Carg09068 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09068
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Bifunctional lysine-specific demethylase and histidyl-hydroxylase
Location	Carg_Chr11: 1747980 .. 1749047 (-)
RNA-Seq Expression	Carg09068
Synteny	Carg09068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGCCGAGGAAGCTTTGTAGCCCATACCCATATCTCTTCTTCCAAAACCTAACGAAAGAGACGATCCAAATCCCAATCCAACTTCAATGTCATTACCACTCTCTATCTCTTCTTCTCGCCGCCGTTTCCATCCCTCCAGAGTAACCCATCTCTTTCTATGCGTTTACCTGCCCTTGGATTTAACTCTTTCGTTGGTTCTTGATTTTGACTGTCTTTGTTTTTCCATTTCAGGCGCACAGGCATCGCTTCTCGTTCGATCATATCGCTCTGTATGAATGAACTGATTGCTTCGAATGATGCGGTTGTGAGAGATTTGATCGCGACCTTTGCGTATTCGAAGAGAAGAGTTGCGTTGGCTGCTTGTAATGCTGTTATGGATTTGTCCACCGCGTTGTTTGGGCGGCGGAGGTTGGTAGAGGTCTCTCCCATTGAGTGTCTTATGTAAGTTTTTATAGATATCGACTCTAATTCTGGATTTCCTTTTTAATTTGTCTCGTATGGTGAAATCGGTTTAACTATGAACTTAATTATGTTCTTGATTTTGCTCTTGTACTCTGTATTTTTGCAATTCCAAACGAAAAGGATATGACTGAAAGAACTTTGTGATTAATACGACATACAATTCGGTGGTGTGATGGTTTGTGCAACGAATGATAGTTGAATCAATCTAACATCTATACAAGCTCAGGGTATTTTCTTGGATATCTGGACTTAATATCTACTAGATCTGCGTTTATGCAGGCTTAAAGTTAAGTTATGCATGAAAATGTGAAGAAATTTTTAAACAAGGTTATACAATTGATCTGTGTAGCATGGAATTTCTGTATAAGAAGATTTTCAAATGCTATAGCATCTCTGTTTGGTCAACCATCTGTAGGTACTGATATGCACTTGACACCTCCAGGTTCTCTGGGTTTGGCTAGTCAATATGGTGATCATTGTGTGTTTGTATTGCCGTCAGATATTGTCCGTTACGTATCGCCGTCAGCCTCACGGTTAAAAGACGCATTTGTTAGGGAGAGGTTTCCACACACTTATAAGGAATGTTTTGTTCTCCTCTCC

mRNA sequence

ATGGAGGCGCCGAGGAAGCTTTGTAGCCCATACCCATATCTCTTCTTCCAAAACCTAACGAAAGAGACGATCCAAATCCCAATCCAACTTCAATGTCATTACCACTCTCTATCTCTTCTTCTCGCCGCCGTTTCCATCCCTCCAGAGCGCACAGGCATCGCTTCTCGTTCGATCATATCGCTCTGTATGAATGAACTGATTGCTTCGAATGATGCGGTTGTGAGAGATTTGATCGCGACCTTTGCGTATTCGAAGAGAAGAGTTGCGTTGGCTGCTTGTAATGCTGTTATGGATTTGTCCACCGCGTTGTTTGGGCGGCGGAGGTTGGTAGAGGTCTCTCCCATTGAGTGTCTTATGTAAGTTTTTATAGATATCGACTCTAATTCTGGATTTCCTTTTTAATTTGTCTCGTATGGTGAAATCGGTTTAACTATGAACTTAATTATGTTCTTGATTTTGCTCTTGTACTCTGTATTTTTGCAATTCCAAACGAAAAGGATATGACTGAAAGAACTTTGTGATTAATACGACATACAATTCGGTGGTGTGATGGTTTGTGCAACGAATGATAGTTGAATCAATCTAACATCTATACAAGCTCAGGGTATTTTCTTGGATATCTGGACTTAATATCTACTAGATCTGCGTTTATGCAGGCTTAAAGTTAAGTTATGCATGAAAATGTGAAGAAATTTTTAAACAAGGTTATACAATTGATCTGTGTAGCATGGAATTTCTGTATAAGAAGATTTTCAAATGCTATAGCATCTCTGTTTGGTCAACCATCTGTAGGTACTGATATGCACTTGACACCTCCAGGTTCTCTGGGTTTGGCTAGTCAATATGGTGATCATTGTGTGTTTGTATTGCCGTCAGATATTGTCCGTTACGTATCGCCGTCAGCCTCACGGTTAAAAGACGCATTTGTTAGGGAGAGGTTTCCACACACTTATAAGGAATGTTTTGTTCTCCTCTCC

Coding sequence (CDS)

ATGGAGGCGCCGAGGAAGCTTTGTAGCCCATACCCATATCTCTTCTTCCAAAACCTAACGAAAGAGACGATCCAAATCCCAATCCAACTTCAATGTCATTACCACTCTCTATCTCTTCTTCTCGCCGCCGTTTCCATCCCTCCAGAGCGCACAGGCATCGCTTCTCGTTCGATCATATCGCTCTGTATGAATGAACTGATTGCTTCGAATGATGCGGTTGTGAGAGATTTGATCGCGACCTTTGCGTATTCGAAGAGAAGAGTTGCGTTGGCTGCTTGTAATGCTGTTATGGATTTGTCCACCGCGTTGTTTGGGCGGCGGAGGTTGGTAGAGGTCTCTCCCATTGAGTGTCTTATGTAA

Protein sequence

MEAPRKLCSPYPYLFFQNLTKETIQIPIQLQCHYHSLSLLLAAVSIPPERTGIASRSIISLCMNELIASNDAVVRDLIATFAYSKRRVALAACNAVMDLSTALFGRRRLVEVSPIECLM

Homology

[Close]

BLAST of Carg09068 vs. NCBI nr
Match: KAG7021683.1 (hypothetical protein SDJN02_15409, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEAPRKLCSPYPYLFFQNLTKETIQIPIQLQCHYHSLSLLLAAVSIPPERTGIASRSIIS 60
           MEAPRKLCSPYPYLFFQNLTKETIQIPIQLQCHYHSLSLLLAAVSIPPERTGIASRSIIS
Sbjct: 1   MEAPRKLCSPYPYLFFQNLTKETIQIPIQLQCHYHSLSLLLAAVSIPPERTGIASRSIIS 60

Query: 61  LCMNELIASNDAVVRDLIATFAYSKRRVALAACNAVMDLSTALFGRRRLVEVSPIECLM 120
           LCMNELIASNDAVVRDLIATFAYSKRRVALAACNAVMDLSTALFGRRRLVEVSPIECLM
Sbjct: 61  LCMNELIASNDAVVRDLIATFAYSKRRVALAACNAVMDLSTALFGRRRLVEVSPIECLM 119

[Close]

BLAST of Carg09068 vs. NCBI nr
Match: KAG6587718.1 (hypothetical protein SDJN03_16283, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MEAPRKLCSPYPYLFFQNLTKETIQIPIQLQCHYHSLSLLLAAVSIPPERTGIASRSIIS 60
           MEAPRKLCSPYPYLFFQNLTKETIQIPIQLQCHYHSLSLLLAAVSIPPERTGIASRSIIS
Sbjct: 1   MEAPRKLCSPYPYLFFQNLTKETIQIPIQLQCHYHSLSLLLAAVSIPPERTGIASRSIIS 60

Query: 61  LCMNELIASNDAVVRDLIATFAYSKRRVALAACNAVMDLSTALFGRRRLVEVSPIECLM 120
           LCMNELIASNDAVVRDLIATFAYSKRRV LAACNAVMDLSTALFGRRRLVEVSPIECLM
Sbjct: 61  LCMNELIASNDAVVRDLIATFAYSKRRVTLAACNAVMDLSTALFGRRRLVEVSPIECLM 119

[Close]

BLAST of Carg09068 vs. NCBI nr
Match: XP_022987328.1 (uncharacterized protein LOC111484915 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-13
Identity = 55/89 (61.80%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIASR--------SIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I  ER GIASR        S++SL MNE+IAS D VVR LI+T A SKRRVAL
Sbjct: 80  LSLLPLLILSERQGIASRAAEIVGAASLLSLRMNEVIASADGVVRALISTLACSKRRVAL 139

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAVMDLST  FGR  LVE S IE L+
Sbjct: 140 AACNAVMDLSTTSFGRESLVEFSAIERLI 168

[Close]

BLAST of Carg09068 vs. NCBI nr
Match: XP_022921349.1 (uncharacterized protein LOC111429646 [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 54/89 (60.67%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIASR--------SIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I  ER GIASR        S++SL MNE+IAS D VVR LI+  A SKRRVAL
Sbjct: 80  LSLLPLLILSERQGIASRAAEIVGAASLLSLRMNEVIASADGVVRALISALACSKRRVAL 139

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAVMDLST  FGR  LVE S IE L+
Sbjct: 140 AACNAVMDLSTTSFGRESLVEFSAIERLI 168

[Close]

BLAST of Carg09068 vs. NCBI nr
Match: KAG6589672.1 (Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-12
Identity = 54/89 (60.67%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIASR--------SIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I  E  GIASR        S++SL MNE+IAS D VVR LI+  A SKRRVAL
Sbjct: 80  LSLLPLLILSELQGIASRAAEIVGAASLLSLRMNEVIASADGVVRALISALACSKRRVAL 139

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAVMDLST  FGR  LVE S IE LM
Sbjct: 140 AACNAVMDLSTTSFGRESLVEFSAIERLM 168

[Close]

BLAST of Carg09068 vs. ExPASy TrEMBL
Match: A0A6J1JJ52 (Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucurbita maxima OX=3661 GN=LOC111484915 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 55/89 (61.80%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIASR--------SIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I  ER GIASR        S++SL MNE+IAS D VVR LI+T A SKRRVAL
Sbjct: 80  LSLLPLLILSERQGIASRAAEIVGAASLLSLRMNEVIASADGVVRALISTLACSKRRVAL 139

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAVMDLST  FGR  LVE S IE L+
Sbjct: 140 AACNAVMDLSTTSFGRESLVEFSAIERLI 168

[Close]

BLAST of Carg09068 vs. ExPASy TrEMBL
Match: A0A6J1E073 (Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucurbita moschata OX=3662 GN=LOC111429646 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 54/89 (60.67%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIASR--------SIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I  ER GIASR        S++SL MNE+IAS D VVR LI+  A SKRRVAL
Sbjct: 80  LSLLPLLILSERQGIASRAAEIVGAASLLSLRMNEVIASADGVVRALISALACSKRRVAL 139

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAVMDLST  FGR  LVE S IE L+
Sbjct: 140 AACNAVMDLSTTSFGRESLVEFSAIERLI 168

[Close]

BLAST of Carg09068 vs. ExPASy TrEMBL
Match: A0A0A0LWZ8 (Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucumis sativus OX=3659 GN=Csa_1G427540 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIAS--------RSIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I  ER GIAS         S++SL MNE+IAS+D +VR LI+    SKRRVAL
Sbjct: 86  LSLLPLLILSERQGIASCAAEIVGAASLLSLRMNEVIASDDGLVRALISVLGCSKRRVAL 145

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAV+DLST  FGR+RLVE S I+ L+
Sbjct: 146 AACNAVLDLSTTSFGRQRLVEFSAIQRLI 174

[Close]

BLAST of Carg09068 vs. ExPASy TrEMBL
Match: A0A6J1C3K1 (Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Momordica charantia OX=3673 GN=LOC111007109 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIASR--------SIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I   R GIASR        S++SL +NE IAS+DAV++ LI+  A S R VAL
Sbjct: 91  LSLLPLLILSRRPGIASRAAEIVGAASLLSLRVNEEIASDDAVLKALISALACSNRTVAL 150

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAV+DLST  FGRR LVEVS IE LM
Sbjct: 151 AACNAVLDLSTTSFGRRSLVEVSAIERLM 179

[Close]

BLAST of Carg09068 vs. ExPASy TrEMBL
Match: A0A5A7UQP6 (Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005120 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 39  LLLAAVSIPPERTGIAS--------RSIISLCMNELIASNDAVVRDLIATFAYSKRRVAL 98
           L L  + I  ER GIAS         S++SL  NE+IA +D VVR LI+    SKRRVAL
Sbjct: 84  LSLLPLLILSERQGIASCAAEIVGAASLLSLRTNEVIALDDGVVRALISVLGCSKRRVAL 143

Query: 99  AACNAVMDLSTALFGRRRLVEVSPIECLM 120
           AACNAV+DLST  FGR+RLVE S I+ L+
Sbjct: 144 AACNAVLDLSTTSFGRQRLVEFSAIQRLI 172

The following BLAST results are available for this feature:

BLAST of Carg09068 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021683.1	1.3e-57	100.00	hypothetical protein SDJN02_15409, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587718.1	3.8e-57	99.16	hypothetical protein SDJN03_16283, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022987328.1	5.8e-13	61.80	uncharacterized protein LOC111484915 [Cucurbita maxima]	[more]
XP_022921349.1	2.2e-12	60.67	uncharacterized protein LOC111429646 [Cucurbita moschata]	[more]
KAG6589672.1	4.9e-12	60.67	Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66, partial ...	[more]

BLAST of Carg09068 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JJ52	2.8e-13	61.80	Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucurbita m...	[more]
A0A6J1E073	1.1e-12	60.67	Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucurbita m...	[more]
A0A0A0LWZ8	1.2e-11	56.18	Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucumis sat...	[more]
A0A6J1C3K1	2.6e-11	57.30	Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Momordica c...	[more]
A0A5A7UQP6	1.3e-10	55.06	Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Cucumis mel...	[more]

BLAST of Carg09068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09068-RA	Carg09068-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0051213	dioxygenase activity