Carg09774 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09774
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC110426669
Location	Carg_Chr14: 2998744 .. 2999482 (-)
RNA-Seq Expression	Carg09774
Synteny	Carg09774

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAAGAACAAGTTGATGGGTGAGAGAGCAGCGAAAATGGAGAACTTGACAAAACCAGCAGAGGGAATTAAAAGTGGAAGGCCTGAAGAAGACGAACAACTTCATTTCATTCTTTTGTGTTTATAACAATTTATTTGTAGCTGTTATTTGTATTCCCTTTTCTTTGGTTATAAATGAAAAAAAATCCATTTCTTTTATAAATATTGAGAATTGTTGCAAATATTTATTTCTAGCGGCAAATTGTTGCAAATTCCATTGTCCTTCCAATGGGTTCTCGTCGGAATCGGTAACAGAACCCTAAACATGCCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCGCCTCGGCTCCGATCCTGTTGGTTATGGACCGGCGTTGTCTGGTCATGGGGTTCGTCCTTTGGCAACGTTGCACGGCCGGCCGAAGTCCCAGAAGGCGCTGCTTGTTGATTCGATTTTACAGAGTATGTGGGGAGTGTCACCTACACACTTAGCTTGGAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAGACAAAGTGCTGTCTGCAATGTCGCATTTCGACTTCGAGATGGCTTTGTATTATGTAAGATCTTCAGATCATGACTTTCAAGAACAAAAGAAAGCAATTTTGATGCTAATTAATGGATTGCAGAGTTTAATTGAAGCATTAGGATGTTGA

mRNA sequence

ATGAAGAACAAGAACAAGTTGATGGGTGAGAGAGCAGCGAAAATGGAGAACTTGACAAAACCAGCAGAGGGAATTAAAAGTGGAAGGCCTGAAGAAGACGAACAACTTCATTTCATTCTTTTCGGCAAATTGTTGCAAATTCCATTGTCCTTCCAATGGGTTCTCGTCGGAATCGGTAACAGAACCCTAAACATGCCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCGCCTCGGCTCCGATCCTGTTGGTTATGGACCGGCGTTGTCTGGTCATGGGGTTCGTCCTTTGGCAACGTTGCACGGCCGGCCGAAAGTATGTGGGGAGTGTCACCTACACACTTAGCTTGGAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAGACAAAGTGCTGTCTGCAATGTCGCATTTCGACTTCGAGATGGCTTTGTATTATGTAAGATCTTCAGATCATGACTTTCAAGAACAAAAGAAAGCAATTTTGATGCTAATTAATGGATTGCAGAGTTTAATTGAAGCATTAGGATGTTGA

Coding sequence (CDS)

ATGAAGAACAAGAACAAGTTGATGGGTGAGAGAGCAGCGAAAATGGAGAACTTGACAAAACCAGCAGAGGGAATTAAAAGTGGAAGGCCTGAAGAAGACGAACAACTTCATTTCATTCTTTTCGGCAAATTGTTGCAAATTCCATTGTCCTTCCAATGGGTTCTCGTCGGAATCGGTAACAGAACCCTAAACATGCCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCGCCTCGGCTCCGATCCTGTTGGTTATGGACCGGCGTTGTCTGGTCATGGGGTTCGTCCTTTGGCAACGTTGCACGGCCGGCCGAAAGTATGTGGGGAGTGTCACCTACACACTTAGCTTGGAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAGACAAAGTGCTGTCTGCAATGTCGCATTTCGACTTCGAGATGGCTTTGTATTATGTAAGATCTTCAGATCATGACTTTCAAGAACAAAAGAAAGCAATTTTGATGCTAATTAATGGATTGCAGAGTTTAATTGAAGCATTAGGATGTTGA

Protein sequence

MKNKNKLMGERAAKMENLTKPAEGIKSGRPEEDEQLHFILFGKLLQIPLSFQWVLVGIGNRTLNMPTTTSSALAAGAILFLFIIVSAASAPILLVMDRRCLVMGFVLWQRCTAGRKYVGSVTYTLSLELDVLNSVAAHGGDRNKLDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC

Homology

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BLAST of Carg09774 vs. NCBI nr
Match: KAG7017717.1 (hypothetical protein SDJN02_19583, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.6 bits (963), Expect = 2.7e-100
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKNKNKLMGERAAKMENLTKPAEGIKSGRPEEDEQLHFILFGKLLQIPLSFQWVLVGIGN 60
           MKNKNKLMGERAAKMENLTKPAEGIKSGRPEEDEQLHFILFGKLLQIPLSFQWVLVGIGN
Sbjct: 1   MKNKNKLMGERAAKMENLTKPAEGIKSGRPEEDEQLHFILFGKLLQIPLSFQWVLVGIGN 60

