Carg09430 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09430
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription initiation factor TFIID subunit 9
Location	Carg_Chr17: 6065253 .. 6066946 (-)
RNA-Seq Expression	Carg09430
Synteny	Carg09430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAGTGAAACTCAAATTACAAGAATTGTTAGGGCGAGGAATCAAGACGATGAGTCGTGGAAGTGGAGGTGGAGGTGGATATGACAACCAAAACACTAATTTCTCGCCCGAAGCTCGACCTTCTCAACTGGGTACGTTGCTGTTTATCTTCTTTCCGTTCATGATTCCTCCATCGAGTTCCTACTTTTTTTTCTTTTCCACTTTCATTCAATTGTTTCTGGATGATTTCTCAAACGATTTTAGGGCATTTAATTTTACGGGTCGAATTTGTTCGTCATTTGATTGTTATTTTGATTTGACTCTTGAAACAAAATCGTAGCATGTAATTTAGAAATTTCGTTTTCTCGCGTCACTTGGATGTTTGAAGTTGGGAGAAATTAGGTTGGAAAAGTGGGAATAGTGTGAAATTTTAAGTTTGAGAAGCCAATTTGTTGTCGTTCTCTGTTTATCTTCAAGCTTCAAGATTGAACTATGGATTTCAAAATCAATTTCGAAAGACATTGAATTCATCTCTAGAGTATGCTGTATCTGAAAGTTGCTGGAATTATCATACCGGAGATGAAATCATCCTATTGGATCACTGAACTGTTTATTTTGTTCACGTTGTTACTTAAACAATCAAACGATGAGAAAAGAGCAAAACATAAGTACAAAGCATATGAAAGTCTAGGAACTTATAATTGTTATTGCCTTCTTCAAATAATGCTCTACTTCATAATTATCAAACGTGCAATGTAAAACAAGCTGGTTATGTTTGATAGAATATCAGTTTAGCAGATTGCAAGAATGATTTAAATCTCTTGTGCAGGTGACAGGGGCGTTAAGGAGATGTCTGAGGGAGACGAGGACCTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCCCGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTACGTCGTTGACGTATTGACGGATGCGCAAGTATACTCGGAGCATGCTGGCAAGGCTGCTATCGACTGTGATGATGTGAAGCTTGCAATCCAGTCCAAAGTTAATTTCAGCTTCTCTCAACCTCCTCCAAGAGAGGTAAGATTGCTTAATAGTCCCATTGGAAGCTTGAAGTATCTGCATGGGAAAGAAATGTAGTCTCGAATAAAGAGATTTAGTGTAACGGCCTAATCCTCTTTGGGCTTTCCCTTTCGGGTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACTCTTATAAAGAATGTTTCATTCTCCTCCCCAACCGAGGTTACGATCTACGATCTCACATTCTCACATTTAGATGGGAGTAATACTAGATCATATTCATGGATTTTTGCTATCTTCTCTCCTATTTTAGGAAAAGTGTTTTAACCATGTGTCTCTTTTTTGTTAGGTTCTTCTAGAGTTGGCTAGAAACCGGAATAAAATTCCATTGCCAAGGTCAATTGGCGGGCCTGGTATCGCGCTCCCACCCGATCAAGATACATTGCTCAGTCCCAACTATCAACTGGCAATCCCGAGGAAGCGACAAGTCGAAGCCATGGAGGAAACAGAGGAGGACGAAGGTGTCGATGCAGTTCCATCCCAAGAACTCAGCACAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCTTTGTCTAAACGTCCAAAAATAACATAG

mRNA sequence

TTTGAGTGAAACTCAAATTACAAGAATTGTTAGGGCGAGGAATCAAGACGATGAGTCGTGGAAGTGGAGGTGGAGGTGGATATGACAACCAAAACACTAATTTCTCGCCCGAAGCTCGACCTTCTCAACTGGGTGACAGGGGCGTTAAGGAGATGTCTGAGGGAGACGAGGACCTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCCCGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTACGTCGTTGACGTATTGACGGATGCGCAAGTATACTCGGAGCATGCTGGCAAGGCTGCTATCGACTGTGATGATGTGAAGCTTGCAATCCAGTCCAAAGTTAATTTCAGCTTCTCTCAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCTAGAAACCGGAATAAAATTCCATTGCCAAGGTCAATTGGCGGGCCTGGTATCGCGCTCCCACCCGATCAAGATACATTGCTCAGTCCCAACTATCAACTGGCAATCCCGAGGAAGCGACAAGTCGAAGCCATGGAGGAAACAGAGGAGGACGAAGGTGTCGATGCAGTTCCATCCCAAGAACTCAGCACAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCTTTGTCTAAACGTCCAAAAATAACATAG

Coding sequence (CDS)

ATGAGTCGTGGAAGTGGAGGTGGAGGTGGATATGACAACCAAAACACTAATTTCTCGCCCGAAGCTCGACCTTCTCAACTGGGTGACAGGGGCGTTAAGGAGATGTCTGAGGGAGACGAGGACCTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCCCGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTACGTCGTTGACGTATTGACGGATGCGCAAGTATACTCGGAGCATGCTGGCAAGGCTGCTATCGACTGTGATGATGTGAAGCTTGCAATCCAGTCCAAAGTTAATTTCAGCTTCTCTCAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCTAGAAACCGGAATAAAATTCCATTGCCAAGGTCAATTGGCGGGCCTGGTATCGCGCTCCCACCCGATCAAGATACATTGCTCAGTCCCAACTATCAACTGGCAATCCCGAGGAAGCGACAAGTCGAAGCCATGGAGGAAACAGAGGAGGACGAAGGTGTCGATGCAGTTCCATCCCAAGAACTCAGCACAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCTTTGTCTAAACGTCCAAAAATAACATAG

Protein sequence

MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT

Homology

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BLAST of Carg09430 vs. NCBI nr
Match: KAG7013987.1 (Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 417.2 bits (1071), Expect = 8.7e-113
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED 60
           MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED
Sbjct: 1   MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED 60

Query: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120
           YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE
Sbjct: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120

Query: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD 180
           VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD
Sbjct: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD 180

Query: 181 AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
           AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 211

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BLAST of Carg09430 vs. NCBI nr
Match: KAG6575445.1 (Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.4 bits (1056), Expect = 4.8e-111
Identity = 211/215 (98.14%), Postives = 211/215 (98.14%), Query Frame = 0


Query: 1   MSRGS----GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSM 60
           MSRGS    GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSM
Sbjct: 1   MSRGSGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSM 60

Query: 61  GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP 120
           GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP
Sbjct: 61  GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP 120

Query: 121 PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEED 180
           PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEED
Sbjct: 121 PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEED 180

Query: 181 EGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
           EGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 EGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 215

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BLAST of Carg09430 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 407.9 bits (1047), Expect = 5.3e-110
Identity = 210/217 (96.77%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 1   MSRGS------GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLK 60
           MSRGS      GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLK
Sbjct: 1   MSRGSGGGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLK 60

Query: 61  SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFS 120
           SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFS
Sbjct: 61  SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFS 120

Query: 121 QPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETE 180
           QPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETE
Sbjct: 121 QPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETE 180

Query: 181 EDEGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
           EDEGVDAVPSQE STEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 EDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 217

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BLAST of Carg09430 vs. NCBI nr
Match: XP_022992393.1 (transcription initiation factor TFIID subunit 9 [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 4.2e-107
Identity = 204/213 (95.77%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MSR--GSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGV 60
           MSR  G GGGGGYDNQNTNFSPEAR SQLGDRGVKEMSEGDEDLPRDA+IVKTLLKSMGV
Sbjct: 1   MSRGGGGGGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGV 60

Query: 61  EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPP 120
           EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPP
Sbjct: 61  EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPP 120

Query: 121 REVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEG 180
           REVLLELARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIP+KR VEAMEETEEDEG
Sbjct: 121 REVLLELARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEG 180

Query: 181 VDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
           VD VPSQELSTEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 VDTVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 213

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BLAST of Carg09430 vs. NCBI nr
Match: XP_022144675.1 (transcription initiation factor TFIID subunit 9 [Momordica charantia])

HSP 1 Score: 359.8 bits (922), Expect = 1.6e-95
Identity = 185/211 (87.68%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 1   MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED 60
           MSRG+  GGGYDNQNTNFSPEARPSQLG+RG KE++EGDEDLPRDA+IVK LLKSMGVED
Sbjct: 1   MSRGT--GGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVED 60

Query: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120
           YEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE
Sbjct: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120

Query: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD 180
           VLLELARNRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIP+K+ VE MEETEE+E VD
Sbjct: 121 VLLELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVD 180

Query: 181 AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
              SQE STEVP QHTPQRVSFPL+KRPKIT
Sbjct: 181 FASSQEPSTEVP-QHTPQRVSFPLAKRPKIT 208

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BLAST of Carg09430 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-68
Identity = 134/181 (74.03%), Postives = 152/181 (83.98%), Query Frame = 0


Query: 37  EGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 96
           EG+ED+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 97  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 156
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 157 YQLAIPRKRQVEAMEETEEDEGV--------DAVPSQELSTEVPQQHTPQRVSFPLSKRP 210
           YQL IP+K      EETE+DE +        +    Q+ ++++P Q TPQRVSFPLS+RP
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

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BLAST of Carg09430 vs. ExPASy Swiss-Prot
Match: Q16594 (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-30
Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 40  EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 99
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 100 DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 159
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 160 -AIPRKRQVEAMEETEEDEGVDAVPSQELSTEVPQQHTPQRVS 202
            ++ +K    A   T     V +V S+  ST      TPQ +S
Sbjct: 130 KSLQKKASTSAGRITVPRLSVGSVTSRP-STPTLGTPTPQTMS 171

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BLAST of Carg09430 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.6e-30
Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 40  EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 99
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 100 DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 159
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 160 -AIPRKRQVEAMEETEEDEGVDAVPSQELSTEVPQQHTPQRVS 202
            ++ +K    A   T     V +V S+  ST      TPQ +S
Sbjct: 130 KSLQKKAPAPAGRITVPRLSVGSVSSRP-STPTLGTPTPQTMS 171

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BLAST of Carg09430 vs. ExPASy Swiss-Prot
Match: Q62880 (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 GN=Taf9b PE=2 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 61/120 (50.83%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 40  EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 99
           ++ PRDA ++  +LK MG+ DYEPRVI+Q LE  +RYV  +L DA++YS HA K  +D D
Sbjct: 10  KNAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 100 DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 159
           DV+LAIQ + + SF+ PPPR+ LL++AR +N+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

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BLAST of Carg09430 vs. ExPASy Swiss-Prot
Match: Q17QQ4 (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 72/163 (44.17%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 40  EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 99
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 100 DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 159
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 160 -AIPRKRQVEAMEETEEDEGVDAVPSQELSTEVPQQHTPQRVS 202
            ++ +K    A   T     V +V S+  ST      TP  +S
Sbjct: 130 KSLQKKASASAGRITVPRLSVGSVTSRP-STPTLGTPTPPAMS 171

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BLAST of Carg09430 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.6e-110
Identity = 210/217 (96.77%), Postives = 210/217 (96.77%), Query Frame = 0


Query: 1   MSRGS------GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLK 60
           MSRGS      GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLK
Sbjct: 1   MSRGSGGGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLK 60

Query: 61  SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFS 120
           SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFS
Sbjct: 61  SMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFS 120

Query: 121 QPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETE 180
           QPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETE
Sbjct: 121 QPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETE 180

Query: 181 EDEGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
           EDEGVDAVPSQE STEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 EDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Carg09430 vs. ExPASy TrEMBL
Match: A0A6J1JZ27 (transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111488713 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.0e-107
Identity = 204/213 (95.77%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MSR--GSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGV 60
           MSR  G GGGGGYDNQNTNFSPEAR SQLGDRGVKEMSEGDEDLPRDA+IVKTLLKSMGV
Sbjct: 1   MSRGGGGGGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGV 60

Query: 61  EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPP 120
           EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPP
Sbjct: 61  EDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPP 120

Query: 121 REVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEG 180
           REVLLELARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIP+KR VEAMEETEEDEG
Sbjct: 121 REVLLELARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEG 180

Query: 181 VDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
           VD VPSQELSTEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 VDTVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 213

[Close]

BLAST of Carg09430 vs. ExPASy TrEMBL
Match: A0A6J1CSB1 (transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 GN=LOC111014303 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 8.0e-96
Identity = 185/211 (87.68%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 1   MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED 60
           MSRG+  GGGYDNQNTNFSPEARPSQLG+RG KE++EGDEDLPRDA+IVK LLKSMGVED
Sbjct: 1   MSRGT--GGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVED 60

Query: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120
           YEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE
Sbjct: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120

Query: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD 180
           VLLELARNRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIP+K+ VE MEETEE+E VD
Sbjct: 121 VLLELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVD 180

Query: 181 AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 212
              SQE STEVP QHTPQRVSFPL+KRPKIT
Sbjct: 181 FASSQEPSTEVP-QHTPQRVSFPLAKRPKIT 208

[Close]

BLAST of Carg09430 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.8e-85
Identity = 166/181 (91.71%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 33  KEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG 92
           KEMS+GDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG
Sbjct: 18  KEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG 77

Query: 93  KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL 152
           KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL
Sbjct: 78  KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL 137

Query: 153 LSPNYQLAIPRKRQVEAMEETEEDEGVD-AVPSQE-LSTEVPQQHTPQRVSFPLSKRPKI 212
           LSPNYQLAIP+K+ VE MEETEEDEG D  VPSQE  S+EVPQQH PQRVSFPL+KRPK+
Sbjct: 138 LSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKL 197

[Close]

BLAST of Carg09430 vs. ExPASy TrEMBL
Match: A0A1S3CGN5 (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.1e-84
Identity = 164/179 (91.62%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 35  MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 94
           MS+GDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 95  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 154
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 155 PNYQLAIPRKRQVEAMEETEEDEGVD-AVPSQE-LSTEVPQQHTPQRVSFPLSKRPKIT 212
           PNYQLAIP+K+ VE MEETEEDEG D  VPSQE  S+EVPQQH PQRVSFPL+KRPK+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Carg09430 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 260.8 bits (665), Expect = 9.7e-70
Identity = 134/181 (74.03%), Postives = 152/181 (83.98%), Query Frame = 0


Query: 37  EGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 96
           EG+ED+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 97  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 156
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 157 YQLAIPRKRQVEAMEETEEDEGV--------DAVPSQELSTEVPQQHTPQRVSFPLSKRP 210
           YQL IP+K      EETE+DE +        +    Q+ ++++P Q TPQRVSFPLS+RP
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

The following BLAST results are available for this feature:

BLAST of Carg09430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013987.1	8.7e-113	100.00	Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. a...	[more]
KAG6575445.1	4.8e-111	98.14	Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma...	[more]
XP_022953465.1	5.3e-110	96.77	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]
XP_022992393.1	4.2e-107	95.77	transcription initiation factor TFIID subunit 9 [Cucurbita maxima]	[more]
XP_022144675.1	1.6e-95	87.68	transcription initiation factor TFIID subunit 9 [Momordica charantia]	[more]

BLAST of Carg09430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYH2	1.4e-68	74.03	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q16594	5.6e-30	44.79	Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 ...	[more]
Q8VI33	9.6e-30	44.79	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
Q62880	1.6e-29	50.83	Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 G...	[more]
Q17QQ4	2.8e-29	44.17	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]

BLAST of Carg09430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPP8	2.6e-110	96.77	transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JZ27	2.0e-107	95.77	transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CSB1	8.0e-96	87.68	transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 G...	[more]
A0A1S4E4D8	2.8e-85	91.71	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S3CGN5	4.1e-84	91.62	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of Carg09430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54140.1	9.7e-70	74.03	TATA binding protein associated factor 21kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 40..159 e-value: 1.2E-46 score: 157.8
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 43..159 e-value: 9.6663E-66 score: 196.299
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 43..110 e-value: 1.4E-30 score: 107.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 43..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR48068	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	coord: 34..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09430-RA	Carg09430-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043966	histone H3 acetylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity