Carg09859 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09859
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Coiled-coil domain-containing protein 9-like
Location	Carg_Chr10: 2857410 .. 2859098 (-)
RNA-Seq Expression	Carg09859
Synteny	Carg09859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTGGCGGCTATTTGATTTCGGTGGAATCGGCCACCAGGAGATTCAGTTAGACCCTACCCGTTACCTCTGGGGAAGAGGAAGATCATGGCGTCGATATGCCTGCTCAGCTCTAAAACCCTAGTCTTACCGTCGGCGGCTTATCTACCAATGTCCTCTTCATCTTCTACTAGCCATAGTTGCTGTTTTGGCGGCTGCAGATTCTCTTTCCCAAGCAAGCCCATTTCGACTTCTAATTTGATTGTTGTTAGAGGGAGAACGGGGAGGCATGTGGTTCGAATGGCCCCGGAGGAAGAGAAGATCACTCGTCGCAATCCACTCGATTTCCCAATTGTATCTTTCTCACCCTTTCCTTGCGTGTTTGATGTTTTCGGTTTGTAATGGAGCTCTTTTTCGTAGGATTTTAATGTTTTTGCTTCCCGTTCATGGAGATTATGCTTACCCTTTTTATGTAGCTTAGCTAGTATATTTGCTAGATTAAGTTGGGTGGATAATTGGAGCGTTTCCTAGGATTTGATATAATTATTGTTAAATTTTGTCTCTGAAGGTTGTTTAAAATGCTTGTTCATGAGTTATCTTGCCAGGTTCTTCCTGCAACTGTACCTGTCTGCTTGTTTTGGCTATGTCTGCATTTTCCATGGAAAGTATCCATCCCTTGAGCTCAATTGAAAATGGGCGATTTCTATCTTTGGACGAGGGGCACCAACCATTATAATGTTTACTTATTTGCATTGTCACAGATTTCATGAGAATGGGCCATAATTTGTTGCCTGGATATTTTGACTTCATATTTGTGATAGTTCTTGTAGATTGTATTGCACTGGGTAAATGCTTATTGCACTGTAGTTGTTGAACTGAGATTGAAAGAAGATATTGGCAGTCCTCACGATTGTTTGTCGCGCAATTTAATAGTTATATTTATACTTCACCATTTCAGTTTTGGGGGTGTTTTGTTTGTTCAATTTGTTTTCTGTTCTTCTGCCGGGTTTCTACTTGATGATTTTGGAAAATCAACTGACATCATCAGGTTGTTCATAAATTTATCTTGAATCATTTTTGTAAGGGCGCATTTTTTGGTGGTCAATTCGTTTTCTAATTTGAAATTGCTGATGTTCTTACCTGACAAACGAAGTTTGGTTAGTAACTAGTTAGAAAAGTCTATGAAGTGCTTGAGTAGGCTATAGCTGGTGTTCTTTACATTGAATGCTTCTTGACTATTTGGTTGCAGGAGTGGGAGAGGCCAAAGCCAGGGCGTAGGCCAGACATTTTTCCTCAGTTTAGCCCCATGAAAACACCATTGCCACCACCATTGCCGTGTGATCCCCCTGAAGAGGATGAGGAGGAGGAAGAGAAAAAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCCGAGAAGCAGTAGATGATTTTGAAGAACTCCTTGAGTTTTTTGCCCCTTTTCCATCTTCACTTTGTTTTTTGATAGGCTGAAAGCAATAGATATCCCCAGGGGACGATGAGCTGAGATAGTCAACTATGAACCAAACATGTTTGACTGCTACTACTGATATTGCAATTCTATATTAAATTAAAAATCTTTTTAGGATTTCCCATTCTCTGGAGTTTCAACCCCTACTTTAGGCAGTTCATTTTACGAATAATTATCATGAATGATATGCCTTCTCACCCGTTTCCTGTC

mRNA sequence

TTGTGGCGGCTATTTGATTTCGGTGGAATCGGCCACCAGGAGATTCAGTTAGACCCTACCCGTTACCTCTGGGGAAGAGGAAGATCATGGCGTCGATATGCCTGCTCAGCTCTAAAACCCTAGTCTTACCGTCGGCGGCTTATCTACCAATGTCCTCTTCATCTTCTACTAGCCATAGTTGCTGTTTTGGCGGCTGCAGATTCTCTTTCCCAAGCAAGCCCATTTCGACTTCTAATTTGATTGTTGTTAGAGGGAGAACGGGGAGGCATGTGGTTCGAATGGCCCCGGAGGAAGAGAAGATCACTCGTCGCAATCCACTCGATTTCCCAATTGAGTGGGAGAGGCCAAAGCCAGGGCGTAGGCCAGACATTTTTCCTCAGTTTAGCCCCATGAAAACACCATTGCCACCACCATTGCCGTGTGATCCCCCTGAAGAGGATGAGGAGGAGGAAGAGAAAAAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCCGAGAAGCAGTAGATGATTTTGAAGAACTCCTTGAGTTTTTTGCCCCTTTTCCATCTTCACTTTGTTTTTTGATAGGCTGAAAGCAATAGATATCCCCAGGGGACGATGAGCTGAGATAGTCAACTATGAACCAAACATGTTTGACTGCTACTACTGATATTGCAATTCTATATTAAATTAAAAATCTTTTTAGGATTTCCCATTCTCTGGAGTTTCAACCCCTACTTTAGGCAGTTCATTTTACGAATAATTATCATGAATGATATGCCTTCTCACCCGTTTCCTGTC