Query: 61  RTLNMPTTTSSALAAGAILFLFIIVSAASAPILLVMDRRCLVMGFVLWQRCTAGRKYVGS 120
           RTLNMPTTTSSALAAGAILFLFIIVSAASAPILLVMDRRCLVMGFVLWQRCTAGRKYVGS
Sbjct: 61  RTLNMPTTTSSALAAGAILFLFIIVSAASAPILLVMDRRCLVMGFVLWQRCTAGRKYVGS 120

Query: 121 VTYTLSLELDVLNSVAAHGGDRNKLDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILM 180
           VTYTLSLELDVLNSVAAHGGDRNKLDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILM
Sbjct: 121 VTYTLSLELDVLNSVAAHGGDRNKLDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILM 180

Query: 181 LINGLQSLIEALGC 195
           LINGLQSLIEALGC
Sbjct: 181 LINGLQSLIEALGC 194

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BLAST of Carg09774 vs. NCBI nr
Match: KAG6580978.1 (putative pectate lyase P59, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-48
Identity = 121/170 (71.18%), Postives = 128/170 (75.29%), Query Frame = 0


Query: 25  IKSGRPEEDEQLHFILFGKLLQIPLSFQWVLVGIGNRTLNMPTTTSSALAAGAILFLFII 84
           ++SG P +         GKLLQIPLSFQWVLVGIGN TLNMPTTTSSALAAGAILFLFII
Sbjct: 398 VESGDPSKQRPYS---SGKLLQIPLSFQWVLVGIGNGTLNMPTTTSSALAAGAILFLFII 457

Query: 85  VSAASAPILLVMDRRCLVMGFVLWQRCTAGRKYVGSVTYTLSLELDVLNSVAAHGGDRNK 144
           VSAASAPILLVMDRRCL M  V     +       S+  TL L + V+          NK
Sbjct: 458 VSAASAPILLVMDRRCLSMWGV-----SPTHLAWSSMFLTLWLHMVVI---------ENK 517

Query: 145 LDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           LDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC
Sbjct: 518 LDKVLSAMSHFDFEMALYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 550

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: XP_038904794.1 (uncharacterized protein LOC120091059 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 50/103 (48.54%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 113 AGRKYVGSVTYTLSL--ELDVLNSVAAHGGDRN-------------------KLDKVLSA 172
           AGR+ +   T   S+   +DVLNSVAAHGGDRN                   KLDKV+SA
Sbjct: 534 AGRRNLILTTLNSSITSAIDVLNSVAAHGGDRNLLKPKQRTEFIQRWNLFKYKLDKVVSA 593

Query: 173 MSHFDFEMALYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           MSHFDFEMALYYVRSSDHD         ++ N  Q L  +L C
Sbjct: 594 MSHFDFEMALYYVRSSDHDLYTLHS---IVYNASQELEASLVC 633

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: XP_023531074.1 (uncharacterized protein LOC111793435 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 179
           S+  +++  +DVLNSVAAHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 538 SLNNSITSAIDVLNSVAAHGGDRNLLKSKQRMEFIQRWNLFKYKLDKVVSAMSHFDFEMA 597

Query: 180 LYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           LYY+RSSDHD         ++ N  Q L  +L C
Sbjct: 598 LYYIRSSDHDLYTLHS---IVYNASQELEASLVC 628

[Close]

BLAST of Carg09774 vs. NCBI nr
Match: KAG6588383.1 (F-box/WD repeat-containing protein sel-10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 120  SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 179
            S+  +++  +DVLNSVAAHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 981  SLNNSITSAIDVLNSVAAHGGDRNLLKSKQRTEFIQRWNLFKYKLDKVVSAMSHFDFEMA 1040

Query: 180  LYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
            LYY+RSSDHD         ++ N  Q L  +L C
Sbjct: 1041 LYYIRSSDHDLYTLHS---IVYNASQELEASLVC 1071

[Close]

BLAST of Carg09774 vs. ExPASy TrEMBL
Match: A0A6J1I4D6 (uncharacterized protein LOC111469537 OS=Cucurbita maxima OX=3661 GN=LOC111469537 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 179
           S+  +++  +DVLNSV+AHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 542 SLNNSITSAIDVLNSVSAHGGDRNLLKSKQRTEFIQRWNLFKYKLDKVVSAMSHFDFEMA 601

Query: 180 LYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           LYY+RSSDHD         ++ N  Q L  +L C
Sbjct: 602 LYYIRSSDHDLYTLHS---IVYNASQELEASLIC 632

[Close]

BLAST of Carg09774 vs. ExPASy TrEMBL
Match: A0A6J1EKD6 (uncharacterized protein LOC111435452 OS=Cucurbita moschata OX=3662 GN=LOC111435452 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 179
           S+  +++  +DVLNSVAAHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 545 SLNNSITSAIDVLNSVAAHGGDRNLLKSKQRTEFIQRWNLFKYKLDKVVSAMSHFDFEMA 604

Query: 180 LYYVRSSDHDFQEQKKAILMLINGLQSLIEALGC 195
           L+Y+RSSDHD         ++ N  Q L  +L C
Sbjct: 605 LHYIRSSDHDLYTLHS---IVYNASQELEASLVC 635

[Close]

BLAST of Carg09774 vs. ExPASy TrEMBL
Match: A0A6J1DD54 (uncharacterized protein LOC111019949 OS=Momordica charantia OX=3673 GN=LOC111019949 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.7e-10
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKVLSAMSHFDFEMA 171
           ++ ++++  +DVL+SVAAHGGDRN                   KLDKV+SAMSHFDFEMA
Sbjct: 541 ALNHSITSVIDVLDSVAAHGGDRNLLKPKQRTEFIQRWNLFKYKLDKVVSAMSHFDFEMA 600

[Close]

BLAST of Carg09774 vs. ExPASy TrEMBL
Match: A0A1R3I9C6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13835 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 109 QRCTAGRKY-VGSVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKV 168
           Q+  A R + + S+ Y+++  +DVL SV AHGGDRN                   KLDKV
Sbjct: 537 QKDAARRNFLLTSLNYSITSAIDVLESVDAHGGDRNLLKQNQHVEFVQRWHLFKYKLDKV 596

Query: 169 LSAMSHFDFEMALYYVRSSDHD 171
           +SA+SHFDFEMALYY++SSDHD
Sbjct: 597 VSALSHFDFEMALYYLKSSDHD 618

[Close]

BLAST of Carg09774 vs. ExPASy TrEMBL
Match: A0A067LM44 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09728 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 109 QRCTAGRKYV-GSVTYTLSLELDVLNSVAAHGGDRN-------------------KLDKV 168
           QR  A R  +  S+ Y+++  +DVL S+  HGGDRN                   KLDK 
Sbjct: 537 QRDAARRNVILTSMNYSITSAIDVLESIVGHGGDRNLLKQNQHAEFIQRWNLFKYKLDKA 596

Query: 169 LSAMSHFDFEMALYYVRSSDHD 171
           +SAMSHFDFEMALYY+RSSDHD
Sbjct: 597 VSAMSHFDFEMALYYLRSSDHD 618

[Close]

BLAST of Carg09774 vs. TAIR 10
Match: AT3G28720.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-07
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 120 SVTYTLSLELDVLNSVAAHGGD-------------------RNKLDKVLSAMSHFDFEMA 171
           S+  T++  +DV++S  A+GGD                   + KLDK +SA+SH +FEMA
Sbjct: 558 SLNTTITSAIDVIDSAVAYGGDVILRKQNRHSEFMQRWNLMQYKLDKTVSALSHNEFEMA 617

The following BLAST results are available for this feature:

BLAST of Carg09774 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017717.1	2.7e-100	100.00	hypothetical protein SDJN02_19583, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580978.1	4.0e-48	71.18	putative pectate lyase P59, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038904794.1	1.1e-10	48.54	uncharacterized protein LOC120091059 [Benincasa hispida]	[more]
XP_023531074.1	2.0e-10	47.87	uncharacterized protein LOC111793435 [Cucurbita pepo subsp. pepo]	[more]
KAG6588383.1	2.0e-10	47.87	F-box/WD repeat-containing protein sel-10, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Carg09774 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09774 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I4D6	2.8e-10	46.81	uncharacterized protein LOC111469537 OS=Cucurbita maxima OX=3661 GN=LOC111469537...	[more]
A0A6J1EKD6	3.6e-10	46.81	uncharacterized protein LOC111435452 OS=Cucurbita moschata OX=3662 GN=LOC1114354...	[more]
A0A6J1DD54	4.7e-10	55.71	uncharacterized protein LOC111019949 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1R3I9C6	1.4e-09	48.78	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13835 PE=4 ...	[more]
A0A067LM44	1.4e-09	48.78	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09728 PE=4 SV=1	[more]

BLAST of Carg09774 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28720.1	8.2e-07	38.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09774-RA	Carg09774-RA	mRNA