Carg09544 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09544
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	nuclear pore complex protein NUP50A-like
Location	Carg_Chr17: 6758638 .. 6760059 (+)
RNA-Seq Expression	Carg09544
Synteny	Carg09544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAGCTATCACGAGATAACCCTGGGCTTGATGATGAAGAAGATGTTTCTGAGCAAGAGGCTGGAACGTTCAAGCGAGCTAGTGAAGAGGTCCTAGCCACCAGAAGAATTGTCAAAGTACGTCGTGGTCAAACTGCCTCTGCCCTGTCTTCTAATCCTTTTGCTGGAATACGCTTGGTACCTCCAACTGAAAATAGTGGAAGTGCTTCAGAAGTTAAAAGTGATGCAAAGGCAGCTGGTGAGAAAACTGGTTCAGATGAGGCAAAGCAAAAGGATGTTTCTCATGAAAAGATTCAAAAAGATGGTCATAGTGACGAGCCAGCAGAATGTAAACTTGACACATCAGAGGCCGAATCTGTTCCAAATGTGCAAAATGTTGATCAGAACAGCACTGTTGCAAGCGAATCTGCCATATCTGAGCTAGATGATAAACAAGTTACTGAGCGCAATAAGATTGAAAATGAAGTACCGGCTGGAGAAGATAAGAATGGCAATGAGGAACTTGTAAGAGATGAGAAGGCTGAGAATGATGAATGTGTAAGTGGCGGTAAGAATGACAATGGGGATCCTGCAAAAGGTGAAAAGAACGAAAATGAGGATCCTGCGAGAGATGCTAAGAATGAAAATGAAGAACCCAGTGAAGGAAATGAGATACAAAACAAGGAAACTGGGGATCAAGAAAAGACAGAAAATGAAGAAAACAAAGAAAACGGAAGTGAAACAGATCCTAGTAAGAAGGCTGGTCCTTTGAGCTCATTCCAACAATTATCAAGTAGCCAGAATGCCTTCACAGGTCTTGCCGGCACTGGACTTACGACATCTACATTCTCCTTTGGTAATATACCCAAGGATGGGGTTGGCCTGACTGCTAGTTTTGGTCTCTCTACTAATGGTAGCTCAGCCCTCTTTGGTACTTCAGGGTCTTCCACTGTTTCCAAGAGTGAGAAAAGTGGCTTTCCATCAATGCAAGAGGTTGCAGTTGAAACGGGTGAAGAAAATGAAAAAGTAGTCTTCAATGCTGATTCTATAATGTTCGAGTTTATCGATGGATCTTGGAAGGAACGTGGAAAGGGAGAGCTGAAAGTTAATGTCTCGACGAGTGGGACTGGTAGAGCAAGGATTCTTATGAGAGCTAGAGGAAATTACAGGCTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACGAACATGGACAAGAGAGGTATCACCTTTGCCTGCATGAACAGCGCCAGCGAAGGGAAGGATGGTCTCTCAACATATGGTTTGAAATTCAGGGATGTATCCATTGTGGAGGAGTTCCGAGCAGCAATCACTGAGCATAAAGGTAAAGCCTCTACAGTTCTGAAAACACCAGAGAATTCTCCTTAA

mRNA sequence

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAGCTATCACGAGATAACCCTGGGCTTGATGATGAAGAAGATGTTTCTGAGCAAGAGGCTGGAACGTTCAAGCGAGCTAGTGAAGAGGTCCTAGCCACCAGAAGAATTGTCAAAGTACGTCGTGGTCAAACTGCCTCTGCCCTGTCTTCTAATCCTTTTGCTGGAATACGCTTGGTACCTCCAACTGAAAATAGTGGAAGTGCTTCAGAAGTTAAAAGTGATGCAAAGGCAGCTGGTGAGAAAACTGGTTCAGATGAGGCAAAGCAAAAGGATGTTTCTCATGAAAAGATTCAAAAAGATGGTCATAGTGACGAGCCAGCAGAATGTAAACTTGACACATCAGAGGCCGAATCTGTTCCAAATGTGCAAAATGTTGATCAGAACAGCACTGTTGCAAGCGAATCTGCCATATCTGAGCTAGATGATAAACAAGTTACTGAGCGCAATAAGATTGAAAATGAAGTACCGGCTGGAGAAGATAAGAATGGCAATGAGGAACTTGTAAGAGATGAGAAGGCTGAGAATGATGAATGTGTAAGTGGCGGTAAGAATGACAATGGGGATCCTGCAAAAGGTGAAAAGAACGAAAATGAGGATCCTGCGAGAGATGCTAAGAATGAAAATGAAGAACCCAGTGAAGGAAATGAGATACAAAACAAGGAAACTGGGGATCAAGAAAAGACAGAAAATGAAGAAAACAAAGAAAACGGAAGTGAAACAGATCCTAGTAAGAAGGCTGGTCCTTTGAGCTCATTCCAACAATTATCAAGTAGCCAGAATGCCTTCACAGGTCTTGCCGGCACTGGACTTACGACATCTACATTCTCCTTTGGTAATATACCCAAGGATGGGGTTGGCCTGACTGCTAGTTTTGGTCTCTCTACTAATGGTAGCTCAGCCCTCTTTGGTACTTCAGGGTCTTCCACTGTTTCCAAGAGTGAGAAAAGTGGCTTTCCATCAATGCAAGAGGTTGCAGTTGAAACGGGTGAAGAAAATGAAAAAGTAGTCTTCAATGCTGATTCTATAATGTTCGAGTTTATCGATGGATCTTGGAAGGAACGTGGAAAGGGAGAGCTGAAAGTTAATGTCTCGACGAGTGGGACTGGTAGAGCAAGGATTCTTATGAGAGCTAGAGGAAATTACAGGCTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACGAACATGGACAAGAGAGGTATCACCTTTGCCTGCATGAACAGCGCCAGCGAAGGGAAGGATGGTCTCTCAACATATGGTTTGAAATTCAGGGATGTATCCATTGTGGAGGAGTTCCGAGCAGCAATCACTGAGCATAAAGGTAAAGCCTCTACAGTTCTGAAAACACCAGAGAATTCTCCTTAA

Coding sequence (CDS)

ATGGGGGATGCTGAAAATGCAACATCTACAAAGAAGAGGGCTGCTGGAAGGGAGCTATCACGAGATAACCCTGGGCTTGATGATGAAGAAGATGTTTCTGAGCAAGAGGCTGGAACGTTCAAGCGAGCTAGTGAAGAGGTCCTAGCCACCAGAAGAATTGTCAAAGTACGTCGTGGTCAAACTGCCTCTGCCCTGTCTTCTAATCCTTTTGCTGGAATACGCTTGGTACCTCCAACTGAAAATAGTGGAAGTGCTTCAGAAGTTAAAAGTGATGCAAAGGCAGCTGGTGAGAAAACTGGTTCAGATGAGGCAAAGCAAAAGGATGTTTCTCATGAAAAGATTCAAAAAGATGGTCATAGTGACGAGCCAGCAGAATGTAAACTTGACACATCAGAGGCCGAATCTGTTCCAAATGTGCAAAATGTTGATCAGAACAGCACTGTTGCAAGCGAATCTGCCATATCTGAGCTAGATGATAAACAAGTTACTGAGCGCAATAAGATTGAAAATGAAGTACCGGCTGGAGAAGATAAGAATGGCAATGAGGAACTTGTAAGAGATGAGAAGGCTGAGAATGATGAATGTGTAAGTGGCGGTAAGAATGACAATGGGGATCCTGCAAAAGGTGAAAAGAACGAAAATGAGGATCCTGCGAGAGATGCTAAGAATGAAAATGAAGAACCCAGTGAAGGAAATGAGATACAAAACAAGGAAACTGGGGATCAAGAAAAGACAGAAAATGAAGAAAACAAAGAAAACGGAAGTGAAACAGATCCTAGTAAGAAGGCTGGTCCTTTGAGCTCATTCCAACAATTATCAAGTAGCCAGAATGCCTTCACAGGTCTTGCCGGCACTGGACTTACGACATCTACATTCTCCTTTGGTAATATACCCAAGGATGGGGTTGGCCTGACTGCTAGTTTTGGTCTCTCTACTAATGGTAGCTCAGCCCTCTTTGGTACTTCAGGGTCTTCCACTGTTTCCAAGAGTGAGAAAAGTGGCTTTCCATCAATGCAAGAGGTTGCAGTTGAAACGGGTGAAGAAAATGAAAAAGTAGTCTTCAATGCTGATTCTATAATGTTCGAGTTTATCGATGGATCTTGGAAGGAACGTGGAAAGGGAGAGCTGAAAGTTAATGTCTCGACGAGTGGGACTGGTAGAGCAAGGATTCTTATGAGAGCTAGAGGAAATTACAGGCTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACGAACATGGACAAGAGAGGTATCACCTTTGCCTGCATGAACAGCGCCAGCGAAGGGAAGGATGGTCTCTCAACATATGGTTTGAAATTCAGGGATGTATCCATTGTGGAGGAGTTCCGAGCAGCAATCACTGAGCATAAAGGTAAAGCCTCTACAGTTCTGAAAACACCAGAGAATTCTCCTTAA

Protein sequence

MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQTASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHSDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNGNEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETGDQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKDGVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP

Homology

[Close]

BLAST of Carg09544 vs. NCBI nr
Match: KAG7014097.1 (Nuclear pore complex protein NUP50A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 866.7 bits (2238), Expect = 9.3e-248
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120
           TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS
Sbjct: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120

Query: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180
           DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180

Query: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240
           NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240

Query: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300
           DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD
Sbjct: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300

Query: 301 GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360
           GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM
Sbjct: 301 GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360

Query: 361 FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420
           FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI
Sbjct: 361 FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420

Query: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 474
           TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP
Sbjct: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 473

[Close]

BLAST of Carg09544 vs. NCBI nr
Match: KAG6575551.1 (Nuclear pore complex protein NUP50B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 864.0 bits (2231), Expect = 6.0e-247
Identity = 472/473 (99.79%), Postives = 472/473 (99.79%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120
           TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS
Sbjct: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120

Query: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180
           DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180

Query: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240
           NEELVRD KAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG
Sbjct: 181 NEELVRDGKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240

Query: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300
           DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD
Sbjct: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300

Query: 301 GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360
           GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM
Sbjct: 301 GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360

Query: 361 FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420
           FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI
Sbjct: 361 FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420

Query: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 474
           TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP
Sbjct: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 473

[Close]

BLAST of Carg09544 vs. NCBI nr
Match: XP_022953734.1 (nuclear pore complex protein NUP50B-like [Cucurbita moschata])

HSP 1 Score: 855.9 bits (2210), Expect = 1.6e-244
Identity = 467/473 (98.73%), Postives = 470/473 (99.37%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120
           TASA SSNPFAGIRLVPPTENSGSASEVKSDA+AAGEKTGSDEAKQKDVSHEKIQKDGHS
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSASEVKSDAQAAGEKTGSDEAKQKDVSHEKIQKDGHS 120

Query: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180
           DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENE+PAGEDKNG
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEIPAGEDKNG 180

Query: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240
           NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240

Query: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300
           DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD
Sbjct: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300

Query: 301 GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360
           GVGLTASFGLSTNGSSALFGTSGSS VSKSEKSGFPSMQEVAVETGEENEKVVF+ADSIM
Sbjct: 301 GVGLTASFGLSTNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFSADSIM 360

Query: 361 FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420
           FEFIDGSWKERGKGELKVNV TSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI
Sbjct: 361 FEFIDGSWKERGKGELKVNVPTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420

Query: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 474
           TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP
Sbjct: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 473

[Close]

BLAST of Carg09544 vs. NCBI nr
Match: XP_023548163.1 (nuclear pore complex protein NUP50B-like [Cucurbita pepo subsp. pepo] >XP_023548164.1 nuclear pore complex protein NUP50B-like [Cucurbita pepo subsp. pepo] >XP_023548165.1 nuclear pore complex protein NUP50B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 845.5 bits (2183), Expect = 2.2e-241
Identity = 463/473 (97.89%), Postives = 465/473 (98.31%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQE GTFKRASEEVLATRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQETGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120
            ASA SSNPFAGIRLVPPTENSGSASEVKSDA+AAGEKTGSDEA QKDVSHEKIQKDGHS
Sbjct: 61  AASAPSSNPFAGIRLVPPTENSGSASEVKSDAQAAGEKTGSDEANQKDVSHEKIQKDGHS 120

Query: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180
           DEPAECKLDTSEAESVPNV +VDQNSTVASESAISELDDKQVTERNKIENEV AGEDKNG
Sbjct: 121 DEPAECKLDTSEAESVPNVHHVDQNSTVASESAISELDDKQVTERNKIENEVRAGEDKNG 180

Query: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240
           NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240

Query: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300
           DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD
Sbjct: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300

Query: 301 GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360
           GVGLTASFGLSTNGSSALFGTSGSS VSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM
Sbjct: 301 GVGLTASFGLSTNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360

Query: 361 FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420
           FEFIDGSWKERGKGELKVNV TSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI
Sbjct: 361 FEFIDGSWKERGKGELKVNVPTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420

Query: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 474
           TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP
Sbjct: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 473

[Close]

BLAST of Carg09544 vs. NCBI nr
Match: XP_022992245.1 (nuclear pore complex protein NUP50B-like [Cucurbita maxima])

HSP 1 Score: 841.3 bits (2172), Expect = 4.2e-240
Identity = 463/476 (97.27%), Postives = 466/476 (97.90%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120
           TASA SSNPFAGIRLVPPTEN+GSASEVKSDA+AAGEKTGS+EAKQKDVSHEK QKDGHS
Sbjct: 61  TASAPSSNPFAGIRLVPPTENNGSASEVKSDAQAAGEKTGSNEAKQKDVSHEKFQKDGHS 120

Query: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180
           DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180

Query: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240
           NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEP EGNEIQNKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPIEGNEIQNKETG 240

Query: 241 DQEKTENE---ENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNI 300
           DQEK ENE   ENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGL TSTFSFGNI
Sbjct: 241 DQEKIENEENKENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLPTSTFSFGNI 300

Query: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360
           PKDGVGLTASFGLSTNGSSALFGTSGSS VSKSEKSGFPSMQEVAVETGEENEKVVFNAD
Sbjct: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360

Query: 361 SIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420
           SIMFEFIDGSWKERGKGELKVNV TSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK
Sbjct: 361 SIMFEFIDGSWKERGKGELKVNVPTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420

Query: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 474
           RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP
Sbjct: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 476

[Close]

BLAST of Carg09544 vs. ExPASy Swiss-Prot
Match: Q9C829 (Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE=1 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 3.6e-85
Identity = 223/488 (45.70%), Postives = 304/488 (62.30%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDD++D +E E+GTFK+AS+EVLA+RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  QTASA--LSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKD 120
           + ++A   +SNPFAGI+LVP T  + +++ V ++A  A  K    EA  +D  ++K    
Sbjct: 61  EPSAAPVAASNPFAGIQLVPTT--APASTPVGTNAPLAESKLAPAEAVVED--NQKASDI 120

Query: 121 GHSDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGED 180
              DE    K+D  +A                           + TE+ K +++   G  
Sbjct: 121 EEGDEVDSKKVDVKDAVG-------------------------EETEKTKDKDDNHCG-- 180

Query: 181 KNGNEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNK 240
           K+ + ++   E A+   C +   N+               A +  ++ + P E      K
Sbjct: 181 KSADVQVAATEVAQMVSCDTNVCNN---------------AVEGTDQTDFPLE------K 240

Query: 241 ETGDQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNI 300
           ++G  +  + E+      E D +   G  SSFQQ SS++NAFTGLA T  + S+FSFG +
Sbjct: 241 DSGGDQAEKKEKEGNGIEEADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSFGLV 300

Query: 301 PKD---GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVF 360
            +D   G G    FGL ++ SS++FG +GSS + KSE SGFP  QEV+ ETGEENEKV F
Sbjct: 301 SQDGSTGTGSLFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEKVAF 360

Query: 361 NADSIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTN 420
           +ADSIMFE++DG WKERGKGELKVNVS S  G+AR++MRA+GNYRLILNASLYP+MKL N
Sbjct: 361 SADSIMFEYLDGGWKERGKGELKVNVS-SNDGKARLVMRAKGNYRLILNASLYPEMKLAN 420

Query: 421 MDKRGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKG---------KASTV 474
           MDK+GITFAC+NS SEGK+GLST+ LKF+D +IVEEFR AI +HK          K++  
Sbjct: 421 MDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALP 435

[Close]

BLAST of Carg09544 vs. ExPASy Swiss-Prot
Match: Q9LW88 (Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana OX=3702 GN=NUP50B PE=1 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.4e-81
Identity = 219/493 (44.42%), Postives = 297/493 (60.24%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGL-DDEEDVSEQEAGTFKRASEEVLATRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGL DD+ED S  E+GTF  AS+EVLA+RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  GQTASAL--SSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQK 120
              ++    +SNPF GIRLVP T  + S         AA E T     K      ++   
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPST--------AAAETT-----KPLSAGKQETLA 120

Query: 121 DGHSDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGE 180
           DG SD   E   D+ E     +     +       +   ++ D    E ++  N V  G 
Sbjct: 121 DGRSDATKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGG 180

Query: 181 DKNGNEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQN 240
             N NE+ ++                  + A GE+   +D      N N    EG++   
Sbjct: 181 AVNKNEDEIKTTMVT-------------EVAAGEETVKDD------NNNSNTVEGSDCVV 240

Query: 241 KETGDQEKTENEENKENGSE-TDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFG 300
           K+TG  + TE E  + +G+E T+ +  +G LSSF Q SSS+NAFTGLA TG + S+FSFG
Sbjct: 241 KDTGGNQ-TEKEGKEGDGNEDTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFG 300

Query: 301 NIPKDG------VGLTASFGLSTNGSSALFGTSGSSTV---SKSEKSGFPSMQEVAVETG 360
            +P++G         + SFG + NG+S+LFG S ++++   S    + FPS Q+V+VETG
Sbjct: 301 LVPQEGSTGSGSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETG 360

Query: 361 EENEKVVFNADSIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASL 420
           EENEK  F ADS+MFE+++G WKERGKGELKVN+ST+   +AR++MR++GNYRL LNASL
Sbjct: 361 EENEKAAFTADSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASL 420

Query: 421 YPDMKLTNMDKRGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHK------G 474
           YP+MKL  MDK+GITFAC+NS S+ KDGLST  LKF+D ++VEEFRA I EHK       
Sbjct: 421 YPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVA 460

[Close]

BLAST of Carg09544 vs. ExPASy Swiss-Prot
Match: A0A0B4K7J2 (E3 SUMO-protein ligase RanBP2 OS=Drosophila melanogaster OX=7227 GN=Nup358 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-11
Identity = 45/139 (32.37%), Postives = 75/139 (53.96%), Query Frame = 0


