Carg09836 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09836
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr10: 2970825 .. 2971633 (-)
RNA-Seq Expression	Carg09836
Synteny	Carg09836

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGAAGAATTGAAACGGGCTTGAAGAGTGGGTTGAAATTCAATACACGAATGACCCAATATTGCAATCCAGACCGCCATGAACAGACCTTGAGAAGTGAAGATGGTCCATCAACGCAGCATTCATGTAGGAGCCAGAGAACAATCGCTACCAGATAAGGATTTAAAGCAGCACCGTTCATTACCCTCACCATTATATTCATGGAATAGCTTCTTATCACACACTTCTCTCGCTATTTTCCTTTTGTTTCTCCCCATTTCCAACATTCCAAACCCGCAAATTTTGTTTTCTATTACTCTTTCTCAGGTACTCAATTCTGTACTCTGCTCAAATGCCTCACTGCTTTTCTCTGCCTTCCTTGATTTCTCATTCCTACAAATTATCACTTAAATTTGTATGCGTATTCCTGTTCTTTCTGTTTTTGAGTTCGTCTTAGGAAATTGAGTTCTAATGCTTATGGAAGTTTCTGTTGGGAATGTCCACTTCTTTGGTATTTATCTGCTACGAATTATTTCCAATTCTCAACTCTAATTACTCCTGTTGCTCAATCACAAGGATAATTATGTTAGCCTAACTTTGGCGAGCTTTAATCATTCTTAATTTTAACCTCTGCCAAGCCATTCTCTTATTAAATGAATTCTTGATTTAGCTTAGATGTTGAGTATTTATGTGTGTTAATATGCCTCTCTGAAATTTGATCGTGGAGAATTGTTGTGTGTAAATTGTGATGCTGTCAATGATGTTTGCAGGGGAAAACAAGGATGAAGAACTAACAACGGGAAGGGGCCCTTCTCCCTACACTTGA

mRNA sequence

ATGAAGAGAAGAATTGAAACGGGCTTGAAGAGTGGGTTGAAATTCAATACACGAATGACCCAATATTGCAATCCAGACCGCCATGAACAGACCTTGAGAAGTGAAGATGGTCCATCAACGCAGCATTCATGGGAAAACAAGGATGAAGAACTAACAACGGGAAGGGGCCCTTCTCCCTACACTTGA

Coding sequence (CDS)

ATGAAGAGAAGAATTGAAACGGGCTTGAAGAGTGGGTTGAAATTCAATACACGAATGACCCAATATTGCAATCCAGACCGCCATGAACAGACCTTGAGAAGTGAAGATGGTCCATCAACGCAGCATTCATGGGAAAACAAGGATGAAGAACTAACAACGGGAAGGGGCCCTTCTCCCTACACTTGA

Protein sequence

MKRRIETGLKSGLKFNTRMTQYCNPDRHEQTLRSEDGPSTQHSWENKDEELTTGRGPSPYT

Homology

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BLAST of Carg09836 vs. NCBI nr
Match: KAG7023600.1 (hypothetical protein SDJN02_14626, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 8.0e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MKRRIETGLKSGLKFNTRMTQYCNPDRHEQTLRSEDGPSTQHSWENKDEELTTGRGPSPY 60
          MKRRIETGLKSGLKFNTRMTQYCNPDRHEQTLRSEDGPSTQHSWENKDEELTTGRGPSPY
Sbjct: 1  MKRRIETGLKSGLKFNTRMTQYCNPDRHEQTLRSEDGPSTQHSWENKDEELTTGRGPSPY 60

Query: 61 T 62
          T
Sbjct: 61 T 61

The following BLAST results are available for this feature:

BLAST of Carg09836 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023600.1	8.0e-27	100.00	hypothetical protein SDJN02_14626, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg09836 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09836 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09836 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09836-RA	Carg09836-RA	mRNA