Carg09592 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09592
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr17: 6997949 .. 6999164 (+)
RNA-Seq Expression	Carg09592
Synteny	Carg09592

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCAATCAGTGTAAAGCCTGATGAGTTCACTATGGTCAGTATTCTTACTGCTTGTGCACAGCTAGGGGCCCTGGAATTAGGAGAATGGATAAAGACTTATATCGATCGGAACAAGATCAATAATGATGCATTTTTTAGAAATGCTTTAATAGACATGTACTTCAAGTGTGGAAATGTTGACAAAGCAGAAAGAGTATTCAGAGAGATGCACCAGAGAGACAAGTTTACCTGGACAGCCATGATAGTTGGCCTTGCAGTTAATGGCCACGGTGAGAAAGCTCTTGATATGTTTTCTAAAATGCTAGAAGCTTCAATTTTGCCAGATGATGTTACTTACATTGGAGTTCTTGCTGCCTGTACTCACACCGGCATGGTCGATAAAGGACGAGAGTTTTTCCTTAGCATGACAACCCAACATGGTATTGAACCCAATATAACACACTACGGTTGTCTGGTTGATCTTCTTGCTAGAGCTGGTCATCTAAAAGAAGCCCATGAAGTTATCAAGAACATGCCAATAGAACCCAATTCAATTGTCTGGGGGGCTCTTCTAGCTGGTTGTAGAGCTCATAGAGAAGCCGATATGGCCGAAATGGTTGCAAAGCAGATTCTCGAGTTGGAGCCTGAGAACGGTGCAGTCTATGTTCTCCTGTGTAATATATATGCAGCTTGCAAGAGATGGAATGACCTGCGAGACCTGAGACAGATGATGATGGACAAAGGAATCAAGAAAATACCTGGTTGCAGTTTGATAGAGATGAACGGCACAGTTCACGAATTCGTAGCTGGGGACCGGTCACACCCTCAAACCAAAGAAATTGATGTTAAGCTAGAAAAAATGACCCAAGACCTGAAATTTGCAGGGTATTCACCTGATACCTCAGAAGTGTTCCTTGATATAGCAGAAGAGGATAAAGAGAATTCAGTCTTTCGTCACAGTGAGAAGCTGGCCATTGCTTTTGGACTCATTAATTCACCGCCTGGGGTCACAATTAGAATTGTGAAGAACCTTAGAATGTGCCTGGACTGTCACAGTCTAGCAAAGTTGATCTCAAAGGTGTATCATAGGGAAGTAATTGTTAGGGACAGAACCAGATTCCACCATTTCAAACATGGTTTATGTTCGTGTAAAGATTACTGGTGATGGCGTTGAATTCTTGAATCGACAACCTCCGCCCTCCCTCTCTAGTCTATTTCTAGCTGTTTACTGA

mRNA sequence

ATGCAAGCAATCAGTGTAAAGCCTGATGAGTTCACTATGGTCAGTATTCTTACTGCTTGTGCACAGCTAGGGGCCCTGGAATTAGGAGAATGGATAAAGACTTATATCGATCGGAACAAGATCAATAATGATGCATTTTTTAGAAATGCTTTAATAGACATGTACTTCAAGTGTGGAAATGTTGACAAAGCAGAAAGAGTATTCAGAGAGATGCACCAGAGAGACAAGTTTACCTGGACAGCCATGATAGTTGGCCTTGCAGTTAATGGCCACGGTGAGAAAGCTCTTGATATGTTTTCTAAAATGCTAGAAGCTTCAATTTTGCCAGATGATGTTACTTACATTGGAGTTCTTGCTGCCTGTACTCACACCGGCATGGTCGATAAAGGACGAGAGTTTTTCCTTAGCATGACAACCCAACATGGTATTGAACCCAATATAACACACTACGGTTGTCTGGTTGATCTTCTTGCTAGAGCTGGTCATCTAAAAGAAGCCCATGAAGTTATCAAGAACATGCCAATAGAACCCAATTCAATTGTCTGGGGGGCTCTTCTAGCTGGTTGTAGAGCTCATAGAGAAGCCGATATGGCCGAAATGGTTGCAAAGCAGATTCTCGAGTTGGAGCCTGAGAACGGTGCAGTCTATGTTCTCCTGTGTAATATATATGCAGCTTGCAAGAGATGGAATGACCTGCGAGACCTGAGACAGATGATGATGGACAAAGGAATCAAGAAAATACCTGGTTGCAGTTTGATAGAGATGAACGGCACAGTTCACGAATTCGTAGCTGGGGACCGGTCACACCCTCAAACCAAAGAAATTGATGTTAAGCTAGAAAAAATGACCCAAGACCTGAAATTTGCAGGGTATTCACCTGATACCTCAGAAGTGTTCCTTGATATAGCAGAAGAGGATAAAGAGAATTCAGTCTTTCGTCACAGTGAGAAGCTGGCCATTGCTTTTGGACTCATTAATTCACCGCCTGGGGTCACAATTAGAATTGTGAAGAACCTTAGAATGTGCCTGGACTGTCACAGTCTAGCAAAGTTGATCTCAAAGATTACTGGTGATGGCGTTGAATTCTTGAATCGACAACCTCCGCCCTCCCTCTCTAGTCTATTTCTAGCTGTTTACTGA

