Carg08709 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08709
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr09: 604781 .. 608642 (+)
RNA-Seq Expression	Carg08709
Synteny	Carg08709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAATGCGATTCGGCGTGAAGTTTTCGGCCTAAGCTGTCTCTACATGTAAGGTCTCTACCATGCTTTTTGCGATGGTTATTTCTTGAAGCGTACGACATACAGTTGATGATTCTTGTTTATCGCGACGTATGAGTTTGATCGGACGACAATTTTCTTTCAAATCAACTTGGAACTGCGCAGCTTCTCTTCCGAGGTAAGTATGAATCTGTTTTTCCGTTCTTCTACTGTAACTGCGTATAAATCTCTGCGAGTCTGAGTAGATTTAGGTTCCGATTATGTCTATGTTATTGATATTGAACATTGTGTACTTCCGCGAAGTCTATCGTAGTATTACGTGTTGTCTCGTTAATTCTGATAATCGAACTTTCTTGTTCCTTGAACTTGAGAAATTATGGCAATGATATATCATCAAAATAAGAAATCCTGATTTCCGGACTTCAATCGGATTATCGCTTGACTAGTACTGCTACTGTACTTTAGAATACTATAACTTAGAAGAGCAAAACGAGAGAAAAGAAGGTTTGATACAGATCAAAACTGGTTGATCTGTAATGGATTATGTGGAGATGTTTTCCAATGATTGGAACGGGAGAACAAAAACTAGGAGTGAAGAACTTCGGTTGTCCGAAGCGGTAGAAAAGGACGGAGAATTCGAATGAGCCAAAGGTATATCTAGGCCACAGGTGCTCTCTCTTATGAACTATATTTGTCTAGTTGACAAATGTAGCCTCTTATAGTATCTTTCTTTGTTTAATAGGCTAAGTGATCGGCGTAAATTTTAGAGAAAAACTTGCGAAACCTCAATTCATGATCTAAAATAGTACAGAAAAATCGATTTCGGAGATGCGTGTGGCATTTTACAGGAGCAGGGGAATATCATGCACAAACTCTGATTGCATCTGTATGATAAAAATAATTCAGCTCGGTCTATTGCTTGGAAGTTGGAATGACAAGAGAGAAACATCCGTAAATGAGAAATACGAAAGCAGAGATAGACGGAGTTTTAGACTCTTAATTCGAAATGTGAGAATGAAAATCCTAGGTAAAAAAATCTTAGTTGATTTTAAGGGGGGTAACAGTAGCAGCAACTCTATTCTGAGGTCTGGCAGTCGAGTTCCTTGTAACGTTGTCACTCTTCATTGCCTCAACTTTATTCAATAGCTCTTCATTTTATCCAAAGACGGAATGTTGCTGAATTAATAGGTTAGTATCTGAAACCACTGAAGTTGCAGTAAGACATATGTAGGTGCAGATCCATGTGCTCGCGTCTCAACAACGCGGGATCCAACCGGTCCAGGTGGTTCATGGTCGATACCACTATCCGCTCGTCTCCACAGCTCGACCATAGGCCATCAATGAAGTTCAATAACCCATACTGAGTAATCTTATTGCAACAAACAATTTGATAAGTAGCTTCCTTATGTCATGTAGCTTTGGATACAAAATATTTAGTTTCCTTCAGGTCAGGGACCTACCTTTTCATCATCTGCAGATTTGGTTTGATTTTCTGAGTCTGAACTCCTATCTTGAAGCTCAACAGAACAATCAATGTCCTCAATTATTAATATTGAACGGCTCTCTGTGCCAATCAATAATCTGCTTAAATCTGAATTGTATTGGACTTCCCTCAGATCCATATCATAAATCTTAAGCTTCAGATGATTTCCCTGTGCTTGGTGGTCCATACAACAAATAACCACGTTTCCAAGCCTTTCTTACTCTTCTGTAGGACTCTTCCCTCTCATTGAACTTATTGCGATCTTCGATCAATGCCTTCTTAGTTTCAGGGTTCATGGCTGTTGTGTCAAATGTCGCTGGGTGATTGAGGTCGATTGGACCCAGTAATCAGTGCCACTATAATCTGTTGTATGGAGCTTCACGGCCTTTTTTTTTTTTCATCTCTAATGGCATTTGCTTCTCGCGGAAGATGCGGAAGGTAGAATCTTAATGCCATATCCTTGTGTTTCTTGTGAAAGCTTAGCTCGAACTGCCTAACATCTGTCCGCTCATGCGCATTACCATCGTGGTTCTTCGCGCAGAAACCAAAACCCACTTAAAATTGACGCCTTCGAATTTGTCAACCAGTTCTTGATTCCTATCTATGATCAAGGCCAATCGCTGCTCTTTTTCTAGCTTGTGGACCTTAAGTCCTCGCAAGGATGAAGTAAGCTTTGCGCCCAAGTAAACATTTGCAGAGTCAAACATCTGGTTGGCGGTAAGCACATCAAGTTCTTCGACAACGACGATCGACTGTTTGTAAGAGCGCATCGGTTCCTCGCGGCGTACAAGAACGAAGTCCCATGCCCATGGACGGACCTTTTTGGTTTGGGTTTTTTTAGTTTAGAAGTACATGGAGTGACTTTTTGCTCAAGGTTATGGTATCGGCCTTTTGCAACCAGCCTTTTTATTGAGTTGGTTACTAGGGGTTTACGCGGAACTATCCAAGCCCATTTATTTGGAGAGCCCATATATCTGACGATGTGGGTAGGGATGGCCTCAGATCGTGCTTGAAAAACTAAAATCAAGGATTAAGATTATACGGTAGATAGTGTTGGGTCAAAAATGTTACATTTTAAATCATTACCTACATCGATTTCGTTTATGCATTATTAAAGTTCTCTTTCAATACCTCTGTTTTAGTATTAAAGCTTTGTTCTTCCTCGAAAAGTATTATTAAAGCATATTAAACATCTTTATCGTCAATAGTTTGATGAATATAAAAATTCATCATGACAAATTGTTAATATTGGCGGGCCATGCACGGTAACCATTTATTTTGGGAGTCCATTAATCATTGATAGTTGAGTTGAAAATTTTAGTCAAATAGTAATAGAATAACACTTCAATCTTCAATAATCTAGGAAAAACCTATTCTATCCCATTTTACATCTCCCTATTTGTCTAAAGCTTGATAGGGGCTCTGACGAGACACACCAAGTCAAAAGGTAAAAGGTAAGTAGTTATCTTAGTAAGCATAGATCACACTTTAAGAAATTGTTTTTACCGCGGATTGTAATTGAGAGTGAAGAGTAGTTTTGAACATTGAAGTAGTTGAGATTGCCAATGTAGATAGATAAGAAATTACCCATAAATTAAACCCATATCTAATTTCCTACACACATAGTGGAGCTGTAACTATAAGCATCTTTGGTGATAACACATCAGACATCGCACTTGCAACATGTCTTTGGGAGATGACTTATGACATCTTTGCTCTCCTTCTTCCCATCTTTCTTCTCCTCTTTTGCAGGCCCTACACTCAAAATTGCAGCATATTTTCTGAACTTTCTCACCTTCTTGATGACCTTCACAGGATCAGCTTCGCCGATGACAGTGATCGTGTTTTTTGGTGGGATATCGATTTCATCACCTGCTGCTTGCACTACCAACGTGGCAGTTCCACTGACTCTACAGTTTTCTGCAACAACGAATATGTGTCAGGTTTTGAAGTACTTAAAGAGATCAGGTCCTAATGGTAATTCAATATTATTATACACATAAAGAAAACGAAAAAAATGCGGTGGAAAACCTTTGACATGGTTTTGGGAAAAGTGCACGAGTGATTCTACTGACAAACGTGGCAGAGTAGAGTACTTTCGTATGGTTTACAATTCATTTTTCTGTGCAGGAAGGCCGACATAAAGTTTGGTCGAGAACTAAATTCGGTGACATGAAAAATGTTTTTATGTATCCCACCATGCATTTATTGCTGCTGCAGCAATACCCTCCTGCTTATTGGTGAAGTAATTCAAATGGAGGAACAACTTGAGCCGTCTGGTAAGTACAACGTTTTGACGCCTTATCTCACTAAGAAGCTTTACTTTCTATTTTCTAATATGGTCTATTTTAAAATTTTA

mRNA sequence

ATGCAAAATGCGATTCGGCGTGAAGTTTTCGGCCTAAGCTGTCTCTACATCGTACGACATACAGTTGATGATTCTTGTTTATCGCGACGTATGAGTTTGATCGGACGACAATTTTCTTTCAAATCAACTTGGAACTGCGCAGCTTCTCTTCCGAGGCCCTACACTCAAAATTGCAGCATATTTTCTGAACTTTCTCACCTTCTTGATGACCTTCACAGGATCAGCTTCGCCGATGACAGTGATCGTGTTTTTTGGTGGGATATCGATTTCATCACCTGCTGCTTGCACTACCAACGTGGCAGTTCCACTGACTCTACAGTTTTCTGCAACAACGAATATGTGTCAGGAAGGCCGACATAAAGTTTGGTCGAGAACTAAATTCGGTGACATGAAAAATGTTTTTATGTATCCCACCATGCATTTATTGCTGCTGCAGCAATACCCTCCTGCTTATTGGTGAAGTAATTCAAATGGAGGAACAACTTGAGCCGTCTGGTAAGTACAACGTTTTGACGCCTTATCTCACTAAGAAGCTTTACTTTCTATTTTCTAATATGGTCTATTTTAAAATTTTA

Coding sequence (CDS)

ATGCAAAATGCGATTCGGCGTGAAGTTTTCGGCCTAAGCTGTCTCTACATCGTACGACATACAGTTGATGATTCTTGTTTATCGCGACGTATGAGTTTGATCGGACGACAATTTTCTTTCAAATCAACTTGGAACTGCGCAGCTTCTCTTCCGAGGCCCTACACTCAAAATTGCAGCATATTTTCTGAACTTTCTCACCTTCTTGATGACCTTCACAGGATCAGCTTCGCCGATGACAGTGATCGTGTTTTTTGGTGGGATATCGATTTCATCACCTGCTGCTTGCACTACCAACGTGGCAGTTCCACTGACTCTACAGTTTTCTGCAACAACGAATATGTGTCAGGAAGGCCGACATAA

Protein sequence

MQNAIRREVFGLSCLYIVRHTVDDSCLSRRMSLIGRQFSFKSTWNCAASLPRPYTQNCSIFSELSHLLDDLHRISFADDSDRVFWWDIDFITCCLHYQRGSSTDSTVFCNNEYVSGRPT

Homology

[Close]

BLAST of Carg08709 vs. NCBI nr
Match: KAG7024184.1 (hypothetical protein SDJN02_12998, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.0e-65
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MQNAIRREVFGLSCLYIVRHTVDDSCLSRRMSLIGRQFSFKSTWNCAASLPRPYTQNCSI 60
           MQNAIRREVFGLSCLYIVRHTVDDSCLSRRMSLIGRQFSFKSTWNCAASLPRPYTQNCSI
Sbjct: 1   MQNAIRREVFGLSCLYIVRHTVDDSCLSRRMSLIGRQFSFKSTWNCAASLPRPYTQNCSI 60

Query: 61  FSELSHLLDDLHRISFADDSDRVFWWDIDFITCCLHYQRGSSTDSTVFCNNEYVSGRPT 120
           FSELSHLLDDLHRISFADDSDRVFWWDIDFITCCLHYQRGSSTDSTVFCNNEYVSGRPT
Sbjct: 61  FSELSHLLDDLHRISFADDSDRVFWWDIDFITCCLHYQRGSSTDSTVFCNNEYVSGRPT 119

[Close]

BLAST of Carg08709 vs. NCBI nr
Match: KAG6591299.1 (Bifunctional nuclease 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 78/99 (78.79%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 18  VRHTVDDSCLSRRMSLIGRQFSFKSTWNCAASLPRPYTQNCSIFSELSHLLDDLHRISFA 77
           VRHTVDDSCLSRRMSLIGRQFSFKSTWNCAASLP                     RISFA
Sbjct: 328 VRHTVDDSCLSRRMSLIGRQFSFKSTWNCAASLP---------------------RISFA 387

Query: 78  DDSDRVFWWDIDFITCCLHYQRGSSTDSTVFCNNEYVSG 117
           DDSDRVFWWDIDFITCCLHYQRGSSTDSTVFCNNEYVSG
Sbjct: 388 DDSDRVFWWDIDFITCCLHYQRGSSTDSTVFCNNEYVSG 405

The following BLAST results are available for this feature:

BLAST of Carg08709 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024184.1	5.0e-65	100.00	hypothetical protein SDJN02_12998, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591299.1	1.4e-35	78.79	Bifunctional nuclease 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg08709 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08709 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg08709 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08709-RA	Carg08709-RA	mRNA