Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTACTTCTCTCTGTCTCTCTCTACGATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCCATCTTCTCCTTTAATTCTCAACTACGACGGACAAGATGACGAGAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTCATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGGTACCTGCAATTCCTCCCATCGGAATCGACAATCGCTCTGTACTTCGCTATAGTTTGATTCTAATTGATCGTTTCAGTTGATATTCTGTTTCAATCGTTTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAACATTTAGGTATAATGTAGTTGATGATTTCGCGAATTGAGGCATTATCTGTTTAATTTCTGAATTTGAATCTCTTCATTTGGTGAATTTCTGGCAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCTGAGATCTCGCACTCCGAGGAAACTCGGCGATTTCTAA
mRNA sequence
TCTCTCTACTTCTCTCTGTCTCTCTCTACGATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCCATCTTCTCCTTTAATTCTCAACTACGACGGACAAGATGACGAGAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTCATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAACATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCTGAGATCTCGCACTCCGAGGAAACTCGGCGATTTCTAA
Coding sequence (CDS)
ATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCCATCTTCTCCTTTAATTCTCAACTACGACGGACAAGATGACGAGAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTCATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAACATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCTGAGATCTCGCACTCCGAGGAAACTCGGCGATTTCTAA
Protein sequence
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Homology
BLAST of Carg08853 vs. NCBI nr
Match:
KAG6606266.1 (hypothetical protein SDJN03_03583, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036207.1 hypothetical protein SDJN02_03008 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 314.7 bits (805), Expect = 4.5e-82
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE
Sbjct: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Sbjct: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 158
BLAST of Carg08853 vs. NCBI nr
Match:
XP_022930990.1 (uncharacterized protein LOC111437318 [Cucurbita moschata])
HSP 1 Score: 313.2 bits (801), Expect = 1.3e-81
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
FPTPSPQRQEKFVHAIPILTI CFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE
Sbjct: 61 FPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Sbjct: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 158
BLAST of Carg08853 vs. NCBI nr
Match:
XP_022995482.1 (uncharacterized protein LOC111491006 [Cucurbita maxima] >XP_023532562.1 uncharacterized protein LOC111794686 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSS LILNYDGQDD+KASKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE
Sbjct: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
LIVPKKGNILAIQSLRNLKEIEKSHSLRSR PRKL DF
Sbjct: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 158
BLAST of Carg08853 vs. NCBI nr
Match:
XP_004136199.1 (uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus])
HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 137/158 (86.71%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSD PADDQKR KHSPSS ILNY GQDD+K+SKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFK PS+ LEIKA+GDE
Sbjct: 61 FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKHPSQQLEIKADGDE 120
Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
LI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKL DF
Sbjct: 121 LILPKKGNILAIQSFRNLKEIEKSYSLKSRPPRKLADF 158
BLAST of Carg08853 vs. NCBI nr
Match:
XP_008466005.1 (PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo] >KAA0038558.1 hypothetical protein E6C27_scaffold92G00860 [Cucumis melo var. makuwa] >TYK31184.1 hypothetical protein E5676_scaffold455G004680 [Cucumis melo var. makuwa])
HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSD PADDQKR KHSPSS ILNY GQDD+K+SKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKA-EGD 120
FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPS+ LEIKA +G
Sbjct: 61 FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLEIKADDGH 120
Query: 121 ELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Sbjct: 121 ELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF 159
BLAST of Carg08853 vs. ExPASy TrEMBL
Match:
A0A6J1EYA9 (uncharacterized protein LOC111437318 OS=Cucurbita moschata OX=3662 GN=LOC111437318 PE=4 SV=1)
HSP 1 Score: 313.2 bits (801), Expect = 6.4e-82
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
FPTPSPQRQEKFVHAIPILTI CFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE
Sbjct: 61 FPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Sbjct: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 158
BLAST of Carg08853 vs. ExPASy TrEMBL
Match:
A0A6J1JZ13 (uncharacterized protein LOC111491006 OS=Cucurbita maxima OX=3661 GN=LOC111491006 PE=4 SV=1)
HSP 1 Score: 306.2 bits (783), Expect = 7.8e-80
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSS LILNYDGQDD+KASKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSSLILNYDGQDDDKASKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE
Sbjct: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
LIVPKKGNILAIQSLRNLKEIEKSHSLRSR PRKL DF
Sbjct: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRAPRKLADF 158
BLAST of Carg08853 vs. ExPASy TrEMBL
Match:
A0A0A0LE94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901050 PE=4 SV=1)
HSP 1 Score: 273.1 bits (697), Expect = 7.4e-70
Identity = 137/158 (86.71%), Postives = 145/158 (91.77%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSD PADDQKR KHSPSS ILNY GQDD+K+SKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKAEGDE 120
FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFK PS+ LEIKA+GDE
Sbjct: 61 FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKHPSQQLEIKADGDE 120
Query: 121 LIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
LI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKL DF
Sbjct: 121 LILPKKGNILAIQSFRNLKEIEKSYSLKSRPPRKLADF 158
BLAST of Carg08853 vs. ExPASy TrEMBL
Match:
A0A5A7T6T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004680 PE=4 SV=1)
HSP 1 Score: 270.0 bits (689), Expect = 6.2e-69
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSD PADDQKR KHSPSS ILNY GQDD+K+SKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKA-EGD 120
FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPS+ LEIKA +G
Sbjct: 61 FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLEIKADDGH 120
Query: 121 ELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Sbjct: 121 ELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF 159
BLAST of Carg08853 vs. ExPASy TrEMBL
Match:
A0A1S3CQJ2 (uncharacterized protein LOC103503567 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503567 PE=4 SV=1)
HSP 1 Score: 270.0 bits (689), Expect = 6.2e-69
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFS 60
MQRQSLGSPVSKLHGHGAGAKSD PADDQKR KHSPSS ILNY GQDD+K+SKSFRFS
Sbjct: 1 MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60
Query: 61 FPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKA-EGD 120
FP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPS+ LEIKA +G
Sbjct: 61 FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLEIKADDGH 120
Query: 121 ELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF 159
ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Sbjct: 121 ELILPKKGNILAIQSFRNLKEIEKSHSLKSRPPRKLADF 159
BLAST of Carg08853 vs. TAIR 10
Match:
AT2G35470.1 (unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 112.5 bits (280), Expect = 3.2e-25
Identity = 80/168 (47.62%), Postives = 102/168 (60.71%), Query Frame = 0
Query: 1 MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSP-SSPLILNYDGQD--DEKASKSF 60
MQR SL S SKLH +G G K D DD K SP SS ++YD + D K +
Sbjct: 1 MQRISLDSSASKLHSYG-GRKDDTYDIDDLKPASSSPSSSSSAVDYDDHELKDFKPRRLS 60
Query: 61 RFSFP-TPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEIKA 120
P + Q+QEK VH IPILT+ICF+ILY+ S++PSQSDLAQF+GF RPS+HLE
Sbjct: 61 SLQSPFVTTNQKQEKLVHFIPILTLICFIILYLTSYAPSQSDLAQFNGFMRPSKHLESSD 120
Query: 121 E-GDELIVPKKGNILAIQ-SLRNLKEIE----KSHSLRSRTPRKLGDF 159
E GDE+ + + L+I+ S+RNL+E E KS R + RK DF
Sbjct: 121 ENGDEISGFIRADTLSIRSSVRNLQETESFTTKSLPRRRTSHRKTADF 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6606266.1 | 4.5e-82 | 100.00 | hypothetical protein SDJN03_03583, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022930990.1 | 1.3e-81 | 99.37 | uncharacterized protein LOC111437318 [Cucurbita moschata] | [more] |
XP_022995482.1 | 1.6e-79 | 97.47 | uncharacterized protein LOC111491006 [Cucurbita maxima] >XP_023532562.1 uncharac... | [more] |
XP_004136199.1 | 1.5e-69 | 86.71 | uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus] | [more] |
XP_008466005.1 | 1.3e-68 | 86.79 | PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo] >KAA00... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1EYA9 | 6.4e-82 | 99.37 | uncharacterized protein LOC111437318 OS=Cucurbita moschata OX=3662 GN=LOC1114373... | [more] |
A0A6J1JZ13 | 7.8e-80 | 97.47 | uncharacterized protein LOC111491006 OS=Cucurbita maxima OX=3661 GN=LOC111491006... | [more] |
A0A0A0LE94 | 7.4e-70 | 86.71 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901050 PE=4 SV=1 | [more] |
A0A5A7T6T2 | 6.2e-69 | 86.79 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CQJ2 | 6.2e-69 | 86.79 | uncharacterized protein LOC103503567 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
Match Name | E-value | Identity | Description | |
AT2G35470.1 | 3.2e-25 | 47.62 | unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bact... | [more] |