Coding sequence (CDS)

ATGCAAGCAATCAGTGTAAAGCCTGATGAGTTCACTATGGTCAGTATTCTTACTGCTTGTGCACAGCTAGGGGCCCTGGAATTAGGAGAATGGATAAAGACTTATATCGATCGGAACAAGATCAATAATGATGCATTTTTTAGAAATGCTTTAATAGACATGTACTTCAAGTGTGGAAATGTTGACAAAGCAGAAAGAGTATTCAGAGAGATGCACCAGAGAGACAAGTTTACCTGGACAGCCATGATAGTTGGCCTTGCAGTTAATGGCCACGGTGAGAAAGCTCTTGATATGTTTTCTAAAATGCTAGAAGCTTCAATTTTGCCAGATGATGTTACTTACATTGGAGTTCTTGCTGCCTGTACTCACACCGGCATGGTCGATAAAGGACGAGAGTTTTTCCTTAGCATGACAACCCAACATGGTATTGAACCCAATATAACACACTACGGTTGTCTGGTTGATCTTCTTGCTAGAGCTGGTCATCTAAAAGAAGCCCATGAAGTTATCAAGAACATGCCAATAGAACCCAATTCAATTGTCTGGGGGGCTCTTCTAGCTGGTTGTAGAGCTCATAGAGAAGCCGATATGGCCGAAATGGTTGCAAAGCAGATTCTCGAGTTGGAGCCTGAGAACGGTGCAGTCTATGTTCTCCTGTGTAATATATATGCAGCTTGCAAGAGATGGAATGACCTGCGAGACCTGAGACAGATGATGATGGACAAAGGAATCAAGAAAATACCTGGTTGCAGTTTGATAGAGATGAACGGCACAGTTCACGAATTCGTAGCTGGGGACCGGTCACACCCTCAAACCAAAGAAATTGATGTTAAGCTAGAAAAAATGACCCAAGACCTGAAATTTGCAGGGTATTCACCTGATACCTCAGAAGTGTTCCTTGATATAGCAGAAGAGGATAAAGAGAATTCAGTCTTTCGTCACAGTGAGAAGCTGGCCATTGCTTTTGGACTCATTAATTCACCGCCTGGGGTCACAATTAGAATTGTGAAGAACCTTAGAATGTGCCTGGACTGTCACAGTCTAGCAAAGTTGATCTCAAAGATTACTGGTGATGGCGTTGAATTCTTGAATCGACAACCTCCGCCCTCCCTCTCTAGTCTATTTCTAGCTGTTTACTGA

Protein sequence

MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGNVDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAACTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSIVWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMMDKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKITGDGVEFLNRQPPPSLSSLFLAVY

Homology

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BLAST of Carg09592 vs. NCBI nr
Match: KAG7014145.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 779.6 bits (2012), Expect = 1.2e-221
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN
Sbjct: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA
Sbjct: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI
Sbjct: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM
Sbjct: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL
Sbjct: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKITGDGV 360
           DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKITGDGV
Sbjct: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKITGDGV 360

Query: 361 EFLNRQPPPSLSSLFLAVY 380
           EFLNRQPPPSLSSLFLAVY
Sbjct: 361 EFLNRQPPPSLSSLFLAVY 379

[Close]

BLAST of Carg09592 vs. NCBI nr
Match: KAG6575603.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 729.9 bits (1883), Expect = 1.1e-206
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN
Sbjct: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA
Sbjct: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI
Sbjct: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM
Sbjct: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL
Sbjct: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISK+
Sbjct: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKV 355

[Close]

BLAST of Carg09592 vs. NCBI nr
Match: XP_022953924.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930 [Cucurbita moschata])

HSP 1 Score: 729.9 bits (1883), Expect = 1.1e-206
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN
Sbjct: 340 MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 399

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA
Sbjct: 400 VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 459

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI
Sbjct: 460 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 519

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM
Sbjct: 520 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 579

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL
Sbjct: 580 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 639

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISK+
Sbjct: 640 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKV 694

[Close]

BLAST of Carg09592 vs. NCBI nr
Match: XP_022991386.1 (putative pentatricopeptide repeat-containing protein At3g15930 [Cucurbita maxima])

HSP 1 Score: 706.8 bits (1823), Expect = 9.9e-200
Identity = 341/355 (96.06%), Postives = 349/355 (98.31%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQA SVKPDEFTMVSILTACAQLGALELGEWIKTYID+NKINNDAF RNALIDMYFKCGN
Sbjct: 347 MQATSVKPDEFTMVSILTACAQLGALELGEWIKTYIDKNKINNDAFVRNALIDMYFKCGN 406

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAERVFREMHQRDKFTWT +IVGLAVNGHGEKALD+FSKMLEASILPDDVTYIGVL+A
Sbjct: 407 VDKAERVFREMHQRDKFTWTTIIVGLAVNGHGEKALDIFSKMLEASILPDDVTYIGVLSA 466

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAG LKEAHEVIKNMPIEPNSI
Sbjct: 467 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGRLKEAHEVIKNMPIEPNSI 526

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCR HREA+MAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM
Sbjct: 527 VWGALLAGCRVHREANMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 586

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPD S+VFL
Sbjct: 587 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDISKVFL 646

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHS+AKLISK+
Sbjct: 647 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSVAKLISKV 701

[Close]

BLAST of Carg09592 vs. NCBI nr
Match: XP_023549192.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 703.7 bits (1815), Expect = 8.4e-199
Identity = 340/355 (95.77%), Postives = 348/355 (98.03%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQA SVK DEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAF RNALIDMYFKCGN
Sbjct: 351 MQATSVKSDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFVRNALIDMYFKCGN 410

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAERVFR+MHQRDKFTWTA+IVGLAVNGHGEKALD+FSKMLEASILPDDVTYIGVL+A
Sbjct: 411 VDKAERVFRKMHQRDKFTWTAVIVGLAVNGHGEKALDVFSKMLEASILPDDVTYIGVLSA 470

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVDKGREFFLSMTTQHGIEPNI HYGCLVDLLARAG LKEAHEVIKNMPIEPNSI
Sbjct: 471 CTHTGMVDKGREFFLSMTTQHGIEPNIAHYGCLVDLLARAGRLKEAHEVIKNMPIEPNSI 530

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCR HREADMAEMVAKQIL+LE ENGAVYVLLCNIYAACKRWNDLRDLRQMMM
Sbjct: 531 VWGALLAGCRVHREADMAEMVAKQILKLESENGAVYVLLCNIYAACKRWNDLRDLRQMMM 590

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKKIPGCSLIEMNGTVHEF+AGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL
Sbjct: 591 DKGIKKIPGCSLIEMNGTVHEFIAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 650

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHS+AKLISK+
Sbjct: 651 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSVAKLISKV 705

[Close]

BLAST of Carg09592 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 421.0 bits (1081), Expect = 1.4e-116
Identity = 189/304 (62.17%), Postives = 243/304 (79.93%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQ+  + PDEFTMVS+LTACA LG+LE+GEWIKTYID+NKI ND    NALIDMYFKCG 
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGC 418

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
            +KA++VF +M QRDKFTWTAM+VGLA NG G++A+ +F +M + SI PDD+TY+GVL+A
Sbjct: 419 SEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           C H+GMVD+ R+FF  M + H IEP++ HYGC+VD+L RAG +KEA+E+++ MP+ PNSI
Sbjct: 479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI 538

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALL   R H +  MAE+ AK+ILELEP+NGAVY LLCNIYA CKRW DLR++R+ ++
Sbjct: 539 VWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIV 598

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           D  IKK PG SLIE+NG  HEFVAGD+SH Q++EI +KLE++ Q+  FA Y PDTSE+  
Sbjct: 599 DVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLF 658

Query: 301 DIAE 305
           +  +
Sbjct: 659 EAGD 662

[Close]

BLAST of Carg09592 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 375.9 bits (964), Expect = 5.2e-103
Identity = 169/356 (47.47%), Postives = 256/356 (71.91%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           M +  +KPD FT+VS+L+ACA++GAL LG+ +  Y+ +  +  +    N L+D+Y +CG 
Sbjct: 213 MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGR 272

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEA-SILPDDVTYIGVLA 120
           V++A+ +F EM  ++  +WT++IVGLAVNG G++A+++F  M     +LP ++T++G+L 
Sbjct: 273 VEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILY 332

Query: 121 ACTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNS 180
           AC+H GMV +G E+F  M  ++ IEP I H+GC+VDLLARAG +K+A+E IK+MP++PN 
Sbjct: 333 ACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNV 392

Query: 181 IVWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMM 240
           ++W  LL  C  H ++D+AE    QIL+LEP +   YVLL N+YA+ +RW+D++ +R+ M
Sbjct: 393 VIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQM 452

Query: 241 MDKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVF 300
           +  G+KK+PG SL+E+   VHEF+ GD+SHPQ+  I  KL++MT  L+  GY P  S V+
Sbjct: 453 LRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVY 512

Query: 301 LDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           +D+ EE+KEN+V  HSEK+AIAF LI++P    I +VKNLR+C DCH   KL+SK+
Sbjct: 513 VDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568

[Close]

BLAST of Carg09592 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 7.6e-102
Identity = 166/350 (47.43%), Postives = 244/350 (69.71%), Query Frame = 0


Query: 8   PDEFTMVSILTACAQLGALELGEWIKTYIDR--NKINNDAFFRNALIDMYFKCGNVDKAE 67
           P++ TM+SIL ACA LGA+++G WI  YID+    + N +  R +LIDMY KCG+++ A 
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424

Query: 68  RVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAACTHTG 127
           +VF  +  +   +W AMI G A++G  + + D+FS+M +  I PDD+T++G+L+AC+H+G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484

Query: 128 MVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSIVWGAL 187
           M+D GR  F +MT  + + P + HYGC++DLL  +G  KEA E+I  M +EP+ ++W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544

Query: 188 LAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMMDKGIK 247
           L  C+ H   ++ E  A+ ++++EPEN   YVLL NIYA+  RWN++   R ++ DKG+K
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604

Query: 248 KIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFLDIAEE 307
           K+PGCS IE++  VHEF+ GD+ HP+ +EI   LE+M   L+ AG+ PDTSEV  ++ EE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664

Query: 308 DKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
            KE ++  HSEKLAIAFGLI++ PG  + IVKNLR+C +CH   KLISKI
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKI 714

[Close]

BLAST of Carg09592 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.4e-100
Identity = 169/355 (47.61%), Postives = 243/355 (68.45%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           M+   ++P+  T+VS+L A ++LG+LELGEW+  Y + + I  D    +ALIDMY KCG 
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           ++KA  VF  + + +  TW+AMI G A++G    A+D F KM +A + P DV YI +L A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           C+H G+V++GR +F  M +  G+EP I HYGC+VDLL R+G L EA E I NMPI+P+ +
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           +W ALL  CR     +M + VA  ++++ P +   YV L N+YA+   W+++ ++R  M 
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMK 504

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           +K I+K PGCSLI+++G +HEFV  D SHP+ KEI+  L +++  L+ AGY P T++V L
Sbjct: 505 EKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLL 564

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           ++ EEDKEN +  HSEK+A AFGLI++ PG  IRIVKNLR+C DCHS  KLISK+
Sbjct: 565 NLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKV 619

[Close]

BLAST of Carg09592 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.3e-98
Identity = 168/352 (47.73%), Postives = 248/352 (70.45%), Query Frame = 0


Query: 5   SVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGNVDKA 64
           ++K ++ T+VS L+ACAQ+GALELG WI +YI ++ I  +    +ALI MY KCG+++K+
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419

Query: 65  ERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAACTHT 124
             VF  + +RD F W+AMI GLA++G G +A+DMF KM EA++ P+ VT+  V  AC+HT
Sbjct: 420 REVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479

Query: 125 GMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSIVWGA 184
           G+VD+    F  M + +GI P   HY C+VD+L R+G+L++A + I+ MPI P++ VWGA
Sbjct: 480 GLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGA 539

Query: 185 LLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMMDKGI 244
           LL  C+ H   ++AEM   ++LELEP N   +VLL NIYA   +W ++ +LR+ M   G+
Sbjct: 540 LLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGL 599

Query: 245 KKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFLDIAE 304
           KK PGCS IE++G +HEF++GD +HP ++++  KL ++ + LK  GY P+ S+V   I E
Sbjct: 600 KKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEE 659

Query: 305 ED-KENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           E+ KE S+  HSEKLAI +GLI++     IR++KNLR+C DCHS+AKLIS++
Sbjct: 660 EEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQL 711

[Close]

BLAST of Carg09592 vs. ExPASy TrEMBL
Match: A0A6J1GRB6 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930 OS=Cucurbita moschata OX=3662 GN=LOC111456329 PE=3 SV=1)

HSP 1 Score: 729.9 bits (1883), Expect = 5.3e-207
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN
Sbjct: 340 MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 399

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA
Sbjct: 400 VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 459

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI
Sbjct: 460 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 519

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM
Sbjct: 520 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 579

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL
Sbjct: 580 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 639

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISK+
Sbjct: 640 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKV 694

[Close]

BLAST of Carg09592 vs. ExPASy TrEMBL
Match: A0A6J1JQK8 (putative pentatricopeptide repeat-containing protein At3g15930 OS=Cucurbita maxima OX=3661 GN=LOC111488039 PE=3 SV=1)

HSP 1 Score: 706.8 bits (1823), Expect = 4.8e-200
Identity = 341/355 (96.06%), Postives = 349/355 (98.31%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQA SVKPDEFTMVSILTACAQLGALELGEWIKTYID+NKINNDAF RNALIDMYFKCGN
Sbjct: 347 MQATSVKPDEFTMVSILTACAQLGALELGEWIKTYIDKNKINNDAFVRNALIDMYFKCGN 406

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAERVFREMHQRDKFTWT +IVGLAVNGHGEKALD+FSKMLEASILPDDVTYIGVL+A
Sbjct: 407 VDKAERVFREMHQRDKFTWTTIIVGLAVNGHGEKALDIFSKMLEASILPDDVTYIGVLSA 466

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAG LKEAHEVIKNMPIEPNSI
Sbjct: 467 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGRLKEAHEVIKNMPIEPNSI 526

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCR HREA+MAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM
Sbjct: 527 VWGALLAGCRVHREANMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 586

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPD S+VFL
Sbjct: 587 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDISKVFL 646

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHS+AKLISK+
Sbjct: 647 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSVAKLISKV 701

[Close]

BLAST of Carg09592 vs. ExPASy TrEMBL
Match: A0A6J1CV36 (putative pentatricopeptide repeat-containing protein At3g15930 OS=Momordica charantia OX=3673 GN=LOC111014845 PE=3 SV=1)

HSP 1 Score: 656.0 bits (1691), Expect = 9.7e-185
Identity = 310/355 (87.32%), Postives = 334/355 (94.08%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQ  +V+PDEFTMVSIL ACA LGALELGEWIKTYIDRNKINNDAF RNALIDMYFKCGN
Sbjct: 364 MQVTNVQPDEFTMVSILNACAHLGALELGEWIKTYIDRNKINNDAFVRNALIDMYFKCGN 423

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKA+RVF+EM+QRDKFTWTAMIVGLAVNGHGEKALDMFSKML+ASI PD+VTYIGVL+A
Sbjct: 424 VDKAQRVFKEMNQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLKASIWPDEVTYIGVLSA 483

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTGMVD+GREFF SMTTQH IEPNI HYGCLVDLLARAG LKEAH+V++NMP++PNSI
Sbjct: 484 CTHTGMVDEGREFFRSMTTQHNIEPNIAHYGCLVDLLARAGRLKEAHQVVENMPMKPNSI 543

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCR H+EADMAEM A QIL+LEPENGA YVLLCNIYAACKRWNDLR+LRQ MM
Sbjct: 544 VWGALLAGCRVHKEADMAEMAANQILQLEPENGAAYVLLCNIYAACKRWNDLRELRQTMM 603

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKK PGCSLIEMNGTVHEFVAGDRSHPQTKEI VKLEKMTQDLK AGYSPD SEVFL
Sbjct: 604 DKGIKKTPGCSLIEMNGTVHEFVAGDRSHPQTKEIYVKLEKMTQDLKLAGYSPDISEVFL 663

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           DIAEEDKEN+VFRHSEKLAIAFGL+NS PG TIRIVKNLRMC+DCHS+AKL+S++
Sbjct: 664 DIAEEDKENAVFRHSEKLAIAFGLVNSQPGFTIRIVKNLRMCMDCHSMAKLVSEV 718

[Close]

BLAST of Carg09592 vs. ExPASy TrEMBL
Match: A0A5A7UUL4 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001870 PE=3 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 3.7e-184
Identity = 307/355 (86.48%), Postives = 335/355 (94.37%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQA +VKPDEFTMVS+LTACA LGALELGEWI+TYI+RNKINND F RNALIDMYFKCG+
Sbjct: 363 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYINRNKINNDLFVRNALIDMYFKCGD 422

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAER+FREM QRDKFTWTAMIVGLAVNGHGEKALDMFS ML+ASILPD++TYIGVL+A
Sbjct: 423 VDKAERIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 482

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTG+VDKGR++FL MT+QHGIEPNI HYGCLVDLLARAG LKEA++VIKNMPI+ NSI
Sbjct: 483 CTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYDVIKNMPIKANSI 542

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCR +READMAEMV K ILELEP+NGAVYVLLCNIYAACKRWN+LR+LRQMMM
Sbjct: 543 VWGALLAGCRVYREADMAEMVVKHILELEPDNGAVYVLLCNIYAACKRWNELRELRQMMM 602

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKK PGCSLIEMNG VHEFVAGDRSHPQTK ID KL+KMTQDLK AGYSPD SEVFL
Sbjct: 603 DKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFL 662

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           D+AEEDKENSVFRHSEKLAIAFGLINSPPGVTIRI KNLRMC+DCH++AKL+SK+
Sbjct: 663 DVAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKV 717

[Close]

BLAST of Carg09592 vs. ExPASy TrEMBL
Match: A0A1S3CDK0 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930 OS=Cucumis melo OX=3656 GN=LOC103499814 PE=3 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 3.7e-184
Identity = 307/355 (86.48%), Postives = 335/355 (94.37%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQA +VKPDEFTMVS+LTACA LGALELGEWI+TYI+RNKINND F RNALIDMYFKCG+
Sbjct: 375 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYINRNKINNDLFVRNALIDMYFKCGD 434

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           VDKAER+FREM QRDKFTWTAMIVGLAVNGHGEKALDMFS ML+ASILPD++TYIGVL+A
Sbjct: 435 VDKAERIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 494

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           CTHTG+VDKGR++FL MT+QHGIEPNI HYGCLVDLLARAG LKEA++VIKNMPI+ NSI
Sbjct: 495 CTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYDVIKNMPIKANSI 554

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALLAGCR +READMAEMV K ILELEP+NGAVYVLLCNIYAACKRWN+LR+LRQMMM
Sbjct: 555 VWGALLAGCRVYREADMAEMVVKHILELEPDNGAVYVLLCNIYAACKRWNELRELRQMMM 614

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           DKGIKK PGCSLIEMNG VHEFVAGDRSHPQTK ID KL+KMTQDLK AGYSPD SEVFL
Sbjct: 615 DKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFL 674

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           D+AEEDKENSVFRHSEKLAIAFGLINSPPGVTIRI KNLRMC+DCH++AKL+SK+
Sbjct: 675 DVAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKV 729

[Close]

BLAST of Carg09592 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 421.0 bits (1081), Expect = 1.0e-117
Identity = 189/304 (62.17%), Postives = 243/304 (79.93%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           MQ+  + PDEFTMVS+LTACA LG+LE+GEWIKTYID+NKI ND    NALIDMYFKCG 
Sbjct: 359 MQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGC 418

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
            +KA++VF +M QRDKFTWTAM+VGLA NG G++A+ +F +M + SI PDD+TY+GVL+A
Sbjct: 419 SEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           C H+GMVD+ R+FF  M + H IEP++ HYGC+VD+L RAG +KEA+E+++ MP+ PNSI
Sbjct: 479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSI 538

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           VWGALL   R H +  MAE+ AK+ILELEP+NGAVY LLCNIYA CKRW DLR++R+ ++
Sbjct: 539 VWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIV 598

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           D  IKK PG SLIE+NG  HEFVAGD+SH Q++EI +KLE++ Q+  FA Y PDTSE+  
Sbjct: 599 DVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLF 658

Query: 301 DIAE 305
           +  +
Sbjct: 659 EAGD 662

[Close]

BLAST of Carg09592 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 375.9 bits (964), Expect = 3.7e-104
Identity = 169/356 (47.47%), Postives = 256/356 (71.91%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           M +  +KPD FT+VS+L+ACA++GAL LG+ +  Y+ +  +  +    N L+D+Y +CG 
Sbjct: 213 MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGR 272

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEA-SILPDDVTYIGVLA 120
           V++A+ +F EM  ++  +WT++IVGLAVNG G++A+++F  M     +LP ++T++G+L 
Sbjct: 273 VEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILY 332

Query: 121 ACTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNS 180
           AC+H GMV +G E+F  M  ++ IEP I H+GC+VDLLARAG +K+A+E IK+MP++PN 
Sbjct: 333 ACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNV 392

Query: 181 IVWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMM 240
           ++W  LL  C  H ++D+AE    QIL+LEP +   YVLL N+YA+ +RW+D++ +R+ M
Sbjct: 393 VIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQM 452

Query: 241 MDKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVF 300
           +  G+KK+PG SL+E+   VHEF+ GD+SHPQ+  I  KL++MT  L+  GY P  S V+
Sbjct: 453 LRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVY 512

Query: 301 LDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           +D+ EE+KEN+V  HSEK+AIAF LI++P    I +VKNLR+C DCH   KL+SK+
Sbjct: 513 VDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568

[Close]

BLAST of Carg09592 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 375.9 bits (964), Expect = 3.7e-104
Identity = 169/356 (47.47%), Postives = 256/356 (71.91%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           M +  +KPD FT+VS+L+ACA++GAL LG+ +  Y+ +  +  +    N L+D+Y +CG 
Sbjct: 80  MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGR 139

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEA-SILPDDVTYIGVLA 120
           V++A+ +F EM  ++  +WT++IVGLAVNG G++A+++F  M     +LP ++T++G+L 
Sbjct: 140 VEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILY 199

Query: 121 ACTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNS 180
           AC+H GMV +G E+F  M  ++ IEP I H+GC+VDLLARAG +K+A+E IK+MP++PN 
Sbjct: 200 ACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNV 259

Query: 181 IVWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMM 240
           ++W  LL  C  H ++D+AE    QIL+LEP +   YVLL N+YA+ +RW+D++ +R+ M
Sbjct: 260 VIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQM 319

Query: 241 MDKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVF 300
           +  G+KK+PG SL+E+   VHEF+ GD+SHPQ+  I  KL++MT  L+  GY P  S V+
Sbjct: 320 LRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVY 379

Query: 301 LDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           +D+ EE+KEN+V  HSEK+AIAF LI++P    I +VKNLR+C DCH   KL+SK+
Sbjct: 380 VDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 435

[Close]

BLAST of Carg09592 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 372.1 bits (954), Expect = 5.4e-103
Identity = 166/350 (47.43%), Postives = 244/350 (69.71%), Query Frame = 0


Query: 8   PDEFTMVSILTACAQLGALELGEWIKTYIDR--NKINNDAFFRNALIDMYFKCGNVDKAE 67
           P++ TM+SIL ACA LGA+++G WI  YID+    + N +  R +LIDMY KCG+++ A 
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424

Query: 68  RVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAACTHTG 127
           +VF  +  +   +W AMI G A++G  + + D+FS+M +  I PDD+T++G+L+AC+H+G
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484

Query: 128 MVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSIVWGAL 187
           M+D GR  F +MT  + + P + HYGC++DLL  +G  KEA E+I  M +EP+ ++W +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544

Query: 188 LAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMMDKGIK 247
           L  C+ H   ++ E  A+ ++++EPEN   YVLL NIYA+  RWN++   R ++ DKG+K
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604

Query: 248 KIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFLDIAEE 307
           K+PGCS IE++  VHEF+ GD+ HP+ +EI   LE+M   L+ AG+ PDTSEV  ++ EE
Sbjct: 605 KVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE 664

Query: 308 DKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
            KE ++  HSEKLAIAFGLI++ PG  + IVKNLR+C +CH   KLISKI
Sbjct: 665 WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKI 714

[Close]

BLAST of Carg09592 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 367.1 bits (941), Expect = 1.7e-101
Identity = 169/355 (47.61%), Postives = 243/355 (68.45%), Query Frame = 0


Query: 1   MQAISVKPDEFTMVSILTACAQLGALELGEWIKTYIDRNKINNDAFFRNALIDMYFKCGN 60
           M+   ++P+  T+VS+L A ++LG+LELGEW+  Y + + I  D    +ALIDMY KCG 
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324

Query: 61  VDKAERVFREMHQRDKFTWTAMIVGLAVNGHGEKALDMFSKMLEASILPDDVTYIGVLAA 120
           ++KA  VF  + + +  TW+AMI G A++G    A+D F KM +A + P DV YI +L A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384

Query: 121 CTHTGMVDKGREFFLSMTTQHGIEPNITHYGCLVDLLARAGHLKEAHEVIKNMPIEPNSI 180
           C+H G+V++GR +F  M +  G+EP I HYGC+VDLL R+G L EA E I NMPI+P+ +
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444

Query: 181 VWGALLAGCRAHREADMAEMVAKQILELEPENGAVYVLLCNIYAACKRWNDLRDLRQMMM 240
           +W ALL  CR     +M + VA  ++++ P +   YV L N+YA+   W+++ ++R  M 
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMK 504

Query: 241 DKGIKKIPGCSLIEMNGTVHEFVAGDRSHPQTKEIDVKLEKMTQDLKFAGYSPDTSEVFL 300
           +K I+K PGCSLI+++G +HEFV  D SHP+ KEI+  L +++  L+ AGY P T++V L
Sbjct: 505 EKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLL 564

Query: 301 DIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIVKNLRMCLDCHSLAKLISKI 356
           ++ EEDKEN +  HSEK+A AFGLI++ PG  IRIVKNLR+C DCHS  KLISK+
Sbjct: 565 NLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKV 619

The following BLAST results are available for this feature:

BLAST of Carg09592 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014145.1	1.2e-221	100.00	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG6575603.1	1.1e-206	99.72	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022953924.1	1.1e-206	99.72	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15...	[more]
XP_022991386.1	9.9e-200	96.06	putative pentatricopeptide repeat-containing protein At3g15930 [Cucurbita maxima...	[more]
XP_023549192.1	8.4e-199	95.77	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15...	[more]

BLAST of Carg09592 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSB8	1.4e-116	62.17	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]
A8MQA3	5.2e-103	47.47	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	7.6e-102	47.43	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9FI80	2.4e-100	47.61	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
O82380	1.3e-98	47.73	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]

BLAST of Carg09592 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRB6	5.3e-207	99.72	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15...	[more]
A0A6J1JQK8	4.8e-200	96.06	putative pentatricopeptide repeat-containing protein At3g15930 OS=Cucurbita maxi...	[more]
A0A6J1CV36	9.7e-185	87.32	putative pentatricopeptide repeat-containing protein At3g15930 OS=Momordica char...	[more]
A0A5A7UUL4	3.7e-184	86.48	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3CDK0	3.7e-184	86.48	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15...	[more]

BLAST of Carg09592 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15930.1	1.0e-117	62.17	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21065.1	3.7e-104	47.47	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.2	3.7e-104	47.47	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	5.4e-103	47.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48910.1	1.7e-101	47.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 140..296 e-value: 9.4E-17 score: 63.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..139 e-value: 5.2E-32 score: 113.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 44..227
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 75..121 e-value: 3.4E-9 score: 36.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 140..187 e-value: 0.0016 score: 18.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 49..74 e-value: 5.5E-7 score: 27.4 coord: 77..110 e-value: 1.8E-7 score: 28.9 coord: 112..147 e-value: 4.4E-4 score: 18.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 49..74 e-value: 2.3E-6 score: 27.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 75..109 score: 10.961357
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 44..74 score: 9.996763
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 110..145 score: 8.692369
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 248..357 e-value: 2.1E-33 score: 114.9
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..329
None	No IPR available	PANTHER	PTHR47926:SF143	BNAC01G35620D PROTEIN	coord: 1..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09592-RA	Carg09592-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding