAAAACCCCACTTAGAGAGACCTTTCAAGGGCTTTGGGCCGTATATTTGGGCTTTGATTGAGGCTCTTTCAGTGGGCCAATTTTCAAGCCCATTCTATAGTACATGTAGGCCCAACACACCTTTTGAATACCTGAAAATTCTAGCATAATTGATATAAAAATATAACAAAAATAGTAACTAAGAAGTTAACATAAACATTTTAAACATACCCACAAAAATCACATAGATATCCGTGACCTTTTAGTTGAGTCAGAAATATATACTTAAACTTTGTTAGACAAACACAACTCTCCACAATGATATGATATTGTCCACTTTGAGTAGAAGCTCTCATAGTTTTGCTTTGGCCTCCTCAAAAGGCTTTGTGCCAATGGAGAGAGTATTCTTTGATTAGATTATAAACCCATGATCATTCCCTAAATTAGCCAATGTCGGACTTTCATCATCCAACAAACTTGTCGCACCGAAAAAAAAAAAACCATTTAAACTATATCATGACTTATATGTAAATAGTTGCCTCATACAAAATTTCAAAGGACAACGTTGTTTTAGTTGCATTGGCATTTAAATCAAATGCACATATCACATAAAAACAACCTTAAAATAAATAAAGGGATTCAAGTGGGCTTCATGTCATAGAACAATGAAACCCACAATGAGTGATAATCATCGTCGGTTTCCATCCTCTCTCTATTACAACGACAGCAAACTCTTGGGCTTCCATCTCGTCCATCCAGCGGCCCAGATACTCTTGGGCTCCTGCTCGGCGGTATCAGCCTCATCATTCTCCCCTGCGGCGGTCCATTCAGCTTTGGGCTTCTACTCGAGGCCCAATCAGATACTCTCCCATCCAGAGGCCCAGATGATCTCGGGCTTCTTGGAAACATGGGCCTCTCTTTCCTATCCAACGGCCCAGATAGCTTTAGGCTTTTACTGTTCGTCATTAACTTCTCGTGCGTTCTCCCGTCCAACGGCCCGGACAGCGACACGTGTTTACTGCGTCGTTTCGGCGGCTTGAGCACCTCCTTAACCTCCAGTTTCCGGCTGAGATCCTCGCTGTAGGTAATCGGCTCTGGGGAAACCACCGCCGCGTCCTCCCGGAAAATCCCCTTCTCCGACTTGGCGTTGGTGAAAATAAGCTTCCTGAGGCAGTTCCGGAGGCAGTTCTTTGTCTTGACGAAAGCGGAAAGGAGCAGTTTCTTTTGGGTGGCTTCTTCTCTGTTGCATTTGGCGAGTTTCAGAATCTCGAGCCTGTGTTTGGCGATGGAAACTCCGATTTTCTGGAGAAAATCGTGGTTGAAACGAGGAATGTCTTCGGGTCTGAGGCCATTTCGGGCGAAAACGAGGCCGTATTCGTAAGTGTGAAGTGGGTCGAGGCCGGTTCTTGA

mRNA sequence

ATGGTTGACCTGTCAAGTCTCAAATGGGTGGAAGGAACCGACGACTGCTCTCTGCCTACGAAAAACCAATCCAAATCCCTATTGATTGTTCATAAAACTATTCAATGGAAGAATGCCCCTTTGAGAGATGAAGAGCTGCCTATGTCAGGAGAGGAGATGGATTCTGAGTATTTGGTCTCACCTTTCGAAACGAGTGGAATAAGAACTCAAACTTTTGGCCTCGTGATTGAAGATAGGTGGGCAGAGAAGAACCAGGAAGATCACCAACCCATCACCATTCTTATGAGTACCAAAATTCCCACCAAAAAGCCACCCAATCCAACCCTGAGTCCCAGTGTTCACTCCATACACACAGACAGCGATTGCGACAATAAAAAAAGAACCCATGAAATTATGGGACTCCCGAAATCTCAAACTCTTGGGCTTCCATCTCGTCCATCCAGCGGCCCAGATACTCTTGGGCTCCTGCTCGGCGGTATCAGCCTCATCATTCTCCCCTGCGGCGGTCCATTCAGCTTTGGGCTTCTACTCGAGGCCCAATCAGATACTCTCCCATCCAGAGGCCCAGATGATCTCGGGCTTCTTGGAAACATGGGCCTCTCTTTCCTATCCAACGGCCCAGATAGCTTTAGGCTTTTACTGTTCGTCATTAACTTCTCGTGCGTTCTCCCGTCCAACGGCCCGGACAGCGACACGTGTTTACTGCGTCGTTTCGGCGGCTTGAGCACCTCCTTAACCTCCAGTAATCGGCTCTGGGGAAACCACCGCCGCGTCCTCCCGGAAAATCCCCTTCTCCGACTTGGCGTTGGTGAAAATAAGCTTCCTGAGGCAGTTCCGGAGGCAGTTCTTTGTCTTGACGAAAGCGGAAAGGAGCAGTTTCTTTTGGGTGGCTTCTTCTCTGTTGCATTTGGCGAGTTTCAGAATCTCGAGCCTGTGTTTGGCGATGGAAACTCCGATTTTCTGGAGAAAATCGTGGTTGAAACGAGGAATGTCTTCGGGTCTGAGGCCATTTCGGGCGAAAACGAGGCCGTATTCGTAAGTGTGAAGTGGGTCGAGGCCGGTTCTTGA

Coding sequence (CDS)

ATGGTTGACCTGTCAAGTCTCAAATGGGTGGAAGGAACCGACGACTGCTCTCTGCCTACGAAAAACCAATCCAAATCCCTATTGATTGTTCATAAAACTATTCAATGGAAGAATGCCCCTTTGAGAGATGAAGAGCTGCCTATGTCAGGAGAGGAGATGGATTCTGAGTATTTGGTCTCACCTTTCGAAACGAGTGGAATAAGAACTCAAACTTTTGGCCTCGTGATTGAAGATAGGTGGGCAGAGAAGAACCAGGAAGATCACCAACCCATCACCATTCTTATGAGTACCAAAATTCCCACCAAAAAGCCACCCAATCCAACCCTGAGTCCCAGTGTTCACTCCATACACACAGACAGCGATTGCGACAATAAAAAAAGAACCCATGAAATTATGGGACTCCCGAAATCTCAAACTCTTGGGCTTCCATCTCGTCCATCCAGCGGCCCAGATACTCTTGGGCTCCTGCTCGGCGGTATCAGCCTCATCATTCTCCCCTGCGGCGGTCCATTCAGCTTTGGGCTTCTACTCGAGGCCCAATCAGATACTCTCCCATCCAGAGGCCCAGATGATCTCGGGCTTCTTGGAAACATGGGCCTCTCTTTCCTATCCAACGGCCCAGATAGCTTTAGGCTTTTACTGTTCGTCATTAACTTCTCGTGCGTTCTCCCGTCCAACGGCCCGGACAGCGACACGTGTTTACTGCGTCGTTTCGGCGGCTTGAGCACCTCCTTAACCTCCAGTAATCGGCTCTGGGGAAACCACCGCCGCGTCCTCCCGGAAAATCCCCTTCTCCGACTTGGCGTTGGTGAAAATAAGCTTCCTGAGGCAGTTCCGGAGGCAGTTCTTTGTCTTGACGAAAGCGGAAAGGAGCAGTTTCTTTTGGGTGGCTTCTTCTCTGTTGCATTTGGCGAGTTTCAGAATCTCGAGCCTGTGTTTGGCGATGGAAACTCCGATTTTCTGGAGAAAATCGTGGTTGAAACGAGGAATGTCTTCGGGTCTGAGGCCATTTCGGGCGAAAACGAGGCCGTATTCGTAAGTGTGAAGTGGGTCGAGGCCGGTTCTTGA

Protein sequence

MVDLSSLKWVEGTDDCSLPTKNQSKSLLIVHKTIQWKNAPLRDEELPMSGEEMDSEYLVSPFETSGIRTQTFGLVIEDRWAEKNQEDHQPITILMSTKIPTKKPPNPTLSPSVHSIHTDSDCDNKKRTHEIMGLPKSQTLGLPSRPSSGPDTLGLLLGGISLIILPCGGPFSFGLLLEAQSDTLPSRGPDDLGLLGNMGLSFLSNGPDSFRLLLFVINFSCVLPSNGPDSDTCLLRRFGGLSTSLTSSNRLWGNHRRVLPENPLLRLGVGENKLPEAVPEAVLCLDESGKEQFLLGGFFSVAFGEFQNLEPVFGDGNSDFLEKIVVETRNVFGSEAISGENEAVFVSVKWVEAGS
Homology
[Close]
BLAST of Carg09957 vs. NCBI nr
Match: KAG7023480.1 (hypothetical protein SDJN02_14505, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 718.0 bits (1852), Expect = 4.0e-203
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0 

Query: 1   MVDLSSLKWVEGTDDCSLPTKNQSKSLLIVHKTIQWKNAPLRDEELPMSGEEMDSEYLVS 60
           MVDLSSLKWVEGTDDCSLPTKNQSKSLLIVHKTIQWKNAPLRDEELPMSGEEMDSEYLVS
Sbjct: 1   MVDLSSLKWVEGTDDCSLPTKNQSKSLLIVHKTIQWKNAPLRDEELPMSGEEMDSEYLVS 60

Query: 61  PFETSGIRTQTFGLVIEDRWAEKNQEDHQPITILMSTKIPTKKPPNPTLSPSVHSIHTDS 120
           PFETSGIRTQTFGLVIEDRWAEKNQEDHQPITILMSTKIPTKKPPNPTLSPSVHSIHTDS
Sbjct: 61  PFETSGIRTQTFGLVIEDRWAEKNQEDHQPITILMSTKIPTKKPPNPTLSPSVHSIHTDS 120

Query: 121 DCDNKKRTHEIMGLPKSQTLGLPSRPSSGPDTLGLLLGGISLIILPCGGPFSFGLLLEAQ 180
           DCDNKKRTHEIMGLPKSQTLGLPSRPSSGPDTLGLLLGGISLIILPCGGPFSFGLLLEAQ
Sbjct: 121 DCDNKKRTHEIMGLPKSQTLGLPSRPSSGPDTLGLLLGGISLIILPCGGPFSFGLLLEAQ 180

Query: 181 SDTLPSRGPDDLGLLGNMGLSFLSNGPDSFRLLLFVINFSCVLPSNGPDSDTCLLRRFGG 240
           SDTLPSRGPDDLGLLGNMGLSFLSNGPDSFRLLLFVINFSCVLPSNGPDSDTCLLRRFGG
Sbjct: 181 SDTLPSRGPDDLGLLGNMGLSFLSNGPDSFRLLLFVINFSCVLPSNGPDSDTCLLRRFGG 240

Query: 241 LSTSLTSSNRLWGNHRRVLPENPLLRLGVGENKLPEAVPEAVLCLDESGKEQFLLGGFFS 300
           LSTSLTSSNRLWGNHRRVLPENPLLRLGVGENKLPEAVPEAVLCLDESGKEQFLLGGFFS
Sbjct: 241 LSTSLTSSNRLWGNHRRVLPENPLLRLGVGENKLPEAVPEAVLCLDESGKEQFLLGGFFS 300

Query: 301 VAFGEFQNLEPVFGDGNSDFLEKIVVETRNVFGSEAISGENEAVFVSVKWVEAGS 356
           VAFGEFQNLEPVFGDGNSDFLEKIVVETRNVFGSEAISGENEAVFVSVKWVEAGS
Sbjct: 301 VAFGEFQNLEPVFGDGNSDFLEKIVVETRNVFGSEAISGENEAVFVSVKWVEAGS 355

[Close]
BLAST of Carg09957 vs. NCBI nr
Match: RYR30525.1 (hypothetical protein Ahy_B01g055280 isoform B [Arachis hypogaea])

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-11
Identity = 74/208 (35.58%), Postives = 95/208 (45.67%), Query Frame = 0 

Query: 183 TLPSRGPDDLG----LLGNMGL-------------------SFLSNGPDSFRLLLFVINF 242
           +L SRGPD+LG    LL + GL                      SNGPDS   LL    F
Sbjct: 2   SLASRGPDNLGPLVSLLSSTGLIADEDLKGLLLVYTIIRSCILPSNGPDSLMALLAGATF 61

Query: 243 SCVLPSNGPDSDTCLLR-RFGGLSTSLTSSNRLWGNH-----------RRVLPENPLLRL 302
           SC+LPSNGPDS   LLR R   L         L  +H           RR L     + +
Sbjct: 62  SCILPSNGPDSAMVLLRHRQCWLFLLFLLLTGLIPHHHTFPFPLVLYLRRWLRHVLEVDI 121

Query: 303 GVGENKLPEAVPEAVLCLDESGKEQFLLGGFFSVAFGEFQNLEPVFGDGNSDFLEKIVVE 356
               +KL  A+PEA L   E G E  L            +NLEPV G+G+S  LE++VVE
Sbjct: 122 VAVNHKLVHALPEASL---EDGGELLL------------ENLEPVLGNGDSHALEELVVE 181

[Close]
BLAST of Carg09957 vs. ExPASy TrEMBL
Match: A0A445AVQ2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B01g055280 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 74/208 (35.58%), Postives = 95/208 (45.67%), Query Frame = 0 

Query: 183 TLPSRGPDDLG----LLGNMGL-------------------SFLSNGPDSFRLLLFVINF 242
           +L SRGPD+LG    LL + GL                      SNGPDS   LL    F
Sbjct: 2   SLASRGPDNLGPLVSLLSSTGLIADEDLKGLLLVYTIIRSCILPSNGPDSLMALLAGATF 61

Query: 243 SCVLPSNGPDSDTCLLR-RFGGLSTSLTSSNRLWGNH-----------RRVLPENPLLRL 302
           SC+LPSNGPDS   LLR R   L         L  +H           RR L     + +
Sbjct: 62  SCILPSNGPDSAMVLLRHRQCWLFLLFLLLTGLIPHHHTFPFPLVLYLRRWLRHVLEVDI 121

Query: 303 GVGENKLPEAVPEAVLCLDESGKEQFLLGGFFSVAFGEFQNLEPVFGDGNSDFLEKIVVE 356
               +KL  A+PEA L   E G E  L            +NLEPV G+G+S  LE++VVE
Sbjct: 122 VAVNHKLVHALPEASL---EDGGELLL------------ENLEPVLGNGDSHALEELVVE 181

The following BLAST results are available for this feature:
BLAST of Carg09957 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023480.14.0e-203100.00hypothetical protein SDJN02_14505, partial [Cucurbita argyrosperma subsp. argyro... [more]
RYR30525.13.2e-1135.58hypothetical protein Ahy_B01g055280 isoform B [Arachis hypogaea][more]
BLAST of Carg09957 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09957 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A445AVQ21.6e-1135.58Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B01g055280 PE=4 SV=1[more]
BLAST of Carg09957 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09957-RACarg09957-RAmRNA