Query: 336  PSMQEVAVETGEENEKVVFNADSIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRAR 395
            P   EV V TGEE E + F + + +F ++D  WKERG G +K+ +    TG +R+LMR  
Sbjct: 1315 PLPDEVEVRTGEEGEDIKFTSRAKLFRYVDKEWKERGTGVIKI-LCDKATGVSRVLMRRD 1374

Query: 396  GNYRLILNASLYPDMKLT----NMDKRGITFACMNSASEGKDGLSTYGLKFRDVSIVEEF 455
              +++  N ++  D+ +     + DK+ + +A  + A E +  L  + ++F+   + EEF
Sbjct: 1375 QTHKVCANHTITADITINVANQDKDKKSLLWAANDFADE-QVTLERFLVRFKTGELAEEF 1434

Query: 456  RAAITEHKGKASTVLKTPE 471
            R A T    KAS   K+ E
Sbjct: 1435 RVAFT----KASEAAKSKE 1447

[Close]

BLAST of Carg09544 vs. ExPASy Swiss-Prot
Match: Q86VV4 (Ran-binding protein 3-like OS=Homo sapiens OX=9606 GN=RANBP3L PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-06
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 0


Query: 294 FGNIPKDGVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVV 353
           F +IPK  V   +S   S   +S +     S+    S+ S    ++++ V TGEE E  V
Sbjct: 244 FKSIPKFPVNFLSSRTDSIKNTSLI----ESAAAFSSQPSRKCLLEKIDVITGEETEHNV 303

Query: 354 --FNADSIMFEFIDGSWKERGKGELKVNVSTS---GTGRARILMRARGNYRLILNASLYP 413
              N    +F     SW ERG+G L++N + S   GT ++R++MR +G+ RLILN+ L+ 
Sbjct: 304 LKINCKLFIFNKTTQSWIERGRGTLRLNDTASTDCGTLQSRLIMRNQGSLRLILNSKLWA 363

Query: 414 DMKLTNMDKRGI 421
            MK+   + + +
Sbjct: 364 QMKIQRANHKNV 371

[Close]

BLAST of Carg09544 vs. ExPASy TrEMBL
Match: A0A6J1GQJ1 (nuclear pore complex protein NUP50B-like OS=Cucurbita moschata OX=3662 GN=LOC111456179 PE=4 SV=1)

HSP 1 Score: 855.9 bits (2210), Expect = 7.9e-245
Identity = 467/473 (98.73%), Postives = 470/473 (99.37%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120
           TASA SSNPFAGIRLVPPTENSGSASEVKSDA+AAGEKTGSDEAKQKDVSHEKIQKDGHS
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSASEVKSDAQAAGEKTGSDEAKQKDVSHEKIQKDGHS 120

Query: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180
           DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENE+PAGEDKNG
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEIPAGEDKNG 180

Query: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240
           NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240

Query: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300
           DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD
Sbjct: 241 DQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNIPKD 300

Query: 301 GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNADSIM 360
           GVGLTASFGLSTNGSSALFGTSGSS VSKSEKSGFPSMQEVAVETGEENEKVVF+ADSIM
Sbjct: 301 GVGLTASFGLSTNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFSADSIM 360

Query: 361 FEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420
           FEFIDGSWKERGKGELKVNV TSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI
Sbjct: 361 FEFIDGSWKERGKGELKVNVPTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDKRGI 420

Query: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 474
           TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP
Sbjct: 421 TFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 473

[Close]

BLAST of Carg09544 vs. ExPASy TrEMBL
Match: A0A6J1JV59 (nuclear pore complex protein NUP50B-like OS=Cucurbita maxima OX=3661 GN=LOC111488624 PE=4 SV=1)

HSP 1 Score: 841.3 bits (2172), Expect = 2.0e-240
Identity = 463/476 (97.27%), Postives = 466/476 (97.90%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDGHS 120
           TASA SSNPFAGIRLVPPTEN+GSASEVKSDA+AAGEKTGS+EAKQKDVSHEK QKDGHS
Sbjct: 61  TASAPSSNPFAGIRLVPPTENNGSASEVKSDAQAAGEKTGSNEAKQKDVSHEKFQKDGHS 120

Query: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180
           DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG
Sbjct: 121 DEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKNG 180

Query: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNKETG 240
           NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEP EGNEIQNKETG
Sbjct: 181 NEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPIEGNEIQNKETG 240

Query: 241 DQEKTENE---ENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNI 300
           DQEK ENE   ENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGL TSTFSFGNI
Sbjct: 241 DQEKIENEENKENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLPTSTFSFGNI 300

Query: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360
           PKDGVGLTASFGLSTNGSSALFGTSGSS VSKSEKSGFPSMQEVAVETGEENEKVVFNAD
Sbjct: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360

Query: 361 SIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420
           SIMFEFIDGSWKERGKGELKVNV TSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK
Sbjct: 361 SIMFEFIDGSWKERGKGELKVNVPTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420

Query: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 474
           RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP
Sbjct: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKASTVLKTPENSP 476

[Close]

BLAST of Carg09544 vs. ExPASy TrEMBL
Match: A0A1S4E3Q0 (nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500566 PE=4 SV=1)

HSP 1 Score: 698.7 bits (1802), Expect = 1.6e-197
Identity = 395/477 (82.81%), Postives = 423/477 (88.68%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPG DD+EDVSEQE GTFKRASEEVLATRRIVKVRRG 
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDG-H 120
           TASA SSNPFAGIRLVPPTENSGS +EV+ D +AA EK GSDEA  KD+ HE  QKDG H
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 SDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKN 180
           SDEP +CK+DTSEA+SVP VQ VDQNSTV SESAIS++DD  V E NKIENE PAG DK 
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 GNEELVRD--EKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNK 240
           GNEELVRD  +++ENDECVS            +KNE+E PAR  KNENEEPSEGNEIQNK
Sbjct: 181 GNEELVRDAEKESENDECVS-----------CDKNEDEVPARGDKNENEEPSEGNEIQNK 240

Query: 241 ETGDQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNI 300
           ETG+QEKTENEENKE+ SE +PSK+A PL+SFQQLSSSQNAFTGLAGTG +TSTFSFGNI
Sbjct: 241 ETGEQEKTENEENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNI 300

Query: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360
           PKDGVGLT SFGLS NGSSALFGTSGSSTVSKSE+SGFPSMQEVAVETGEENEKVVFNAD
Sbjct: 301 PKDGVGLTTSFGLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNAD 360

Query: 361 SIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420
           SI+FEFIDGSWKERGKGELKVNV TSGTGR RILMRARGNYRLILNASLYPDMKLTNMDK
Sbjct: 361 SILFEFIDGSWKERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDK 420

Query: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKA-STVLKTPENSP 474
           RGITFACMNS  +GKDGLST+G+KF+DVSIVEEFRAA+TEHKGKA STVLKTPENSP
Sbjct: 421 RGITFACMNSTIDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of Carg09544 vs. ExPASy TrEMBL
Match: A0A5D3BX12 (Nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002470 PE=4 SV=1)

HSP 1 Score: 698.7 bits (1802), Expect = 1.6e-197
Identity = 395/477 (82.81%), Postives = 423/477 (88.68%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPG DD+EDVSEQE GTFKRASEEVLATRRIVKVRRG 
Sbjct: 29  MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 88

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDG-H 120
           TASA SSNPFAGIRLVPPTENSGS +EV+ D +AA EK GSDEA  KD+ HE  QKDG H
Sbjct: 89  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 148

Query: 121 SDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKN 180
           SDEP +CK+DTSEA+SVP VQ VDQNSTV SESAIS++DD  V E NKIENE PAG DK 
Sbjct: 149 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 208

Query: 181 GNEELVRD--EKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNK 240
           GNEELVRD  +++ENDECVS            +KNE+E PAR  KNENEEPSEGNEIQNK
Sbjct: 209 GNEELVRDAEKESENDECVS-----------CDKNEDEVPARGDKNENEEPSEGNEIQNK 268

Query: 241 ETGDQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNI 300
           ETG+QEKTENEENKE+ SE +PSK+A PL+SFQQLSSSQNAFTGLAGTG +TSTFSFGNI
Sbjct: 269 ETGEQEKTENEENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNI 328

Query: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360
           PKDGVGLT SFGLS NGSSALFGTSGSSTVSKSE+SGFPSMQEVAVETGEENEKVVFNAD
Sbjct: 329 PKDGVGLTTSFGLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNAD 388

Query: 361 SIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420
           SI+FEFIDGSWKERGKGELKVNV TSGTGR RILMRARGNYRLILNASLYPDMKLTNMDK
Sbjct: 389 SILFEFIDGSWKERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDK 448

Query: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKA-STVLKTPENSP 474
           RGITFACMNS  +GKDGLST+G+KF+DVSIVEEFRAA+TEHKGKA STVLKTPENSP
Sbjct: 449 RGITFACMNSTIDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 494

[Close]

BLAST of Carg09544 vs. ExPASy TrEMBL
Match: A0A0A0KAD0 (RanBD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G446650 PE=4 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 9.8e-195
Identity = 387/477 (81.13%), Postives = 421/477 (88.26%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRGQ 60
           MGDAENATSTKKRAAGRELSRDNPGLDD+EDVSEQE GTFKRASEEVLATRRIVKVRRG 
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TASALSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKDG-H 120
           TASA SSNPFAGIRLVPPTENSGS +EV+ D +AAGEK GSDEA  KD+ HE  QKDG H
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVRRDTEAAGEKAGSDEANGKDIPHEMTQKDGDH 120

Query: 121 SDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGEDKN 180
           SD+P + K+DTSEA+SVP VQ VDQNSTV+SESAIS++DD  V+E NKIENE P G DK 
Sbjct: 121 SDDPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180

Query: 181 GNEELVRD--EKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNK 240
           GNEELVRD  +++ENDEC SG KN++ DP +G+           KNE+EEPSEGNEIQNK
Sbjct: 181 GNEELVRDAEKESENDECASGNKNEDADPERGD-----------KNESEEPSEGNEIQNK 240

Query: 241 ETGDQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNI 300
           ETG+ EKTE+EENKE+ SE +PSK+A PL+SFQQLSSSQNAFTGLAGTG +TSTFSFGNI
Sbjct: 241 ETGELEKTESEENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNI 300

Query: 301 PKDGVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360
           PKDGVGLT SFGLS NGSSALFGTSGSS VSKSEKSGFPSMQEVAVETGEENEKVVFNAD
Sbjct: 301 PKDGVGLTTSFGLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNAD 360

Query: 361 SIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTNMDK 420
           SI+FEFIDGSWKERGKGELKVNV TSG GR RILMRARGNYRLILNASLYPDMKLTNMDK
Sbjct: 361 SILFEFIDGSWKERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDK 420

Query: 421 RGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKGKA-STVLKTPENSP 474
           RGITFACMNS ++GK GLST G+KF+DVSIVEEFRAA+TEHKGKA STVLKTPENSP
Sbjct: 421 RGITFACMNSTNDGKVGLSTLGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of Carg09544 vs. TAIR 10
Match: AT1G52380.1 (NUP50 (Nucleoporin 50 kDa) protein )

HSP 1 Score: 317.0 bits (811), Expect = 2.6e-86
Identity = 223/488 (45.70%), Postives = 304/488 (62.30%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDEEDVSEQEAGTFKRASEEVLATRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDD++D +E E+GTFK+AS+EVLA+RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  QTASA--LSSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQKD 120
           + ++A   +SNPFAGI+LVP T  + +++ V ++A  A  K    EA  +D  ++K    
Sbjct: 61  EPSAAPVAASNPFAGIQLVPTT--APASTPVGTNAPLAESKLAPAEAVVED--NQKASDI 120

Query: 121 GHSDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGED 180
              DE    K+D  +A                           + TE+ K +++   G  
Sbjct: 121 EEGDEVDSKKVDVKDAVG-------------------------EETEKTKDKDDNHCG-- 180

Query: 181 KNGNEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQNK 240
           K+ + ++   E A+   C +   N+               A +  ++ + P E      K
Sbjct: 181 KSADVQVAATEVAQMVSCDTNVCNN---------------AVEGTDQTDFPLE------K 240

Query: 241 ETGDQEKTENEENKENGSETDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFGNI 300
           ++G  +  + E+      E D +   G  SSFQQ SS++NAFTGLA T  + S+FSFG +
Sbjct: 241 DSGGDQAEKKEKEGNGIEEADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSFGLV 300

Query: 301 PKD---GVGLTASFGLSTNGSSALFGTSGSSTVSKSEKSGFPSMQEVAVETGEENEKVVF 360
            +D   G G    FGL ++ SS++FG +GSS + KSE SGFP  QEV+ ETGEENEKV F
Sbjct: 301 SQDGSTGTGSLFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEKVAF 360

Query: 361 NADSIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASLYPDMKLTN 420
           +ADSIMFE++DG WKERGKGELKVNVS S  G+AR++MRA+GNYRLILNASLYP+MKL N
Sbjct: 361 SADSIMFEYLDGGWKERGKGELKVNVS-SNDGKARLVMRAKGNYRLILNASLYPEMKLAN 420

Query: 421 MDKRGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHKG---------KASTV 474
           MDK+GITFAC+NS SEGK+GLST+ LKF+D +IVEEFR AI +HK          K++  
Sbjct: 421 MDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALP 435

[Close]

BLAST of Carg09544 vs. TAIR 10
Match: AT3G15970.1 (NUP50 (Nucleoporin 50 kDa) protein )

HSP 1 Score: 305.1 bits (780), Expect = 1.0e-82
Identity = 219/493 (44.42%), Postives = 297/493 (60.24%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGL-DDEEDVSEQEAGTFKRASEEVLATRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGL DD+ED S  E+GTF  AS+EVLA+RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  GQTASAL--SSNPFAGIRLVPPTENSGSASEVKSDAKAAGEKTGSDEAKQKDVSHEKIQK 120
              ++    +SNPF GIRLVP T  + S         AA E T     K      ++   
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPST--------AAAETT-----KPLSAGKQETLA 120

Query: 121 DGHSDEPAECKLDTSEAESVPNVQNVDQNSTVASESAISELDDKQVTERNKIENEVPAGE 180
           DG SD   E   D+ E     +     +       +   ++ D    E ++  N V  G 
Sbjct: 121 DGRSDATKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGG 180

Query: 181 DKNGNEELVRDEKAENDECVSGGKNDNGDPAKGEKNENEDPARDAKNENEEPSEGNEIQN 240
             N NE+ ++                  + A GE+   +D      N N    EG++   
Sbjct: 181 AVNKNEDEIKTTMVT-------------EVAAGEETVKDD------NNNSNTVEGSDCVV 240

Query: 241 KETGDQEKTENEENKENGSE-TDPSKKAGPLSSFQQLSSSQNAFTGLAGTGLTTSTFSFG 300
           K+TG  + TE E  + +G+E T+ +  +G LSSF Q SSS+NAFTGLA TG + S+FSFG
Sbjct: 241 KDTGGNQ-TEKEGKEGDGNEDTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFG 300

Query: 301 NIPKDG------VGLTASFGLSTNGSSALFGTSGSSTV---SKSEKSGFPSMQEVAVETG 360
            +P++G         + SFG + NG+S+LFG S ++++   S    + FPS Q+V+VETG
Sbjct: 301 LVPQEGSTGSGSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETG 360

Query: 361 EENEKVVFNADSIMFEFIDGSWKERGKGELKVNVSTSGTGRARILMRARGNYRLILNASL 420
           EENEK  F ADS+MFE+++G WKERGKGELKVN+ST+   +AR++MR++GNYRL LNASL
Sbjct: 361 EENEKAAFTADSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASL 420

Query: 421 YPDMKLTNMDKRGITFACMNSASEGKDGLSTYGLKFRDVSIVEEFRAAITEHK------G 474
           YP+MKL  MDK+GITFAC+NS S+ KDGLST  LKF+D ++VEEFRA I EHK       
Sbjct: 421 YPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVA 460

The following BLAST results are available for this feature:

BLAST of Carg09544 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014097.1	9.3e-248	100.00	Nuclear pore complex protein NUP50A, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG6575551.1	6.0e-247	99.79	Nuclear pore complex protein NUP50B, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022953734.1	1.6e-244	98.73	nuclear pore complex protein NUP50B-like [Cucurbita moschata]	[more]
XP_023548163.1	2.2e-241	97.89	nuclear pore complex protein NUP50B-like [Cucurbita pepo subsp. pepo] >XP_023548...	[more]
XP_022992245.1	4.2e-240	97.27	nuclear pore complex protein NUP50B-like [Cucurbita maxima]	[more]

BLAST of Carg09544 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C829	3.6e-85	45.70	Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE...	[more]
Q9LW88	1.4e-81	44.42	Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana OX=3702 GN=NUP50B PE...	[more]
A0A0B4K7J2	3.4e-11	32.37	E3 SUMO-protein ligase RanBP2 OS=Drosophila melanogaster OX=7227 GN=Nup358 PE=1 ...	[more]
Q86VV4	5.7e-06	32.58	Ran-binding protein 3-like OS=Homo sapiens OX=9606 GN=RANBP3L PE=1 SV=2	[more]

BLAST of Carg09544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQJ1	7.9e-245	98.73	nuclear pore complex protein NUP50B-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JV59	2.0e-240	97.27	nuclear pore complex protein NUP50B-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A1S4E3Q0	1.6e-197	82.81	nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3BX12	1.6e-197	82.81	Nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KAD0	9.8e-195	81.13	RanBD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G446650 PE=4...	[more]

BLAST of Carg09544 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52380.1	2.6e-86	45.70	NUP50 (Nucleoporin 50 kDa) protein	[more]
AT3G15970.1	1.0e-82	44.42	NUP50 (Nucleoporin 50 kDa) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 332..458 e-value: 2.9E-15 score: 66.7
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 343..459 e-value: 1.1E-16 score: 61.2
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 335..464 score: 17.476944
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 322..469 e-value: 2.4E-34 score: 120.2
IPR015007	Nuclear pore complex, NUP2/50/61	PFAM	PF08911	NUP50	coord: 12..73 e-value: 1.3E-14 score: 54.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..271
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..473
None	No IPR available	PANTHER	PTHR23138:SF142	NUCLEAR PORE COMPLEX PROTEIN NUP50A-RELATED	coord: 1..473
None	No IPR available	CDD	cd13169	RanBD_NUP50_plant	coord: 345..462 e-value: 9.79987E-65 score: 202.679
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 335..461

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09544-RA	Carg09544-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
biological_process	GO:0051028	mRNA transport
biological_process	GO:0015031	protein transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0005096	GTPase activator activity