Carg09456 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09456
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 6253058 .. 6255692 (-)
RNA-Seq Expression	Carg09456
Synteny	Carg09456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGAAAGTAGAAAAGAATCAGAATTCGTAGTTCTACTTGTGAAATTTGTAGAAGCCCTAGTGAGGAGAAATCTATGTTTATTGAAGAGATAATTACATTACAATGGTTTGAAAAGGTCACCACTAATTCAAAGGCCTTGAATTGATGGGCCTGGAGAAATTTAATCCTGTATCTAAATTTTAAACCCCTGTATTCGTTTTTTGCACCCTCCCTGTGGATTTAGTGGGAGAAAACGTCTTGATTTCTGTTTGCTTCATGATAGATTACTAGATTACATACTTTTGAACCATGCGACCATGGTCGGAATTGCTTGTTCACAGAATGTATGATTAGGGTACGTTTTAGTTCTAACATTGGTCTTCCACCGTTTATCTCGCGGCTTCAACGTGGAAATGGAGTTCTTTTTTGAATTCTTCTCCGTTCTGTAATATTTAGAGCATATGTTCTTTCATTCAAGTGTTAATTTCACATTCTTACTGTTTGCCTAGAGGGCTGGCTTCTAAGAATACTGAAGGGAGGATATTGTGAGCAAAAGTCTTCTGAAGTCTGTTTTCTGGGAGACCAGCTGCTGCAAGCTAAGGCTCTAACTGAAAAGGGACGGTGTTTCTATCTGGTACTTTCTTCTCCCCTTTCTCTCTTTTTCCCTTTTTTTTTTCCTCTTTTGGGACTGGACTATGAGATTTATACTTTCTTTCAGTGTTTATTATCAAATACTTATTGGGGTTGAGTTGGATGGTTGTTGAGAATGAAGAAACTGATGACTTCTTTAATGTTGTTAACTTGCACTTTAGTCTATGAAAAGGGTTAATCAATAATTTGATATATAGTGAAATAACCAGTTACATTGTCAATGACTCAACACAAGTGGAAGCCTACTGATTTAGGCACTCTTGGTGTGCGTACTGGATGTGCCTCACTATGTTTTATGCCTTTTCAACATTTTAGAGAATGAACAGCATTCTCGACGTGCTTCTAGAGAATAAAGACTTTCTGGTTTTATCATAATGACATGTTCAGGAGGGCAATTAGTTCAGAATTGGAGCGCTTGAAAATGTGATTGGATTGTCAAATTTACTAGAATTGTATTTGAACTCCTAAACTAGTATTCACATATATGAGGGCTTCACCCAAAGTTACTATTATTGCCGAGGGCGAGGATGCTCAAGTGACAAGGCCTTGAGATGTTGGGAACTTTGGAGATACTTCCATGGGTCTGGGAATTCAAGCCTTAGGTTAAAAATTTGAGTTTTATTTCTAGTAAGTCTTTGACTTTGTTTCTAATAAATCCATAAATTTAAAGAAGTGTCTATTAAATCTTTACACTTTCTATTTTGTATCTTATAGGTCAGTGGCTCATTCATTTGCTACCTATTTAGTTTTTGGCTTTTAAAAATGATGTTTCTTTTCTCACATTTCTTTACAAAGGTTTTCATTTTTCCCAAGTAAACGTTCGAATCATTTGCCAAATTCAAAAAACAAAAACTAGTTTTTTTAGTTCAACAATTGTGGGAATGAAAGTTTGAACCGTTAACCTTTTTATGGTAATTTGTGTCTTATCTATTGAGTTATGATTGGATTCACAAACAAAAACAAGTTCTTAATTTTTTATTTTTTATTTTCAAAATTTCGCTTGGATTTTGATGACTCTTTGAAAGTAGATAACAAAACAAAAATTAAATAGTTATGAAACAAAGTCTAAGAGTTCTGATTGAGATAAAGTAGTAAATGCAAAGATCTGCTAGAAATTTTATAAAGTTCAATGACTTACCAGACATAACCTTGATTCTTCAAGAATCAAATTGGTATTTTGACCAAAATTTGACAATTTAGTCCCATTTGATAACAATTTTGCTTTGTTTTCTCACCTGTCTTAGCAATGGTTTTCATATTTTCCTAAATAAACACTTGAGTTCATGTCTAGAATCCAAAAACAAAAACAAGTTTCTAAAATCTACTAATTCCTAATTTTCAAAACTTGGCTTGGATTTTGCAAAAAACAAAAAAGTAATCTTAGTTTTAAAAAACCAAATGGTTAACAAACAAGCTTAAAACTCTTAATTTCTCTGTCTGGCTTTGGGATGAGCATCTGTGAAAGTTAGAAGGTTATGGGTCATTAGCATAAGTGGAGCATCAATATAGTGAGTGCAACTCTATGTTGATGTTTAGTCATTTTTGTGGCAGATTTGTGTTTTAGTTTGTTGAATATTGCACACAGATTTTGTACACAAGAATAATCGTAAATTGTTGCAGAACATTTATTGATTTACAGTTTATTAAACTCAGAGACACATCTCCTGAATGCCAAGAGTAGTACACCATGTAGTACTTGAGCATTATTAGGTACCCATTTTTGTATCACGTCCAAAGCTGCACCCCTAAGATTGTAACTGTTCAAACTGCAGAAAACTCTAAACCCAAAGCCCTAAACATGGCAATAAAACCCACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATCGCTGGTGCAATGAAAGCTGCAGGTGGCGTAAAGTTAGGTGCAGCCACGGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCCAAACACCCTCCAAAATGA

mRNA sequence

ATGGATGAGAAAGTAGAAAAGAATCAGAATTCATTACTAGATTACATACTTTTGAACCATGCGACCATGGTCGGAATTGCTTGTTCACAGAATGGCTGGCTTCTAAGAATACTGAAGGGAGGATATTGTGAGCAAAAGTCTTCTGAAGTCTGTTTTCTGGGAGACCAGCTGCTGCAAGCTAAGGCTCTAACTGAAAAGGGACGGAGGGCAATTAGTTCAGAATTGGAGCGCTTGAAAATGTACCCATTTTTGTATCACGTCCAAAGCTGCACCCCTAAGATTGTAACTGTTCAAACTGCAGAAAACTCTAAACCCAAAGCCCTAAACATGGCAATAAAACCCACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATCGCTGGTGCAATGAAAGCTGCAGGTGGCGTAAAGTTAGGTGCAGCCACGGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCCAAACACCCTCCAAAATGA

Coding sequence (CDS)

ATGGATGAGAAAGTAGAAAAGAATCAGAATTCATTACTAGATTACATACTTTTGAACCATGCGACCATGGTCGGAATTGCTTGTTCACAGAATGGCTGGCTTCTAAGAATACTGAAGGGAGGATATTGTGAGCAAAAGTCTTCTGAAGTCTGTTTTCTGGGAGACCAGCTGCTGCAAGCTAAGGCTCTAACTGAAAAGGGACGGAGGGCAATTAGTTCAGAATTGGAGCGCTTGAAAATGTACCCATTTTTGTATCACGTCCAAAGCTGCACCCCTAAGATTGTAACTGTTCAAACTGCAGAAAACTCTAAACCCAAAGCCCTAAACATGGCAATAAAACCCACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATCGCTGGTGCAATGAAAGCTGCAGGTGGCGTAAAGTTAGGTGCAGCCACGGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCCAAACACCCTCCAAAATGA

Protein sequence

MDEKVEKNQNSLLDYILLNHATMVGIACSQNGWLLRILKGGYCEQKSSEVCFLGDQLLQAKALTEKGRRAISSELERLKMYPFLYHVQSCTPKIVTVQTAENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDDSKHPPK

Homology

[Close]

BLAST of Carg09456 vs. NCBI nr
Match: KAG7014012.1 (hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MDEKVEKNQNSLLDYILLNHATMVGIACSQNGWLLRILKGGYCEQKSSEVCFLGDQLLQA 60
           MDEKVEKNQNSLLDYILLNHATMVGIACSQNGWLLRILKGGYCEQKSSEVCFLGDQLLQA
Sbjct: 1   MDEKVEKNQNSLLDYILLNHATMVGIACSQNGWLLRILKGGYCEQKSSEVCFLGDQLLQA 60

Query: 61  KALTEKGRRAISSELERLKMYPFLYHVQSCTPKIVTVQTAENSKPKALNMAIKPTVALRA 120
           KALTEKGRRAISSELERLKMYPFLYHVQSCTPKIVTVQTAENSKPKALNMAIKPTVALRA
Sbjct: 61  KALTEKGRRAISSELERLKMYPFLYHVQSCTPKIVTVQTAENSKPKALNMAIKPTVALRA 120

Query: 121 VLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDDSKHPPK 176
           VLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDDSKHPPK
Sbjct: 121 VLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDDSKHPPK 175

[Close]

BLAST of Carg09456 vs. NCBI nr
Match: KAG6575471.1 (hypothetical protein SDJN03_26110, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-27
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 96  TVQTAENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAA 155
           TV  +ENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAA
Sbjct: 9   TVFLSENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAA 68

Query: 156 TAALAGSKQDQKDDSKHPPK 176
           TAALAGSKQDQKDDSKHPPK
Sbjct: 69  TAALAGSKQDQKDDSKHPPK 88

[Close]

BLAST of Carg09456 vs. NCBI nr
Match: XP_022954259.1 (uncharacterized protein LOC111456569 [Cucurbita moschata] >XP_023547452.1 uncharacterized protein LOC111806392 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 5.0e-21
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1   MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 170 SKHPPK 176
           SKHPPK
Sbjct: 61  SKHPPK 66

[Close]

BLAST of Carg09456 vs. NCBI nr
Match: XP_022992464.1 (uncharacterized protein LOC111488760 [Cucurbita maxima])

HSP 1 Score: 111.7 bits (278), Expect = 6.5e-21
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1   MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 170 SKHPPK 176
           SKHPPK
Sbjct: 61  SKHPPK 66

[Close]

BLAST of Carg09456 vs. NCBI nr
Match: XP_022143791.1 (uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143800.1 uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143809.1 uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143817.1 uncharacterized protein LOC111013620 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-20
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           M +KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1   MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 170 SKHPPK 176
           SKHPPK
Sbjct: 61  SKHPPK 66

[Close]

BLAST of Carg09456 vs. ExPASy TrEMBL
Match: A0A6J1GSG6 (uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC111456569 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1   MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 170 SKHPPK 176
           SKHPPK
Sbjct: 61  SKHPPK 66

[Close]

BLAST of Carg09456 vs. ExPASy TrEMBL
Match: A0A6J1JXL7 (uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1   MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 170 SKHPPK 176
           SKHPPK
Sbjct: 61  SKHPPK 66

[Close]

BLAST of Carg09456 vs. ExPASy TrEMBL
Match: A0A6J1CPT9 (uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013620 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.5e-20
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           M +KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1   MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 170 SKHPPK 176
           SKHPPK
Sbjct: 61  SKHPPK 66

[Close]

BLAST of Carg09456 vs. ExPASy TrEMBL
Match: A0A5A7UXR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00940 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1   MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 170 SKHPPK 176
           SKH PK
Sbjct: 61  SKHSPK 66

[Close]

BLAST of Carg09456 vs. ExPASy TrEMBL
Match: E5GCB3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169
           MA+KPTVALRAVLVGGIAAFAK+AGAMKAAGG KLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1   MAVKPTVALRAVLVGGIAAFAKLAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 170 SKHPPK 176
           SKH PK
Sbjct: 61  SKHSPK 66

[Close]

BLAST of Carg09456 vs. TAIR 10
Match: AT3G13845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA-GSKQDQKD 169
           M++KPTVALR +LVGG+A FAK+A AMKAAGGVKLGAA  AMT AATAA++ GSKQDQK 
Sbjct: 1   MSVKPTVALRGILVGGVAIFAKVAAAMKAAGGVKLGAAATAMTVAATAAVSGGSKQDQKQ 60

Query: 170 D-SKHPP 175
           D SK PP
Sbjct: 61  DASKAPP 67

The following BLAST results are available for this feature:

BLAST of Carg09456 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014012.1	1.2e-86	100.00	hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575471.1	3.5e-27	96.25	hypothetical protein SDJN03_26110, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954259.1	5.0e-21	100.00	uncharacterized protein LOC111456569 [Cucurbita moschata] >XP_023547452.1 unchar...	[more]
XP_022992464.1	6.5e-21	98.48	uncharacterized protein LOC111488760 [Cucurbita maxima]	[more]
XP_022143791.1	7.2e-20	95.45	uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143800.1 uncha...	[more]

BLAST of Carg09456 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSG6	2.4e-21	100.00	uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC1114565...	[more]
A0A6J1JXL7	3.1e-21	98.48	uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760...	[more]
A0A6J1CPT9	3.5e-20	95.45	uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5A7UXR8	1.7e-19	93.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB3	2.9e-19	92.42	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Carg09456 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13845.1	3.3e-15	74.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36755	PROTEIN, PUTATIVE-RELATED	coord: 99..174
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09456-RA	Carg09456-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane