Carg08337 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08337
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S11, chloroplastic
LocationCarg_Chr05: 3462197 .. 3464470 (-)
RNA-Seq ExpressionCarg08337
SyntenyCarg08337
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGGTAGACCTTTGGTATCAGTTCAGGGAAGCCCAGCAAAGTGGGGTTTTGGGCCCGGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGGTCCGTTTTCCTTTGTCCCTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACGTAACGAAGCAAGGTTTTACTTTTTTTCAATTTTTCATGCATTTCTTCAACTTTCGGAACTCGGCTCTAGAGCACGCTATCAATTACAGTGCCTCCGTGCTAAAAACTCGAGAAGATCTAAGATTGAACTCCACAGGTCGCCATTTAAATGCCGTGTTTCACAAGTTTCGACTACAGAAGGTTAAAAACACATTTTGATGATTCAAAATCTTTCCAAAACATGTTTTTAATCATTCAGAATCAAATATGGTAAGACATATCCGGAAGTGGTTTTGATCTAAGTCGAAAGTGGTCATAACCGTTTTCAAATGCAGTTGAAAGGGACCTTACTTCAATACTATGAGTCTATATGTATTACACATCCTTTTCAATAGTGACAGTTGGAAAGTGTGACGACTTTAACCTCCAAAAAATCAGTTCTCTCAACTTCCCCAAATGAGATAGATACCTGAATTCTAGGGGCACTTGAGACATTTCACAGCTAGCCACGCTTCGAAACCGAGACCTCGTCTTCTCAGAACGAGTGGTCACAGGGAAGGGGAGAAAAAGATAAGAGGGTAAATTAAATAATTGTGTGTGTGTGTGTGTGTTTTTGGCTTATTTTGTTACCACCACTAGATTCTGTCTGTGAAGGGCGTGGGGTTAGACATTGTTGAAGAGAGGGCAAGTGGGTAATTTAAAACAGGAAAAAACTGAGCATCCAAGTGTTTGGTTAACATCATAGGATGGACAACCAAACATCATATGATTATTAAAACACAATGTTGTCGTCTTTTATGACCACAAACTGAAGCATCAATGTCACTCAGTTGCATGAATGCCTACCTACTTATGGATTGACTTTCCTCTTTTTTTTAGCCTTTTACTTTTGCCGTGAATTCCACTTAATCATCAATACCCTCTTCAATTTTTCCTTTGTATGAATTACGAATATAGATATATACAGATGTATGGGGTCGAGTAATTTCTTAGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGGTATGCAATGAGCAGAAGTCTTGATAAAGAGCCCTGGTCTCGAAAGAGATGCAGCGTTAAGAGCTATATCGTAGAAGTGGTATACTCTTAAATTTCTATTAGTTTTTTTCGTTAAATGTTTCATCCTGATTCATATAATAAACATTTGTATGGATGTCCCATCTTCTTCTCCATCGACAATAAAGACTCGCAACAACAAGGACCATTTTCGACAACTATGAGCACCCTCAAAGTGACCCACGTACAACGTTAGGCTACGGTAACCCACGCCAAATAAACTCACAAACCAGCGTTGAATAGCGTCTGGTTCGAATAAACTCCAAGATCTTTCTCCTATCTCAACACTACAAATTCAAAAGCTCCAACAAGACCCACTAGAAAATCAAAGGGTTTGGAGACATCTAGACATTGAAAGGTCCTCCCCTCCAAGAACAATTTTCAAAAGAAACATGTTTTTACCCCATTGTTCGAAAAGACAACCAAAAAAAGAAGAACAAAAAACAAAAGACTGTTCTTTGTCTCAGTGTTTTTTTGCAATAAATTAAGTGACAGTTTATATGAACATTTATCAGAGGAGAAATAACAGTTAAGAAGGGCCAGCCATAAGTGAAATGCAGTGCAAGAAACTTGCGAAGTAAGAAGCTAAGATATCCGACATCATATAACGACAGGGAAATTACAGGACCCTTAATAAGATTACAAGCAACCATGTCCCCTCTTCCCTCTGATATTTCCACCCTCATTGCAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA

mRNA sequence

ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA

Coding sequence (CDS)

ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACTCATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACATGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA

Protein sequence

MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAIRAKAYQEIPTWKKQAQRKKKTWGGDWFGSEIEIE
Homology
[Close]
BLAST of Carg08337 vs. NCBI nr
Match: KAG7029773.1 (30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASV 60
           MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASV
Sbjct: 1   MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASV 60

Query: 61  VFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAIRAKAYQEIPTWKKQAQRKKK 120
           VFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAIRAKAYQEIPTWKKQAQRKKK
Sbjct: 61  VFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAIRAKAYQEIPTWKKQAQRKKK 120

Query: 121 TWGGDWFGSEIEIE 135
           TWGGDWFGSEIEIE
Sbjct: 121 TWGGDWFGSEIEIE 134

[Close]
BLAST of Carg08337 vs. ExPASy Swiss-Prot
Match: A4QJE8 (30S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps11 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 27/37 (72.97%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI 109
           SWSS GTCGFKG R  T FAAQTA GNAIRA   Q I
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGI 88

[Close]
BLAST of Carg08337 vs. ExPASy Swiss-Prot
Match: A4QJN2 (30S ribosomal protein S11, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rps11 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-05
Identity = 27/37 (72.97%), Postives = 27/37 (72.97%), Query Frame = 0 

Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI 109
           SWSS GTCGFKG R  T FAAQTA GNAIRA   Q I
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGI 88

[Close]
BLAST of Carg08337 vs. ExPASy Swiss-Prot
Match: A4QKD8 (30S ribosomal protein S11, chloroplastic OS=Barbarea verna OX=50458 GN=rps11 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA 103
           SWSS GTCGFKG R  T FAAQTA GNAIRA
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRA 82

[Close]
BLAST of Carg08337 vs. ExPASy Swiss-Prot
Match: Q09ME4 (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ 107
           SWSS GTCGF+G R  T FAAQTA GNAIRA A Q
Sbjct: 52  SWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVADQ 86

[Close]
BLAST of Carg08337 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA 103
           SWSS GTCGFKG R  T FAAQTA GNAIRA
Sbjct: 52  SWSSAGTCGFKGTRRGTPFAAQTAAGNAIRA 82

[Close]
BLAST of Carg08337 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 47.8 bits (112), Expect = 8.2e-06
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 74  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA 103
           SWSS GTCGF+G R  T FAAQTA GNAIRA
Sbjct: 52  SWSSAGTCGFRGTRRGTPFAAQTAAGNAIRA 82

The following BLAST results are available for this feature:
BLAST of Carg08337 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029773.16.4e-69100.0030S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of Carg08337 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4QJE83.0e-0572.9730S ribosomal protein S11, chloroplastic OS=Aethionema cordifolium OX=434059 GN=... [more]
A4QJN23.0e-0572.9730S ribosomal protein S11, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=... [more]
A4QKD85.2e-0580.6530S ribosomal protein S11, chloroplastic OS=Barbarea verna OX=50458 GN=rps11 PE=... [more]
Q09ME45.2e-0574.2930S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=... [more]
A0ZZ685.2e-0580.6530S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1... [more]
BLAST of Carg08337 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg08337 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00750.18.2e-0677.42ribosomal protein S11 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08337-RACarg08337-RAmRNA