Carg09919 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09919
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionEpidermal patterning factor-like protein
LocationCarg_Chr10: 2545673 .. 2546095 (-)
RNA-Seq ExpressionCarg09919
SyntenyCarg09919
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTCTCTCTGCCTTCACAAATTATCACTCAAATATGGCTTTAAAAAGCTCTCTCCTTCTCATTCTTCCTCTCATATTTTCCCTTTCTCTCTCTCACCCCACATCAGGTAAACACCATACTCATATTTATGAATCAATTTGTTAGTGTTTTTTTCACTTTTTTTGGTGTTTGGAGCCTCAGGGAATGAGGATTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCGCCACGGTGCTTCAACAAGTGCTTGAATTGCAGGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGGGGTTCATAATAATGCTTTTTCTAGTTTGGAGGCCGCTCTTCCAGCCCCTAGGGATGATGCCTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTCCAACCTTAG

mRNA sequence

TCTCTCTCTCTCTGCCTTCACAAATTATCACTCAAATATGGCTTTAAAAAGCTCTCTCCTTCTCATTCTTCCTCTCATATTTTCCCTTTCTCTCTCTCACCCCACATCAGGGAATGAGGATTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCGCCACGGTGCTTCAACAAGTGCTTGAATTGCAGGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGGGGTTCATAATAATGCTTTTTCTAGTTTGGAGGCCGCTCTTCCAGCCCCTAGGGATGATGCCTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTCCAACCTTAG

Coding sequence (CDS)

ATGGCTTTAAAAAGCTCTCTCCTTCTCATTCTTCCTCTCATATTTTCCCTTTCTCTCTCTCACCCCACATCAGGGAATGAGGATTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCGCCACGGTGCTTCAACAAGTGCTTGAATTGCAGGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGGGGTTCATAATAATGCTTTTTCTAGTTTGGAGGCCGCTCTTCCAGCCCCTAGGGATGATGCCTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTCCAACCTTAG

Protein sequence

MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVISQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP
Homology
[Close]
BLAST of Carg09919 vs. NCBI nr
Match: XP_022961150.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita moschata] >KAG6589847.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023517.1 EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.5 bits (545), Expect = 4.2e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60

Query: 61  SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP
Sbjct: 61  SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 103

[Close]
BLAST of Carg09919 vs. NCBI nr
Match: XP_022987916.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita maxima])

HSP 1 Score: 212.2 bits (539), Expect = 2.1e-51
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MALKSSLLLILPLIFSLSLSHPTSGNEDSS+QKELVIGSRPPRCFNKCLNCRPCVAALVI
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSRQKELVIGSRPPRCFNKCLNCRPCVAALVI 60

Query: 61  SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKGVHNNAFS+LEAALPAPRDDAYYLLSWKCKCKDKYFQP
Sbjct: 61  SQRHKGVHNNAFSNLEAALPAPRDDAYYLLSWKCKCKDKYFQP 103

[Close]
BLAST of Carg09919 vs. NCBI nr
Match: XP_023516493.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 1.3e-50
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MALKSSLLLILPLIFSLSLSHPTSGNEDS KQKELVIGSRPPRCFNKCLNCRPCVAALVI
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSPKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60

Query: 61  SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKGVHN+AFS+LEAALPAPRDDAYYLLSWKCKCKDKYFQP
Sbjct: 61  SQRHKGVHNSAFSNLEAALPAPRDDAYYLLSWKCKCKDKYFQP 103

[Close]
BLAST of Carg09919 vs. NCBI nr
Match: XP_022933441.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7021781.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MAL +SL LILPLIFSLS+ HPTSGNED SKQKEL IGSRPP+CFNKCLNC+PCVAALVI
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNED-SKQKELAIGSRPPKCFNKCLNCKPCVAALVI 60

Query: 61  SQRHKGVHNN---AFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKG  +N     S+LEAA   P+DDAYYLLSWKCKCKDKYFQP
Sbjct: 61  SQRHKGDDSNNGGVVSNLEAA-QVPKDDAYYLLSWKCKCKDKYFQP 104

[Close]
BLAST of Carg09919 vs. NCBI nr
Match: XP_023531007.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MAL +SL LILPLIFSLS+ HPTSGNED SKQKEL IGSRPP+CFNKCLNC+PCVAALVI
Sbjct: 50  MALNNSLFLILPLIFSLSVFHPTSGNED-SKQKELAIGSRPPKCFNKCLNCKPCVAALVI 109

Query: 61  SQRHKGVHNN---AFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKG  +N     S+LEAA   P+DDAYYLLSWKCKCKDKYFQP
Sbjct: 110 SQRHKGDDSNNGGVVSNLEAA-QVPKDDAYYLLSWKCKCKDKYFQP 153

[Close]
BLAST of Carg09919 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-08
Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 8   LLILPLIFSLSLSHPTSG-NEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVISQRHKG 67
           L +  + FSL   H  SG +    + KE V+GS PP C  KC NC+PC+  L      +G
Sbjct: 16  LFVANIFFSLLSLHCISGAHGHQQRMKESVMGSEPPVCATKCRNCKPCLPYLF---DIRG 75

Query: 68  VHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
            H++   S          + YY + W C+C+D+ F+P
Sbjct: 76  AHDDDDDS----------EPYYPVKWICRCRDRVFEP 99

[Close]
BLAST of Carg09919 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-06
Identity = 37/120 (30.83%), Postives = 52/120 (43.33%), Query Frame = 0 

Query: 2   ALKSSLLLILPLIFSLSLSHPTSG-----NEDSSKQKELV-----IGSRPPRCFNKCLNC 61
           A+  S LL+LPLI  L ++   S          S Q  L+     +GS PP C N+C NC
Sbjct: 3   AIYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNC 62

Query: 62  RPCVAALV--ISQRHKGVHNNAFSSLEAALPA------PRDDAYYLLSWKCKCKDKYFQP 104
            PC+A  V  +  R +    N FS      P+       +   Y  + WKC C   ++ P
Sbjct: 63  HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]
BLAST of Carg09919 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 30/94 (31.91%), Postives = 37/94 (39.36%), Query Frame = 0 

Query: 16  SLSLSHPTS------GNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVISQRHKGVHN 75
           S S  HP +      G  D   +  +++GSRPP C NKC  C PC A LVI  R      
Sbjct: 439 SKSHKHPKTVMVKNMGAYDKGNRTRILLGSRPPNCTNKCHGCSPCKAKLVIVHR------ 498

Query: 76  NAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
                    +P      YY   W C    K + P
Sbjct: 499 --------IMP----QEYYPQRWMCSRHGKIYHP 514

[Close]
BLAST of Carg09919 vs. ExPASy TrEMBL
Match: A0A6J1HB97 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461746 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.0e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60

Query: 61  SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP
Sbjct: 61  SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 103

[Close]
BLAST of Carg09919 vs. ExPASy TrEMBL
Match: A0A6J1JFP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485317 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MALKSSLLLILPLIFSLSLSHPTSGNEDSS+QKELVIGSRPPRCFNKCLNCRPCVAALVI
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSRQKELVIGSRPPRCFNKCLNCRPCVAALVI 60

Query: 61  SQRHKGVHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKGVHNNAFS+LEAALPAPRDDAYYLLSWKCKCKDKYFQP
Sbjct: 61  SQRHKGVHNNAFSNLEAALPAPRDDAYYLLSWKCKCKDKYFQP 103

[Close]
BLAST of Carg09919 vs. ExPASy TrEMBL
Match: A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 84/106 (79.25%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MAL +SL LILPLIFSLS+ HPTSGNED SKQKEL IGSRPP+CFNKCLNC+PCVAALVI
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNED-SKQKELAIGSRPPKCFNKCLNCKPCVAALVI 60

Query: 61  SQRHKGVHNN---AFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQRHKG  +N     S+LEAA   P+DDAYYLLSWKCKCKDKYFQP
Sbjct: 61  SQRHKGDDSNNGGVVSNLEAA-QVPKDDAYYLLSWKCKCKDKYFQP 104

[Close]
BLAST of Carg09919 vs. ExPASy TrEMBL
Match: A0A6J1F4W6 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.7e-36
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPT-----SGNEDSSKQKELVIGSRPPRCFNKCLNCRPCV 60
           MAL +SL LILPLIFSLS+ HPT     SGNED SKQKEL IGSRPP+CFNKCLNC+PCV
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSVLGISGNED-SKQKELAIGSRPPKCFNKCLNCKPCV 60

Query: 61  AALVISQRHKGVHNN---AFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           AALVISQRHKG  +N     S+LEAA   P+DDAYYLLSWKCKCKDKYFQP
Sbjct: 61  AALVISQRHKGDDSNNGGVVSNLEAA-QVPKDDAYYLLSWKCKCKDKYFQP 109

[Close]
BLAST of Carg09919 vs. ExPASy TrEMBL
Match: A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.0e-35
Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 0 

Query: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVI 60
           MAL +SL LILPLIFSLS+  PTSGNED SKQKEL IGSRPP+CFNKCLNC+PCVAALVI
Sbjct: 67  MALNNSLFLILPLIFSLSVFLPTSGNED-SKQKELAIGSRPPKCFNKCLNCKPCVAALVI 126

Query: 61  SQRHKGVHNN---AFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
           SQR KG  NN     S++EAA   P+DDAYYLLSWKCKCKDKYFQP
Sbjct: 127 SQRLKGYDNNNGGVVSNMEAA-QVPKDDAYYLLSWKCKCKDKYFQP 170

[Close]
BLAST of Carg09919 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 8   LLILPLIFSLSLSHPTSG-NEDSSKQKELVIGSRPPRCFNKCLNCRPCVAALVISQRHKG 67
           L +  + FSL   H  SG +    + KE V+GS PP C  KC NC+PC+  L      +G
Sbjct: 16  LFVANIFFSLLSLHCISGAHGHQQRMKESVMGSEPPVCATKCRNCKPCLPYLF---DIRG 75

Query: 68  VHNNAFSSLEAALPAPRDDAYYLLSWKCKCKDKYFQP 104
            H++   S          + YY + W C+C+D+ F+P
Sbjct: 76  AHDDDDDS----------EPYYPVKWICRCRDRVFEP 99

[Close]
BLAST of Carg09919 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-07
Identity = 37/120 (30.83%), Postives = 52/120 (43.33%), Query Frame = 0 

Query: 2   ALKSSLLLILPLIFSLSLSHPTSG-----NEDSSKQKELV-----IGSRPPRCFNKCLNC 61
           A+  S LL+LPLI  L ++   S          S Q  L+     +GS PP C N+C NC
Sbjct: 3   AIYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNC 62

Query: 62  RPCVAALV--ISQRHKGVHNNAFSSLEAALPA------PRDDAYYLLSWKCKCKDKYFQP 104
            PC+A  V  +  R +    N FS      P+       +   Y  + WKC C   ++ P
Sbjct: 63  HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

The following BLAST results are available for this feature:
BLAST of Carg09919 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961150.14.2e-52100.00EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita moschata] >KAG6589847.1 EP... [more]
XP_022987916.12.1e-5198.06EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita maxima][more]
XP_023516493.11.3e-5097.09EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita pepo subsp. pepo][more]
XP_022933441.12.2e-3779.25EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7... [more]
XP_023531007.12.2e-3779.25EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita pepo subsp. pep... [more]
BLAST of Carg09919 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1G3V92.3e-0834.02EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LFT56.1e-0630.83EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
P432121.2e-0431.91Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1[more]
BLAST of Carg09919 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HB972.0e-52100.00Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1JFP81.0e-5198.06Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1EZ191.1e-3779.25Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1F4W67.7e-3675.68Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I4N21.0e-3577.36Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
BLAST of Carg09919 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80133.11.6e-0934.02unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot... [more]
AT5G10310.14.4e-0730.83unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 36..103
e-value: 2.8E-19
score: 68.8
NoneNo IPR availablePANTHERPTHR33109:SF57EPIDERMAL PATTERNING FACTOR-LIKE PROTEINcoord: 6..103
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 6..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09919-RACarg09919-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane