Carg08263 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08263
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionEpidermal patterning factor-like protein
LocationCarg_Chr05: 3021816 .. 3022100 (-)
RNA-Seq ExpressionCarg08263
SyntenyCarg08263
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAGGTTTGGCTGCATGCAGGGTTGGTGGAGGGGCAGATGGTGAGGAGTAGCCAAATAGGGTCACGGCCGCCGAGCTGCAGGGGAAGGTGCAAGGCGTGTGGAGGGCGTTGTGAGGCGGTGCAAGTACCAGTGGCGGCGCTGCGTGATTCTTCTTCACATCAGAATCAAAGAAAAAGAAGAACAACCCATTTCTCTGCTCTGTCTAGTGAAGATGAGACCTCTAATTACAAGCCGATCAGCTGGAAATGCAAATGTGGGAATTTCATCTTCAACCCATGA

mRNA sequence

ATGATTGAGGTTTGGCTGCATGCAGGGTTGGTGGAGGGGCAGATGGTGAGGAGTAGCCAAATAGGGTCACGGCCGCCGAGCTGCAGGGGAAGGTGCAAGGCGTGTGGAGGGCGTTGTGAGGCGGTGCAAGTACCAGTGGCGGCGCTGCGTGATTCTTCTTCACATCAGAATCAAAGAAAAAGAAGAACAACCCATTTCTCTGCTCTGTCTAGTGAAGATGAGACCTCTAATTACAAGCCGATCAGCTGGAAATGCAAATGTGGGAATTTCATCTTCAACCCATGA

Coding sequence (CDS)

ATGATTGAGGTTTGGCTGCATGCAGGGTTGGTGGAGGGGCAGATGGTGAGGAGTAGCCAAATAGGGTCACGGCCGCCGAGCTGCAGGGGAAGGTGCAAGGCGTGTGGAGGGCGTTGTGAGGCGGTGCAAGTACCAGTGGCGGCGCTGCGTGATTCTTCTTCACATCAGAATCAAAGAAAAAGAAGAACAACCCATTTCTCTGCTCTGTCTAGTGAAGATGAGACCTCTAATTACAAGCCGATCAGCTGGAAATGCAAATGTGGGAATTTCATCTTCAACCCATGA

Protein sequence

MIEVWLHAGLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHFSALSSEDETSNYKPISWKCKCGNFIFNP
Homology
BLAST of Carg08263 vs. NCBI nr
Match: KAG6598761.1 (EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029700.1 EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MIEVWLHAGLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRK 60
          MIEVWLHAGLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRK
Sbjct: 1  MIEVWLHAGLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRK 60

Query: 61 RRTTHFSALSSEDETSNYKPISWKCKCGNFIFNP 95
          RRTTHFSALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 61 RRTTHFSALSSEDETSNYKPISWKCKCGNFIFNP 94

BLAST of Carg08263 vs. NCBI nr
Match: XP_023546258.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 2.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 9   GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHFSA 68
           GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHFSA
Sbjct: 33  GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHFSA 92

Query: 69  LSSEDETSNYKPISWKCK 87
           LSSEDETSNYKPISWKCK
Sbjct: 93  LSSEDETSNYKPISWKCK 110

BLAST of Carg08263 vs. NCBI nr
Match: XP_022996868.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 9   GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHFSA 68
           GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRD SSHQNQRKRRTTHFSA
Sbjct: 33  GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRD-SSHQNQRKRRTTHFSA 92

Query: 69  LSSEDETSNYKPISWKCK 87
           LSSEDETSNYKPISWKCK
Sbjct: 93  LSSEDETSNYKPISWKCK 109

BLAST of Carg08263 vs. NCBI nr
Match: XP_038886514.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 5.2e-25
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0

Query: 13  GQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRT---THFS-- 72
           G M+R +QIGSRPPSCR RC+ CGG CEAVQVPV AL D  SHQNQRK+RT   +HFS  
Sbjct: 59  GMMMR-NQIGSRPPSCRRRCRECGGHCEAVQVPV-ALHD-LSHQNQRKKRTSRSSHFSVN 118

Query: 73  -----ALSSEDETSNYKPISWKCKCGNFIFNP 95
                ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 119 SKHDVALSSEDETSNYKPISWKCKCGNFIFNP 147

BLAST of Carg08263 vs. NCBI nr
Match: XP_022131875.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 9.8e-24
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0

Query: 15  MVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHF-------- 74
           M+R SQIGSRPPSCR RC+ CGG CEA+QVPV AL D  S QNQRK+R++HF        
Sbjct: 63  MIR-SQIGSRPPSCRRRCRECGGHCEAIQVPV-ALHD--SQQNQRKKRSSHFPAAAATSA 122

Query: 75  ------SALSSEDETSNYKPISWKCKCGNFIFNP 95
                  ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 123 GASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 152

BLAST of Carg08263 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-12
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 14  QMVRSSQIGSRPPSC-RGRCKACGGRCEAVQVPV---AALRDSSSHQNQRKRRTTHFSAL 73
           +M+    IGSRPP C R RC++C G CEA+QVP      L    +  +     T H    
Sbjct: 46  KMMMRGLIGSRPPRCERVRCRSC-GHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYT 105

Query: 74  SSEDETSNYKPISWKCKCGNFIFNP 95
             +D T NYKP+SWKCKCGN I+NP
Sbjct: 106 RGDDST-NYKPMSWKCKCGNSIYNP 128

BLAST of Carg08263 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-07
Identity = 29/78 (37.18%), Postives = 38/78 (48.72%), Query Frame = 0

Query: 19  SQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTH--FSALSSEDETS 78
           +++GS PPSC  RC  C   C A+QVP    R   +  N           S  +  D+ S
Sbjct: 46  ARLGSTPPSCHNRCNNC-HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 105

Query: 79  NYKPISWKCKCGNFIFNP 95
           NYKP+ WKC C    +NP
Sbjct: 106 NYKPMGWKCHCNGHFYNP 122

BLAST of Carg08263 vs. ExPASy TrEMBL
Match: A0A6J1KC86 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491985 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.8e-35
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 9   GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHFSA 68
           GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRD SSHQNQRKRRTTHFSA
Sbjct: 33  GLVEGQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRD-SSHQNQRKRRTTHFSA 92

Query: 69  LSSEDETSNYKPISWKCK 87
           LSSEDETSNYKPISWKCK
Sbjct: 93  LSSEDETSNYKPISWKCK 109

BLAST of Carg08263 vs. ExPASy TrEMBL
Match: A0A6J1BQW9 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111004910 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.7e-24
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0

Query: 15  MVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHF-------- 74
           M+R SQIGSRPPSCR RC+ CGG CEA+QVPV AL D  S QNQRK+R++HF        
Sbjct: 63  MIR-SQIGSRPPSCRRRCRECGGHCEAIQVPV-ALHD--SQQNQRKKRSSHFPAAAATSA 122

Query: 75  ------SALSSEDETSNYKPISWKCKCGNFIFNP 95
                  ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 123 GASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 152

BLAST of Carg08263 vs. ExPASy TrEMBL
Match: A0A0A0LPQ0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G372820 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 13  GQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQ--NQRKRRTT------ 72
           G M+R +QIGSRPPSCR +C+ CGG CEAVQVPV AL DS+ +Q   +RKRR++      
Sbjct: 59  GMMMR-NQIGSRPPSCRRKCRECGGHCEAVQVPV-ALHDSNQNQRKGRRKRRSSSRYFSV 118

Query: 73  ---HFSALSSEDETSNYKPISWKCKCGNFIFNP 95
              H  ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 119 NSKHDVALSSEDETSNYKPISWKCKCGNFIFNP 149

BLAST of Carg08263 vs. ExPASy TrEMBL
Match: A0A6J1KP85 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496352 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 61/95 (64.21%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 16  VRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRR----TTHFS---- 75
           +R SQIGS+PPSCR RC+ CGG CEAVQVPVA     SSH+ QR+R      +HFS    
Sbjct: 60  MRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAV--HDSSHEKQRRRTRRRIRSHFSSEAS 119

Query: 76  --------ALSSEDETSNYKPISWKCKCGNFIFNP 95
                   ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 120 SSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 152

BLAST of Carg08263 vs. ExPASy TrEMBL
Match: A0A5A7VH43 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003900 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.4e-22
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 0

Query: 13  GQMVRSSQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRR---------- 72
           G M+R +QIGSRPPSCR +C  CGG CEAVQVPV AL DS+ +Q + +RR          
Sbjct: 64  GMMMR-NQIGSRPPSCRRKCMECGGHCEAVQVPV-ALHDSNQNQKKGRRRRRSSRRYFSD 123

Query: 73  -TTHFSALSSEDETSNYKPISWKCKCGNFIFNP 95
            + H  ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 124 HSKHDVALSSEDETSNYKPISWKCKCGNFIFNP 154

BLAST of Carg08263 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-13
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 14  QMVRSSQIGSRPPSC-RGRCKACGGRCEAVQVPV---AALRDSSSHQNQRKRRTTHFSAL 73
           +M+    IGSRPP C R RC++C G CEA+QVP      L    +  +     T H    
Sbjct: 46  KMMMRGLIGSRPPRCERVRCRSC-GHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYT 105

Query: 74  SSEDETSNYKPISWKCKCGNFIFNP 95
             +D T NYKP+SWKCKCGN I+NP
Sbjct: 106 RGDDST-NYKPMSWKCKCGNSIYNP 128

BLAST of Carg08263 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-08
Identity = 29/78 (37.18%), Postives = 38/78 (48.72%), Query Frame = 0

Query: 19  SQIGSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTH--FSALSSEDETS 78
           +++GS PPSC  RC  C   C A+QVP    R   +  N           S  +  D+ S
Sbjct: 46  ARLGSTPPSCHNRCNNC-HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 105

Query: 79  NYKPISWKCKCGNFIFNP 95
           NYKP+ WKC C    +NP
Sbjct: 106 NYKPMGWKCHCNGHFYNP 122

BLAST of Carg08263 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 40.8 bits (94), Expect = 7.0e-04
Identity = 23/72 (31.94%), Postives = 34/72 (47.22%), Query Frame = 0

Query: 17  RSSQIGSRPPSCRGRCKACGGRCEAVQVP-VAALRDSSSHQNQRKRRTTHFSALSSEDET 76
           R  +IGS+PPSC  +C  C   CEA+Q P ++++   S H                    
Sbjct: 53  RRRRIGSKPPSCEKKCYGC-EPCEAIQFPTISSIPHLSPHY------------------- 104

Query: 77  SNYKPISWKCKC 88
           +NY+P  W+C C
Sbjct: 113 ANYQPEGWRCHC 104

BLAST of Carg08263 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 9.2e-04
Identity = 25/73 (34.25%), Postives = 32/73 (43.84%), Query Frame = 0

Query: 22  GSRPPSCRGRCKACGGRCEAVQVPVAALRDSSSHQNQRKRRTTHFSALSSEDETSNYKPI 81
           GS PP+CR +C  C   C+ V VP+                      LS   E   Y P 
Sbjct: 60  GSSPPTCRSKCGKC-QPCKPVHVPIQ-------------------PGLSMPLE---YYPE 109

Query: 82  SWKCKCGNFIFNP 95
           +W+CKCGN +F P
Sbjct: 120 AWRCKCGNKLFMP 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6598761.11.3e-47100.00EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subs... [more]
XP_023546258.12.2e-36100.00EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo][more]
XP_022996868.11.6e-3498.72EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima][more]
XP_038886514.15.2e-2573.91EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida][more]
XP_022131875.19.8e-2468.09EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1... [more]
Match NameE-valueIdentityDescription
Q9T0682.3e-1245.88EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LFT58.6e-0737.18EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Match NameE-valueIdentityDescription
A0A6J1KC867.8e-3598.72Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1BQW94.7e-2468.09Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0LPQ01.2e-2266.67Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G372... [more]
A0A6J1KP852.0e-2264.21Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A5A7VH433.4e-2264.52Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
AT4G37810.11.7e-1345.88unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G10310.16.1e-0837.18unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13898.17.0e-0431.94unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
AT4G14723.19.2e-0434.25BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 20..94
e-value: 1.1E-18
score: 66.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..77
NoneNo IPR availablePANTHERPTHR33109:SF68EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2coord: 14..94
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 14..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08263-RACarg08263-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane