Carg08888 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08888
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr02: 9330145 .. 9330713 (-)
RNA-Seq Expression	Carg08888
Synteny	Carg08888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGTGAGTTTATAAGCGAGGATGAGAAGACCAGCCGCGTGAATGGTTTCACTCGCGATGAACAAGTAATTATGATTCGTAACCGTGTGCTTCAAAACAAACATCGCAGCCACCGCCGCCGCCACCGCAAGACCGATCTTCGCCGCCGTGGATCTCCGCCTCAGCCAATCGCCCGCGGCCTGGAACGCTCTCCTCCTATTCGGACGCCTCTTCGACTCATCGCCGTCGCTCGTGGTCGGAACCCTACCGGAACCGAAACTGATCGGGTAAGAACCTAACGCTTCCATCTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATTGAATCGATGAATCGATTGAGAGAAAAAAAAAAAAGAGAGAACAGAGGCGTTTTTTTTTTGTTAGGGCAAAATTGGGGATGATTTGTGGTGAAATTGATTTGACCATGGATTCAACGCCACTGAAACGGTTACCAAATATGGATGAATGAAGAATGAATTAATTGAAAATCCTTACAGATTTGGTGGATGAAATGGTCCGGATTTGTTCTTAAATGTTGAAAATGCGACGATCTGATGG

mRNA sequence

ATGAGTGGTGAGTTTATAAGCGAGGATGAGAAGACCAGCCGCGTGAATGGTTTCACTCGCGATGAACAAGTAATTATGATTCGTAACCGTGTGCTTCAAAACAAACATCGCAGCCACCGCCGCCGCCACCGCAAGACCGATCTTCGCCGCCGTGGATCTCCGCCTCAGCCAATCGCCCGCGGCCTGGAACGCTCTCCTCCTATTCGGACGCCTCTTCGACTCATCGCCGTCGCTCGTGGTCGGAACCCTACCGGAACCGAAACTGATCGGATTTGGTGGATGAAATGGTCCGGATTTGTTCTTAAATGTTGAAAATGCGACGATCTGATGG

Coding sequence (CDS)

ATGAGTGGTGAGTTTATAAGCGAGGATGAGAAGACCAGCCGCGTGAATGGTTTCACTCGCGATGAACAAGTAATTATGATTCGTAACCGTGTGCTTCAAAACAAACATCGCAGCCACCGCCGCCGCCACCGCAAGACCGATCTTCGCCGCCGTGGATCTCCGCCTCAGCCAATCGCCCGCGGCCTGGAACGCTCTCCTCCTATTCGGACGCCTCTTCGACTCATCGCCGTCGCTCGTGGTCGGAACCCTACCGGAACCGAAACTGATCGGATTTGGTGGATGAAATGGTCCGGATTTGTTCTTAAATGTTGA

Protein sequence

MSGEFISEDEKTSRVNGFTRDEQVIMIRNRVLQNKHRSHRRRHRKTDLRRRGSPPQPIARGLERSPPIRTPLRLIAVARGRNPTGTETDRIWWMKWSGFVLKC

Homology

[Close]

BLAST of Carg08888 vs. NCBI nr
Match: KAG6606303.1 (hypothetical protein SDJN03_03620, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036241.1 hypothetical protein SDJN02_03043, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 7.9e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGEFISEDEKTSRVNGFTRDEQVIMIRNRVLQNKHRSHRRRHRKTDLRRRGSPPQPIAR 60
           MSGEFISEDEKTSRVNGFTRDEQVIMIRNRVLQNKHRSHRRRHRKTDLRRRGSPPQPIAR
Sbjct: 1   MSGEFISEDEKTSRVNGFTRDEQVIMIRNRVLQNKHRSHRRRHRKTDLRRRGSPPQPIAR 60

Query: 61  GLERSPPIRTPLRLIAVARGRNPTGTETDRIWWMKWSGFVLKC 104
           GLERSPPIRTPLRLIAVARGRNPTGTETDRIWWMKWSGFVLKC
Sbjct: 61  GLERSPPIRTPLRLIAVARGRNPTGTETDRIWWMKWSGFVLKC 103

[Close]

BLAST of Carg08888 vs. NCBI nr
Match: KAG6571596.1 (hypothetical protein SDJN03_28324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1  MSGEFISEDEKTSRVNGFTRDEQVIMIRNRVLQNKHRSHRRRHRKTDLRRRGSPPQPIAR 60
          MSGE +SEDEK+  VN  T DE+VIMI N  LQ+  R HRRR R +DLR RGSP QP+ R
Sbjct: 1  MSGELVSEDEKSGSVNDCTGDEEVIMILNSHLQSHQRQHRRRRRNSDLRYRGSPFQPLCR 60

Query: 61 GLERS-PPIRTPLRLIAVARGRNPTGT 87
           L+   PP R  LR IA  R RNPTG+
Sbjct: 61 RLDHPIPPYRAILRFIAAGRDRNPTGS 87

The following BLAST results are available for this feature:

BLAST of Carg08888 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606303.1	7.9e-51	100.00	hypothetical protein SDJN03_03620, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571596.1	2.6e-14	58.62	hypothetical protein SDJN03_28324, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg08888 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08888 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08888 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08888-RA	Carg08888-RA	mRNA