Carg09453 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09453
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	EPIDERMAL PATTERNING FACTOR-like protein 4-like
Location	Carg_Chr17: 6221750 .. 6223127 (-)
RNA-Seq Expression	Carg09453
Synteny	Carg09453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTATACCGTCAGTTTCGTCGTAAACGGGGGAAGGGATGGTCCAGCGAGCGGACAGAAGAGCGAGGCCGGGTTAATCAATCCCAAGGAAAATCTCGAATGGCGGATCAAAAGACTGAGATCAAAGATTCTTCCTCAGGTACTTCCAATCGTTCAATCTCTTTATCGTTCTAATCAACTTCAATTGAGCTGCTGTTGTTTTTTATCGTTCTGATGTTATGTGCGTCTCTTCAATTTGCTGTTTCTGAATATAATTCGCTTGAAGTTATTGCATTAAGTAAGGATCATCCAGTGGAATACAAGTGATAACGTATTTCATCTCTTACAGTGTTTTATTGTCGGCGATTGGTGCGATATGGAGCTAGAAAACACTTGACAGCCCGTATTTTCAGTAATTAGTGGCGTTGATTGGTTACTACGGCTATTTTTAAGGCAATGTTTGATTTCAAATTATTAGAACGGTTTAATGTTCTAGGATTCATTAATTCAATGGGAATTATGTTTAGTTGAAAGGAATCGGCTGTCATTTCTGAAGAGGAACTTTTCCTTCTGCGTTCTTTACAGCAAGTTATTATCATAGTGCATGAATTTTGAACTTGTGGTTGTTAAGGTGTTGCTCCAATTGTTTATGAGGAGTTTTTATAGATCAGAGCTCAAATGAGCTCTCTGTTATTGTGAGATCTCACGTTGGTTGGGGAGGGGAATGAAATATTCCTTATAAGAGTGTGGAAACCTCTTCCTAACAGGCTTGTTTTAAAACCTTGAGGGGAAGCCCTTGAAGAGAAAGCCTAAAGAGGACAATATCTACTAATGATGGGCTTGGTCTGTTACAAATGGTATCAGAGCCAGTCATGGTACGAGGACGTTGGGCCCAAGAAGGGTGAATTGTGAGATCCCACATTGGTTAGAGAGGGGAACGAAGCATTCTTTATATGGGTGTGAAAACCTCTTCCTAACAAACGCGTTTTAAAACCTTGAGGGGAAGCCCTTGAAGGGAAAGCTTAAAGAGGACAATATCTGCTAACGGTGTACTTGGGTTGTTACAATTATAGACTCATGGTTTCATTTTGCTCGAAGCGTTTGGTTGACTGATGTTATCTCGTTTTTGCTCTTGGTGTGCAACACACACATACTTTTAGAAGAAAAAGATGCAAAAGCACCCAATCTTTCTGAGAGAGCGGAAGAAGAGATAGAGGCTGTAGGCCACCATAATGAATCACCACACCATCACAAAGAAACACATGGAAGAAGTGATGATATTGATGAGACTACGCCCGCTGAAGAAGTAAAGGCCCCCGGAGTGTTTGGGAGAGTCAAGGAAGAGATTGAGGCCGTAGTGGGAGAAATTCTTCCCAAGAAGGATTCTGGCGATCATTAG

mRNA sequence

TGTGTATACCGTCAGTTTCGTCGTAAACGGGGGAAGGGATGGTCCAGCGAGCGGACAGAAGAGCGAGGCCGGGTTAATCAATCCCAAGGAAAATCTCGAATGGCGGATCAAAAGACTGAGATCAAAGATTCTTCCTCAGAAGAGATAGAGGCTGTAGGCCACCATAATGAATCACCACACCATCACAAAGAAACACATGGAAGAAGTGATGATATTGATGAGACTACGCCCGCTGAAGAAGTAAAGGCCCCCGGAGTGTTTGGGAGAGTCAAGGAAGAGATTGAGGCCGTAGTGGGAGAAATTCTTCCCAAGAAGGATTCTGGCGATCATTAG

Coding sequence (CDS)

ATGGCGGATCAAAAGACTGAGATCAAAGATTCTTCCTCAGAAGAGATAGAGGCTGTAGGCCACCATAATGAATCACCACACCATCACAAAGAAACACATGGAAGAAGTGATGATATTGATGAGACTACGCCCGCTGAAGAAGTAAAGGCCCCCGGAGTGTTTGGGAGAGTCAAGGAAGAGATTGAGGCCGTAGTGGGAGAAATTCTTCCCAAGAAGGATTCTGGCGATCATTAG

Protein sequence

MADQKTEIKDSSSEEIEAVGHHNESPHHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

Homology

[Close]

BLAST of Carg09453 vs. NCBI nr
Match: KAG7014009.1 (hypothetical protein SDJN02_24180 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MADQKTEIKDSSSEEIEAVGHHNESPHHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEE 60
          MADQKTEIKDSSSEEIEAVGHHNESPHHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEE
Sbjct: 1  MADQKTEIKDSSSEEIEAVGHHNESPHHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEE 60

Query: 61 IEAVVGEILPKKDSGDH 78
          IEAVVGEILPKKDSGDH
Sbjct: 61 IEAVVGEILPKKDSGDH 77

[Close]

BLAST of Carg09453 vs. NCBI nr
Match: KAG6575466.1 (hypothetical protein SDJN03_26105, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 6.8e-31
Identity = 77/92 (83.70%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MADQKTEIKDSSS---------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPA 60
          MADQKTEIKDSSS               EEIEAVGHHNESPHHHKETHGRSDDIDETTPA
Sbjct: 1  MADQKTEIKDSSSEEKDAKAPNLSERAEEEIEAVGHHNESPHHHKETHGRSDDIDETTPA 60

Query: 61 EEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          EEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Sbjct: 61 EEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 92

[Close]

BLAST of Carg09453 vs. NCBI nr
Match: XP_022953833.1 (uncharacterized protein LOC111456247 isoform X2 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 7.5e-30
Identity = 75/91 (82.42%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MADQKTEIKDSSS--------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPAE 60
          MADQKTEIKDSSS              EEIEAVGHH ESPHHHKETHGRSDDIDETTPA+
Sbjct: 1  MADQKTEIKDSSSEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAK 60

Query: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Sbjct: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 91

[Close]

BLAST of Carg09453 vs. NCBI nr
Match: XP_022953832.1 (uncharacterized protein LOC111456247 isoform X1 [Cucurbita moschata])

HSP 1 Score: 139.8 bits (351), Expect = 9.8e-30
Identity = 75/92 (81.52%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MADQKTEIKDSSS---------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPA 60
          MADQKTEIKDSSS               EEIEAVGHH ESPHHHKETHGRSDDIDETTPA
Sbjct: 1  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPA 60

Query: 61 EEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          +EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Sbjct: 61 KEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 92

[Close]

BLAST of Carg09453 vs. NCBI nr
Match: XP_022992453.1 (uncharacterized protein LOC111488752 isoform X2 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 72/91 (79.12%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1  MADQKTEIKDSSS--------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPAE 60
          M D KT IKDSSS              EEIEAV HHNESPHHHKETHGRSDDIDETTPAE
Sbjct: 1  MEDPKTVIKDSSSEKDAKAPNLSERAEEEIEAVAHHNESPHHHKETHGRSDDIDETTPAE 60

Query: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          EVKAPGVFGRVKEEIEAVVGEILPKKDSG+H
Sbjct: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGNH 91

[Close]

BLAST of Carg09453 vs. ExPASy TrEMBL
Match: A0A6J1GPE2 (uncharacterized protein LOC111456247 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456247 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.6e-30
Identity = 75/91 (82.42%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MADQKTEIKDSSS--------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPAE 60
          MADQKTEIKDSSS              EEIEAVGHH ESPHHHKETHGRSDDIDETTPA+
Sbjct: 1  MADQKTEIKDSSSEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAK 60

Query: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Sbjct: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 91

[Close]

BLAST of Carg09453 vs. ExPASy TrEMBL
Match: A0A6J1GPD0 (uncharacterized protein LOC111456247 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456247 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-30
Identity = 75/92 (81.52%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MADQKTEIKDSSS---------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPA 60
          MADQKTEIKDSSS               EEIEAVGHH ESPHHHKETHGRSDDIDETTPA
Sbjct: 1  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPA 60

Query: 61 EEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          +EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Sbjct: 61 KEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 92

[Close]

BLAST of Carg09453 vs. ExPASy TrEMBL
Match: A0A6J1JZ89 (uncharacterized protein LOC111488752 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488752 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.8e-28
Identity = 72/91 (79.12%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1  MADQKTEIKDSSS--------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPAE 60
          M D KT IKDSSS              EEIEAV HHNESPHHHKETHGRSDDIDETTPAE
Sbjct: 1  MEDPKTVIKDSSSEKDAKAPNLSERAEEEIEAVAHHNESPHHHKETHGRSDDIDETTPAE 60

Query: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          EVKAPGVFGRVKEEIEAVVGEILPKKDSG+H
Sbjct: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGNH 91

[Close]

BLAST of Carg09453 vs. ExPASy TrEMBL
Match: A0A6J1JPV5 (uncharacterized protein LOC111488752 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488752 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.6e-28
Identity = 72/92 (78.26%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MADQKTEIKDSSS---------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPA 60
          M D KT IKDSSS               EEIEAV HHNESPHHHKETHGRSDDIDETTPA
Sbjct: 1  MEDPKTVIKDSSSEEKDAKAPNLSERAEEEIEAVAHHNESPHHHKETHGRSDDIDETTPA 60

Query: 61 EEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          EEVKAPGVFGRVKEEIEAVVGEILPKKDSG+H
Sbjct: 61 EEVKAPGVFGRVKEEIEAVVGEILPKKDSGNH 92

[Close]

BLAST of Carg09453 vs. ExPASy TrEMBL
Match: A0A0A0KAY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450740 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.7e-22
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1  MADQKTEIKDSSS--------------EEIEAVGHHNESPHHHKETHGRSDDIDETTPAE 60
          M + KTEIK SSS              EEIEAV H N+SP HHKETHGRSDDIDETTPA+
Sbjct: 1  MEESKTEIKGSSSEREPKSPNIFERAKEEIEAVIHCNKSPRHHKETHGRSDDIDETTPAD 60

Query: 61 EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH 78
          EVKAPGVFGRVKEE+EA+VG I PKKDSG H
Sbjct: 61 EVKAPGVFGRVKEEVEALVGAIHPKKDSGSH 91

[Close]

BLAST of Carg09453 vs. TAIR 10
Match: AT1G72690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 7.2e-15
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 14 EEIEAVGHH--NESPHHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEEIEAVVGEILPK 73
          EEIEA+GHH  ++S HH KETHG SDDIDE+TP + VK PG F R+KEEIEA+   + PK
Sbjct: 23 EEIEAMGHHEKSKSRHHDKETHGTSDDIDESTPIDYVKGPGFFQRLKEEIEAIFNAVTPK 82

Query: 74 KDS 75
          + S
Sbjct: 83 RSS 85

[Close]

BLAST of Carg09453 vs. TAIR 10
Match: AT5G57000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-12
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 27  HHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEEIEAVVGEILPKKDSGD 77
           HHHKETHGRSDDI E TP +EVKAP V  R KEEIEAV+  I  KK   D
Sbjct: 97  HHHKETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKEKD 146

[Close]

BLAST of Carg09453 vs. TAIR 10
Match: AT5G57000.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-12
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 27  HHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEEIEAVVGEILPKKDSGD 77
           HHHKETHGRSDDI E TP +EVKAP V  R KEEIEAV+  I  KK   D
Sbjct: 96  HHHKETHGRSDDISENTPVDEVKAPNVLERAKEEIEAVIDTIHSKKKEKD 145

[Close]

BLAST of Carg09453 vs. TAIR 10
Match: AT1G17490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 57 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-10
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1  MADQKTEIKDSSSEEIEAVGHHNESPHHHKETHGRSDDIDETTPAEEVKAPGVFGRVKEE 60
          +++ KT +  S  EE        ES  H KETHGRS+DIDE T  ++VK PGV GR+ EE
Sbjct: 9  LSEVKTNVIGSRKEE-------KESMFHGKETHGRSEDIDEKTRVDDVKGPGVLGRMMEE 68

Query: 61 IEAVVGEILPKKDS 75
          +EA+V  + P K S
Sbjct: 69 MEAIVDAVTPNKSS 75

The following BLAST results are available for this feature:

BLAST of Carg09453 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014009.1	6.5e-34	100.00	hypothetical protein SDJN02_24180 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6575466.1	6.8e-31	83.70	hypothetical protein SDJN03_26105, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953833.1	7.5e-30	82.42	uncharacterized protein LOC111456247 isoform X2 [Cucurbita moschata]	[more]
XP_022953832.1	9.8e-30	81.52	uncharacterized protein LOC111456247 isoform X1 [Cucurbita moschata]	[more]
XP_022992453.1	1.2e-27	79.12	uncharacterized protein LOC111488752 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg09453 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09453 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPE2	3.6e-30	82.42	uncharacterized protein LOC111456247 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GPD0	4.7e-30	81.52	uncharacterized protein LOC111456247 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JZ89	5.8e-28	79.12	uncharacterized protein LOC111488752 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JPV5	7.6e-28	78.26	uncharacterized protein LOC111488752 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KAY9	4.7e-22	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450740 PE=4 SV=1	[more]

BLAST of Carg09453 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72690.1	7.2e-15	61.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G57000.1	2.6e-12	68.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G57000.2	2.6e-12	68.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G17490.1	2.4e-10	47.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR35277	OS09G0363700 PROTEIN	coord: 5..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09453-RA	Carg09453-RA	mRNA