Carg09540 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09540
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 6720467 .. 6721542 (+)
RNA-Seq ExpressionCarg09540
SyntenyCarg09540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTTGTATGCTACCAATAATTGCAGCAAGTCACGAGATGTCGTCCACCGTCGTCGGTACCGAACGCATGATGGTTTCACACACAATGTATTGAAGTTCAAGTGGTAAGTTGCTGAAAGAAACAGAGAGGAGGTATGATTGTGTGAAGCTTGCCATGTATAATCAGTAGCTCCCCTAGGTTTTTGTTTGTCCAGTTCTTCCATGCAAGAGTCCTTTGTTCAAGCAATACATCCATTATTTTGTATGGATCATTCTTGATCATGATTTTTTTTTTCTTTCCCAATTATATAATTATTAAATTCAAAAATTTAGAACATCCATCGAACGACTTGCATATAGCGTAACAAAATTGATGATATAAAACTTTTGAGAATTCGAATTAACGATCTTGGTGAAGAACAAGACTTTTAGATCTAAAAACTAAAGATTCGTAAGTAATCTATGGTTAATAATCACGGGTTAAATTATAACCTAAAATCTTAAAAATAATATTTTAAAATTAAAAATAATAATAAAACCTTCTTAAATTCAAACACGGGTCTGTTTTTATTTTTTATTTTTAATTATTAAATTTTTTAAAACTTTTGATTATGATTATGTTTAAAATAAAATATTAAAATTTATATATCTTCCAATTTAATAACATAATTCAAAACATTTTAACATATGCTTTTTCCATTATTTTAAAAAATTACTCCCAAAATTTAAAAAAGTTAATATTTTTGTGTAATTATTAAAAAAATTTAACTCTCGAAATTAAAAATAAAAATAAATAATATATTATATATATTGTCAAATTACTAAAATGTGGGGACCACGACTGTGATTTAAACTAATAATCAATATATAATACCATTTTAATTATGGAAGTAATGGAAACTACGATTTTACATTACAACTGTAGCGCATCTGGACGAAAGAATTTTCATCACAAGCGGCACGGACACGACCGAGCTATCAGAAGAAGAGAAGGGTGAAGAAACTTTGTCCGGAATCCTGAATTTTGCTGCCGGGTGTTTCAATTTGTCTCATCTCGATCTCAAGATTGATGCCTTTATGTTTCAGACTTGA

mRNA sequence

ATGGCCCTTTGTATGCTACCAATAATTGCAGCAAGTCACGAGATGTCGTCCACCGTCGTCGCGCATCTGGACGAAAGAATTTTCATCACAAGCGGCACGGACACGACCGAGCTATCAGAAGAAGAGAAGGGTGAAGAAACTTTGTCCGGAATCCTGAATTTTGCTGCCGGGTGTTTCAATTTGTCTCATCTCGATCTCAAGATTGATGCCTTTATGTTTCAGACTTGA

Coding sequence (CDS)

ATGGCCCTTTGTATGCTACCAATAATTGCAGCAAGTCACGAGATGTCGTCCACCGTCGTCGCGCATCTGGACGAAAGAATTTTCATCACAAGCGGCACGGACACGACCGAGCTATCAGAAGAAGAGAAGGGTGAAGAAACTTTGTCCGGAATCCTGAATTTTGCTGCCGGGTGTTTCAATTTGTCTCATCTCGATCTCAAGATTGATGCCTTTATGTTTCAGACTTGA

Protein sequence

MALCMLPIIAASHEMSSTVVAHLDERIFITSGTDTTELSEEEKGEETLSGILNFAAGCFNLSHLDLKIDAFMFQT
Homology
[Close]
BLAST of Carg09540 vs. NCBI nr
Match: KAG7014093.1 (hypothetical protein SDJN02_24266, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MALCMLPIIAASHEMSSTVVAHLDERIFITSGTDTTELSEEEKGEETLSGILNFAAGCFN 60
          MALCMLPIIAASHEMSSTVVAHLDERIFITSGTDTTELSEEEKGEETLSGILNFAAGCFN
Sbjct: 1  MALCMLPIIAASHEMSSTVVAHLDERIFITSGTDTTELSEEEKGEETLSGILNFAAGCFN 60

Query: 61 LSHLDLKIDAFMFQT 76
          LSHLDLKIDAFMFQT
Sbjct: 61 LSHLDLKIDAFMFQT 75

[Close]
BLAST of Carg09540 vs. NCBI nr
Match: KAG6575548.1 (Protein SYS1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MALCMLPIIAASHEMSSTVVAHLDERIFITSGTDTTELSEEEKGEETLSGILNFAAG 58
          MALCMLPIIAASHEMSSTVVAHLDERIFITSGTDTTELSEEEKGEETLSGILNFAAG
Sbjct: 1  MALCMLPIIAASHEMSSTVVAHLDERIFITSGTDTTELSEEEKGEETLSGILNFAAG 57

The following BLAST results are available for this feature:
BLAST of Carg09540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014093.16.0e-32100.00hypothetical protein SDJN02_24266, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575548.11.4e-20100.00Protein SYS1-like protein, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg09540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09540-RACarg09540-RAmRNA