Coding sequence (CDS)

ATGGCGTCGATATGCCTGCTCAGCTCTAAAACCCTAGTCTTACCGTCGGCGGCTTATCTACCAATGTCCTCTTCATCTTCTACTAGCCATAGTTGCTGTTTTGGCGGCTGCAGATTCTCTTTCCCAAGCAAGCCCATTTCGACTTCTAATTTGATTGTTGTTAGAGGGAGAACGGGGAGGCATGTGGTTCGAATGGCCCCGGAGGAAGAGAAGATCACTCGTCGCAATCCACTCGATTTCCCAATTGAGTGGGAGAGGCCAAAGCCAGGGCGTAGGCCAGACATTTTTCCTCAGTTTAGCCCCATGAAAACACCATTGCCACCACCATTGCCGTGTGATCCCCCTGAAGAGGATGAGGAGGAGGAAGAGAAAAAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCAGATGAGCCCGAGAAGCAGTAG

Protein sequence

MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGRHVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKENPDEPEKQ

Homology

[Close]

BLAST of Carg09859 vs. NCBI nr
Match: KAG7023577.1 (hypothetical protein SDJN02_14603 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR
Sbjct: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
           HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 143

[Close]

BLAST of Carg09859 vs. NCBI nr
Match: KAG6589907.1 (hypothetical protein SDJN03_15330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVR RTGR
Sbjct: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
           HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 143

[Close]

BLAST of Carg09859 vs. NCBI nr
Match: XP_022960823.1 (uncharacterized protein LOC111461515 isoform X1 [Cucurbita moschata])

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICLLSSKTLVLPSAAYLP+SSSSST+HSCCFGGCRFSFPSKPISTSNLIVVR RTGR
Sbjct: 1   MASICLLSSKTLVLPSAAYLPISSSSSTTHSCCFGGCRFSFPSKPISTSNLIVVRRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
           HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 143

[Close]

BLAST of Carg09859 vs. NCBI nr
Match: XP_023516602.1 (uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516603.1 uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516604.1 uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.4 bits (664), Expect = 9.2e-66
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICLLSSKTLVLPSAAYLP+SSSSSTSHSCCFGGCRFSFP+KPIS SNLI+VR RTGR
Sbjct: 1   MASICLLSSKTLVLPSAAYLPISSSSSTSHSCCFGGCRFSFPNKPISASNLIIVRRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
           HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 143

[Close]

BLAST of Carg09859 vs. NCBI nr
Match: XP_022987895.1 (uncharacterized protein LOC111485300 isoform X1 [Cucurbita maxima])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 136/143 (95.10%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICLLSSKTL LPSAAYLP+ SSSSTSHSCCFGGCRFSFP+KPI TSNLI+VR RTGR
Sbjct: 1   MASICLLSSKTLALPSAAYLPI-SSSSTSHSCCFGGCRFSFPNKPIPTSNLIIVRRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
           HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of Carg09859 vs. ExPASy TrEMBL
Match: A0A6J1HA36 (uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461515 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.0e-67
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICLLSSKTLVLPSAAYLP+SSSSST+HSCCFGGCRFSFPSKPISTSNLIVVR RTGR
Sbjct: 1   MASICLLSSKTLVLPSAAYLPISSSSSTTHSCCFGGCRFSFPSKPISTSNLIVVRRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
           HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 143

[Close]

BLAST of Carg09859 vs. ExPASy TrEMBL
Match: A0A6J1JI28 (uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485300 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.1e-64
Identity = 136/143 (95.10%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICLLSSKTL LPSAAYLP+ SSSSTSHSCCFGGCRFSFP+KPI TSNLI+VR RTGR
Sbjct: 1   MASICLLSSKTLALPSAAYLPI-SSSSTSHSCCFGGCRFSFPNKPIPTSNLIIVRRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
           HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of Carg09859 vs. ExPASy TrEMBL
Match: A0A5D3BLF1 (Coiled-coil domain-containing protein 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00600 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.2e-56
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASI L SSKTLV PSA YL +SSSSSTSHSCC GGCR SFP KP+STSNLI  R RTGR
Sbjct: 67  MASISLFSSKTLVSPSATYLRISSSSSTSHSCCLGGCRCSFPIKPLSTSNLIFGRRRTGR 126

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
            VVRMAPEEEK+TRRNPLDFPIEWERP+PGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 127 QVVRMAPEEEKLTRRNPLDFPIEWERPRPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 186

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENP+ PE+Q
Sbjct: 187 EEEKKEEEEENPDKENPEGPEQQ 209

[Close]

BLAST of Carg09859 vs. ExPASy TrEMBL
Match: A0A6J1F0T5 (uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC111441100 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.3e-56
Identity = 125/143 (87.41%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASIC  SSKTLVLPSAAYLP+ SSSSTSHS C  GCR SFP++PI+ SNLI+ R RTGR
Sbjct: 1   MASICPFSSKTLVLPSAAYLPV-SSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
            VVRMAPEEEK+TRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of Carg09859 vs. ExPASy TrEMBL
Match: A0A6J1HQ01 (uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.7e-55
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR 60
           MASICL SSKTLVLPSAAYL + SSSSTSHS C  GCR SFP++PI+ SNLI+ + RTGR
Sbjct: 1   MASICLFSSKTLVLPSAAYLQV-SSSSTSHSFCVRGCRCSFPNRPIANSNLIIGKRRTGR 60

Query: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
            VVRMAPEEEK+TRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 144
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of Carg09859 vs. TAIR 10
Match: AT2G17240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 2795 Blast hits to 943 proteins in 155 species: Archae - 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153; Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink). )

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-33
Identity = 93/145 (64.14%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MASICLLSSKTLVLPSAAYLPMSSS-SSTSHSC-CFGGCRFSFPSKPISTSNLIVVRGRT 60
           MAS+C  S++ L  PS   L   +  SS S S  C     F+F S   S+S     R R 
Sbjct: 1   MASLC--SARFLPSPSLDILSTKTKISSDSRSLGCSSSRVFAFSSVHRSSSR----RNRN 60

Query: 61  GRHVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEED 120
              VV MAPEEEK+TRRNPLDFPIEWERPKPGRRPDIFP+FSPMKTPLPPP+P DPPEED
Sbjct: 61  QLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPPEED 120

Query: 121 EEEEEKKEEEEENPDKENPDEPEKQ 144
           EEEEEKKEEEEENPD+E  ++PEKQ
Sbjct: 121 EEEEEKKEEEEENPDQEEEEQPEKQ 139

[Close]

BLAST of Carg09859 vs. TAIR 10
Match: AT3G24506.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17240.1); Has 4864 Blast hits to 709 proteins in 125 species: Archae - 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410; Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-27
Identity = 78/130 (60.00%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 21  PMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRGRTGR------HVVRMAPEEEKITR 80
           P  SSSS + +       FS  +   S S + V R    R       VV MAPEEEK+TR
Sbjct: 19  PPLSSSSLNRAAPSIFSPFSRINHGFSCSFIAVQRFALSRKTRKQLQVVAMAPEEEKLTR 78

Query: 81  RNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEE-EENPD 140
           RNPLDFPIEWERPKPGRRPDIFP+FSPMK+PLPPP+P DPPEE+EEEEEKKEEE E++P+
Sbjct: 79  RNPLDFPIEWERPKPGRRPDIFPKFSPMKSPLPPPMPYDPPEEEEEEEEKKEEETEDDPE 138

Query: 141 KENPDEPEKQ 144
           KE+ D+P+ +
Sbjct: 139 KEDEDQPDNR 148

The following BLAST results are available for this feature:

BLAST of Carg09859 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023577.1	3.4e-68	100.00	hypothetical protein SDJN02_14603 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589907.1	2.9e-67	99.30	hypothetical protein SDJN03_15330, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960823.1	1.9e-66	97.90	uncharacterized protein LOC111461515 isoform X1 [Cucurbita moschata]	[more]
XP_023516602.1	9.2e-66	96.50	uncharacterized protein LOC111780429 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022987895.1	1.5e-63	95.10	uncharacterized protein LOC111485300 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg09859 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HA36	9.0e-67	97.90	uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JI28	7.1e-64	95.10	uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3BLF1	4.2e-56	86.71	Coiled-coil domain-containing protein 9-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1F0T5	9.3e-56	87.41	uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]
A0A6J1HQ01	2.7e-55	86.71	uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629...	[more]

BLAST of Carg09859 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17240.1	4.9e-33	64.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G24506.1	4.0e-27	60.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..143
None	No IPR available	PANTHER	PTHR35713:SF4	SUBFAMILY NOT NAMED	coord: 11..141
None	No IPR available	PANTHER	PTHR35713	ARGININE/SERINE-RICH-LIKE SPLICING FACTOR	coord: 11..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09859-RA	Carg09859-RA	mRNA