Carg08408 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08408
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L36
Location	Carg_Chr02: 5889279 .. 5890440 (-)
RNA-Seq Expression	Carg08408
Synteny	Carg08408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTTATTGAAGCAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCTCCACGACCCTCTGATCGCAAAGGAGTAAGTCAATCACCACATAACTAGATCTTTTGGAATTTCCTTCAATGGGGAAACGTAAGGCGTTGGGTTTTCTCTGTTTAAACATGTTTTGCCAGGGATGTTAGTTAATTTTTTAGTTGCTTGAGGAATTAGCTTATTTTATTTCATTTTATTGGACCAGTTCTAAACTGTAGTTACATACTTTTAACATCATGCTGAAAGTCTTGTTATATTGCTCATCTATCGGCATAGTTTTTGCACCAAATGTGAGATTGTGTTCTCATGTTACCGTTTTTATATCTATTAATATAGAAATCAAGCAAAAGGGTTCTTTTTGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTCGCCCCATATGAAAAGAGAATCACTGAGCTTCTTAAAGTTGGTAAAGACAAGCGTGCTTTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGGGCCAAGAAGAAGCGTGAGGAGATGTCCAGTGTGCTAAGAAAGATGAGGTAATCCAATCTGTCCTTTTAACAACGCAAAACTGCTGTTTTTACATAAACATGGGGGTCTGAATCATGTTTTGTTTGTAACTAAATCGAATGATTCACATCTGGTTATTGTTCGAGTCGTAATTCATAAGTATTATGATTAGCATTCTGATTCCATTTCTGGATATGTTGTATTTTTGCAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGAGATTACTACACTTGTGCTCATATATTCAAAGTTTCTCTCTGGCTACTCTTTTTTTTGTTGTTTTACTACTGAATTTGTTAAGAGACTGAACTCTTTGCTGTAGACTATTTCAGTTTTGTTATCTTTAAACTCGTTTTACTAACACCCAATTTTGTTATGGCTCTGTTATTTTCAATGTCGCGGTTCGGTGAATTAATAGCCTGTCTATGTTTTGAGTGTACGGATCACTCTCAGATGATCATCACATAGCTATTGAGAACGAATTATATCAGATGGTTCTATTTTTCAAATCTTTCGACCTTTTAATATTAGTTCTATAATAATCCATTATTTTGTT

mRNA sequence

AGTTTTATTGAAGCAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCTCCACGACCCTCTGATCGCAAAGGAAAATCAAGCAAAAGGGTTCTTTTTGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTCGCCCCATATGAAAAGAGAATCACTGAGCTTCTTAAAGTTGGTAAAGACAAGCGTGCTTTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGGGCCAAGAAGAAGCGTGAGGAGATGTCCAGTGTGCTAAGAAAGATGAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGAGATTACTACACTTGTGCTCATATATTCAAAGTTTCTCTCTGGCTACTCTTTTTTTTGTTGTTTTACTACTGAATTTGTTAAGAGACTGAACTCTTTGCTGTAGACTATTTCAGTTTTGTTATCTTTAAACTCGTTTTACTAACACCCAATTTTGTTATGGCTCTGTTATTTTCAATGTCGCGGTTCGGTGAATTAATAGCCTGTCTATGTTTTGAGTGTACGGATCACTCTCAGATGATCATCACATAGCTATTGAGAACGAATTATATCAGATGGTTCTATTTTTCAAATCTTTCGACCTTTTAATATTAGTTCTATAATAATCCATTATTTTGTT

Coding sequence (CDS)

ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCTCCACGACCCTCTGATCGCAAAGGAAAATCAAGCAAAAGGGTTCTTTTTGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTCGCCCCATATGAAAAGAGAATCACTGAGCTTCTTAAAGTTGGTAAAGACAAGCGTGCTTTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGGGCCAAGAAGAAGCGTGAGGAGATGTCCAGTGTGCTAAGAAAGATGAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA

Protein sequence

MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK

Homology

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BLAST of Carg08408 vs. NCBI nr
Match: KAG7013242.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 2   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 61

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 62  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111

[Close]

BLAST of Carg08408 vs. NCBI nr
Match: KAG6574185.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1    MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
            MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 965  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 1024

Query: 61   TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
            TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 1025 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 1074

[Close]

BLAST of Carg08408 vs. NCBI nr
Match: XP_022945858.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958050.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022995694.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023532485.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023532486.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023541175.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >KAG6605730.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035637.1 60S ribosomal protein L36-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 4.2e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Carg08408 vs. NCBI nr
Match: XP_022923053.1 (60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923055.1 60S ribosomal protein L36-2-like isoform X2 [Cucurbita moschata] >XP_022923056.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022985002.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985003.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985004.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023552431.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 9.3e-50
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Carg08408 vs. NCBI nr
Match: KAG6576718.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.8 bits (525), Expect = 9.3e-50
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 648 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 707

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 708 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 757

[Close]

BLAST of Carg08408 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.7e-42
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Carg08408 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-40
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]

BLAST of Carg08408 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-39
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]

BLAST of Carg08408 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-33
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]

BLAST of Carg08408 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-29
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 12  VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 71
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  ALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGE 108
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A   GE
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]

BLAST of Carg08408 vs. ExPASy TrEMBL
Match: A0A6J1H2C5 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Carg08408 vs. ExPASy TrEMBL
Match: A0A6J1K6N3 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111491152 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.0e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Carg08408 vs. ExPASy TrEMBL
Match: A0A6J1JC29 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111483099 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-50
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Carg08408 vs. ExPASy TrEMBL
Match: A0A6J1E5T2 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430843 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-50
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Carg08408 vs. ExPASy TrEMBL
Match: A0A6J1HV53 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111467732 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.7e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPK PNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKHPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Carg08408 vs. TAIR 10
Match: AT3G53740.2 (Ribosomal protein L36e family protein )

HSP 1 Score: 171.4 bits (433), Expect = 4.0e-43
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Carg08408 vs. TAIR 10
Match: AT3G53740.3 (Ribosomal protein L36e family protein )

HSP 1 Score: 171.4 bits (433), Expect = 4.0e-43
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Carg08408 vs. TAIR 10
Match: AT3G53740.4 (Ribosomal protein L36e family protein )

HSP 1 Score: 171.4 bits (433), Expect = 4.0e-43
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Carg08408 vs. TAIR 10
Match: AT5G02450.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 164.5 bits (415), Expect = 4.9e-41
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

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BLAST of Carg08408 vs. TAIR 10
Match: AT2G37600.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-40
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

The following BLAST results are available for this feature:

BLAST of Carg08408 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013242.1	4.2e-50	100.00	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6574185.1	4.2e-50	100.00	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022945858.1	4.2e-50	100.00	60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S riboso...	[more]
XP_022923053.1	9.3e-50	99.09	60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1...	[more]
KAG6576718.1	9.3e-50	99.09	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg08408 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M352	5.7e-42	81.25	60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1	[more]
Q9LZ57	6.9e-40	82.86	60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1	[more]
O80929	1.5e-39	82.86	60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1	[more]
P52866	2.2e-33	82.42	60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2	[more]
Q9LRB8	9.4e-29	71.88	60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1	[more]

BLAST of Carg08408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2C5	2.0e-50	100.00	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=...	[more]
A0A6J1K6N3	2.0e-50	100.00	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111491152 PE=3 SV=1	[more]
A0A6J1JC29	4.5e-50	99.09	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111483099 PE=3 SV=1	[more]
A0A6J1E5T2	4.5e-50	99.09	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430843 PE=3 SV=...	[more]
A0A6J1HV53	7.7e-50	99.09	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111467732 PE=3 SV=1	[more]

BLAST of Carg08408 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53740.2	4.0e-43	81.25	Ribosomal protein L36e family protein	[more]
AT3G53740.3	4.0e-43	81.25	Ribosomal protein L36e family protein	[more]
AT3G53740.4	4.0e-43	81.25	Ribosomal protein L36e family protein	[more]
AT5G02450.1	4.9e-41	82.86	Ribosomal protein L36e family protein	[more]
AT2G37600.1	1.1e-40	82.86	Ribosomal protein L36e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038097	Ribosomal protein L36e domain superfamily	GENE3D	1.10.10.1760	60S ribosomal protein L36	coord: 1..105 e-value: 1.0E-44 score: 153.1
IPR000509	Ribosomal protein L36e	PFAM	PF01158	Ribosomal_L36e	coord: 8..101 e-value: 8.5E-43 score: 144.5
IPR000509	Ribosomal protein L36e	PANTHER	PTHR10114	60S RIBOSOMAL PROTEIN L36	coord: 1..110
IPR000509	Ribosomal protein L36e	PROSITE	PS01190	RIBOSOMAL_L36E	coord: 55..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..110
None	No IPR available	PANTHER	PTHR10114:SF14	60S RIBOSOMAL PROTEIN L36-1-RELATED	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08408-RA	Carg08408-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome