Carg08261 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08261
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCytochrome c550
LocationCarg_Chr05: 3004843 .. 3006536 (-)
RNA-Seq ExpressionCarg08261
SyntenyCarg08261
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATACGCCGGTGGAAGACAGAGATTTGGGTTGCCGGAGAAGCTATCGGCTAACCCTTGTTTGATCAAAGACATCGGAATCGGACCGGAAAGTTGATTGTTCGAGAAATTCAAGGAACTTGGGAACAATTTACCCAAACTTTCTGGGATTTTCCCGGATAAACGATTGTTTGAGAGATCAAGAACATTGAGGGATTTTAACGATGTCAATGAACTAGGGATTGAAGAATTCAATTGGTTTCCTTGTAACATCACCAGATTTAGCTTCTTCAGGCTACCAATCTGCGGCGGCACTGCGCCGGAGAGGAGATTGTTACTGAGATCTAGCTTCACCAGATTGGTGGCTGCTGAAATCTCCGGCGGGATAACTCCAGAAATCCTGTTTTTTTGTAAGAACAATTCCGACAAGTTTCTACCCTGTGAGATTGAATTTGAAATGGAACCAGTGAGGTTATTATGAGCAACATCAATGATTGAAACATGTGGGAGACCAAAAACACCTTCAGGAATTGCTCCGACCAGCTGATTGAAACTAATTCTAAACCTTAAAAGTGACCGGCATTCAGCAAAACTCGCCGGAATTTCTCCGGAAAGGCTGTTTTGAAGAACAAGAAAGTAGAGCAATTCCCCTCCTCTGCATATATCCAATGGCAATGATCCCGACAGGCGATTCTCCGACAAGTCGACGACGACCATAGGTGAGAACTTCCCCAACTTTTGTGGAATCTGTCCTGTAAGAAAATTGTCATAAAGTGATAGCATAGTTAGTGTTGTTGAGTTAGCTAATACACTTGGAATCTCTCCTGTTAGGCTATTGTTGTAAATCTGTAGAACTTTAAGCTTAGGGAGTTTGCATATAGATTCCGGAATCTCCCCGGTCAAAAGGTTCACCGACATGTCGACGTCGACGAGCTCGGTTAGATTTCCGAGCTCTTCCAGTATGTTTCCTGTGAGTTGATTGTAATAGAGTTCAAGTTGTTGCAGGTTCTTGAGCAAGGAGATTTCTTTTGGAATCTCTCCCTTGAGAAAATTCCCACTTAGTTCGAGATCAATAAGCGACGTCATGTTCCCGATCGATCGAGGGATTTCTCCGTCCAACATACATGTTGTCAACACCATAGATTTCAGCTTCTTCAATCCAGAGATCTTCTCAGGTAATTTCCATAAGTTGAGATTATAATTCTCGTTGAAATTCAGTATCTCGAGATTAACAAGGTCGAAAACCGACATGGGGAAATCGCCGGTGAACGAATTGTAGGAGAGGTCGAGTACACGGAGTTGTTTCATTTGCGATAAATCCGGGATTGTTCCATTGAGATATAGAGAACTCATGTCAAGCTCTTGAATGAGAGAGCAGTTGGTGATTCCTGAGGGAAAACGCCCCGACAATCCGGTATCAGCGAGGCGAAGAACTCTTAGTGATGGCAGGTAAGAGCATACATCGTCCGGGAAGGTACCGGAGAGAGGGTGGCCGGAGATATCGATCCGAACGACATGACCGCCGTCATTGCAGCGGATTCCAGTGAAGTTGCATAAGGATTTTCCTTGTGAAAGATCCCAATTAGAGAGGAGCTCACCGGTGGCAGTTGTTTGCATGAGAAGGAAGAACTGGGACTGGTTGGCTATGGCGGCAGTAAGAGCTTGAGAAGAAGCAATGGCGGAAGTGAAGAACAGAAGAAGAAAGAAGGCTGA

mRNA sequence

ATGAAATACGCCGGTGGAAGACAGAGATTTGGGTTGCCGGAGAAGCTATCGGCTAACCCTTGTTTGATCAAAGACATCGGAATCGGACCGGAAAGGATTGAAGAATTCAATTGGTTTCCTTGTAACATCACCAGATTTAGCTTCTTCAGGCTACCAATCTGCGGCGGCACTGCGCCGGAGAGGAGATTGTTACTGAGATCTAGCTTCACCAGATTGGTGGCTGCTGAAATCTCCGGCGGGATAACTCCAGAAATCCTGTTTTTTTGTAAGAACAATTCCGACAAGTTTCTACCCTGTGAGATTGAATTTGAAATGGAACCAGTGAGGTTCTTGAGCAAGGAGATTTCTTTTGGAATCTCTCCCTTGAGAAAATTCCCACTTAGTTCGAGATCAATAAGCGACGTCATGTTCCCGATCGATCGAGGGATTTCTCCGTCCAACATACATGTTGTCAACACCATAGATTTCAGCTTCTTCAATCCAGAGATCTTCTCAGAGCAGTTGGTGATTCCTGAGGGAAAACGCCCCGACAATCCGGTATCAGCGAGGCGAAGAACTCTTAGTGATGGCAGAGCATACATCGTCCGGGAAGGTACCGGAGAGAGGGTGGCCGGAGATATCGATCCGAACGACATGACCGCCGTCATTGCAGCGGATTCCAGTGAAATCCCAATTAGAGAGGAGCTCACCGGTGGCAGTTGTTTGCATGAGAAGGAAGAACTGGGACTGGTTGGCTATGGCGGCAGTAAGAGCTTGAGAAGAAGCAATGGCGGAAGTGAAGAACAGAAGAAGAAAGAAGGCTGA

Coding sequence (CDS)

ATGAAATACGCCGGTGGAAGACAGAGATTTGGGTTGCCGGAGAAGCTATCGGCTAACCCTTGTTTGATCAAAGACATCGGAATCGGACCGGAAAGGATTGAAGAATTCAATTGGTTTCCTTGTAACATCACCAGATTTAGCTTCTTCAGGCTACCAATCTGCGGCGGCACTGCGCCGGAGAGGAGATTGTTACTGAGATCTAGCTTCACCAGATTGGTGGCTGCTGAAATCTCCGGCGGGATAACTCCAGAAATCCTGTTTTTTTGTAAGAACAATTCCGACAAGTTTCTACCCTGTGAGATTGAATTTGAAATGGAACCAGTGAGGTTCTTGAGCAAGGAGATTTCTTTTGGAATCTCTCCCTTGAGAAAATTCCCACTTAGTTCGAGATCAATAAGCGACGTCATGTTCCCGATCGATCGAGGGATTTCTCCGTCCAACATACATGTTGTCAACACCATAGATTTCAGCTTCTTCAATCCAGAGATCTTCTCAGAGCAGTTGGTGATTCCTGAGGGAAAACGCCCCGACAATCCGGTATCAGCGAGGCGAAGAACTCTTAGTGATGGCAGAGCATACATCGTCCGGGAAGGTACCGGAGAGAGGGTGGCCGGAGATATCGATCCGAACGACATGACCGCCGTCATTGCAGCGGATTCCAGTGAAATCCCAATTAGAGAGGAGCTCACCGGTGGCAGTTGTTTGCATGAGAAGGAAGAACTGGGACTGGTTGGCTATGGCGGCAGTAAGAGCTTGAGAAGAAGCAATGGCGGAAGTGAAGAACAGAAGAAGAAAGAAGGCTGA

Protein sequence

MKYAGGRQRFGLPEKLSANPCLIKDIGIGPERIEEFNWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAEISGGITPEILFFCKNNSDKFLPCEIEFEMEPVRFLSKEISFGISPLRKFPLSSRSISDVMFPIDRGISPSNIHVVNTIDFSFFNPEIFSEQLVIPEGKRPDNPVSARRRTLSDGRAYIVREGTGERVAGDIDPNDMTAVIAADSSEIPIREELTGGSCLHEKEELGLVGYGGSKSLRRSNGGSEEQKKKEG
Homology
BLAST of Carg08261 vs. NCBI nr
Match: PON56471.1 (hypothetical protein TorRG33x02_296220 [Trema orientale])

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-21
Identity = 71/184 (38.59%), Postives = 83/184 (45.11%), Query Frame = 0

Query: 8   QRFGLPEKLSANPCLIKDIGIGPER----------------------------------- 67
           QR GLPEKLS NP LI+D GIGPE                                    
Sbjct: 15  QRPGLPEKLSTNPPLIRDCGIGPESMLCEKLIEFGKSSQRLSGILPVKRLFERSRTLRDL 74

Query: 68  --------IEEFNWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAEISGGITPE 127
                   IEEFN  PC  ++F+ F+LPI GG  PERRLLL S  T+LVA EI  G TPE
Sbjct: 75  SEESESAGIEEFNLLPCKRSKFNLFKLPIWGGIGPERRLLLMSILTKLVALEIPTGSTPE 134

Query: 128 ILFFCKNNSDKFLPCEIEFEMEPVRFL----------SKEISFGISPLRKFPLSSRSISD 139
           IL  C NNSDKF    IE  + P++ L                GI P ++  L+     D
Sbjct: 135 ILLLCMNNSDKFRALPIEPGIGPLKLLLPRSIIDTWGRPRSPMGIGPSKRLELTRNLSRD 194

BLAST of Carg08261 vs. NCBI nr
Match: GER40230.1 (cytochrome c550 [Striga asiatica])

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-14
Identity = 57/146 (39.04%), Postives = 72/146 (49.32%), Query Frame = 0

Query: 33  IEEFNWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAEISGGITPEILFFCKNN 92
           I E +   C+I+RFS FRLPI  G  P++R  LRS  TRLVA  ISGGI PEI F C  +
Sbjct: 101 ISELSSLFCSISRFSDFRLPISQGIGPDKRFALRSILTRLVAQAISGGILPEIRFPCMKS 160

Query: 93  SDKFLPCEIEFEMEPVRFLSKEISFGISPLRKFPLSSRSISDVMFPIDRGISPSNIHVVN 152
           SDKF    I   + PV   +  I  GI P +   L+   +SD     + GISP       
Sbjct: 161 SDKFFAARISSGIGPVNLAN--IPGGILPSKLLLLTRNRMSDSHSAYEAGISPER----- 220

Query: 153 TIDFSFFNPEIFSEQLVIPEGKRPDN 179
             +F      +    L  P G  PD+
Sbjct: 221 --EFWRIRRNLSFPMLQSPSGSGPDS 237

BLAST of Carg08261 vs. ExPASy TrEMBL
Match: A0A2P5C645 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_296220 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 71/184 (38.59%), Postives = 83/184 (45.11%), Query Frame = 0

Query: 8   QRFGLPEKLSANPCLIKDIGIGPER----------------------------------- 67
           QR GLPEKLS NP LI+D GIGPE                                    
Sbjct: 15  QRPGLPEKLSTNPPLIRDCGIGPESMLCEKLIEFGKSSQRLSGILPVKRLFERSRTLRDL 74

Query: 68  --------IEEFNWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAEISGGITPE 127
                   IEEFN  PC  ++F+ F+LPI GG  PERRLLL S  T+LVA EI  G TPE
Sbjct: 75  SEESESAGIEEFNLLPCKRSKFNLFKLPIWGGIGPERRLLLMSILTKLVALEIPTGSTPE 134

Query: 128 ILFFCKNNSDKFLPCEIEFEMEPVRFL----------SKEISFGISPLRKFPLSSRSISD 139
           IL  C NNSDKF    IE  + P++ L                GI P ++  L+     D
Sbjct: 135 ILLLCMNNSDKFRALPIEPGIGPLKLLLPRSIIDTWGRPRSPMGIGPSKRLELTRNLSRD 194

BLAST of Carg08261 vs. ExPASy TrEMBL
Match: A0A5A7Q4V2 (Cytochrome c550 OS=Striga asiatica OX=4170 GN=STAS_16892 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 57/146 (39.04%), Postives = 72/146 (49.32%), Query Frame = 0

Query: 33  IEEFNWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAEISGGITPEILFFCKNN 92
           I E +   C+I+RFS FRLPI  G  P++R  LRS  TRLVA  ISGGI PEI F C  +
Sbjct: 101 ISELSSLFCSISRFSDFRLPISQGIGPDKRFALRSILTRLVAQAISGGILPEIRFPCMKS 160

Query: 93  SDKFLPCEIEFEMEPVRFLSKEISFGISPLRKFPLSSRSISDVMFPIDRGISPSNIHVVN 152
           SDKF    I   + PV   +  I  GI P +   L+   +SD     + GISP       
Sbjct: 161 SDKFFAARISSGIGPVNLAN--IPGGILPSKLLLLTRNRMSDSHSAYEAGISPER----- 220

Query: 153 TIDFSFFNPEIFSEQLVIPEGKRPDN 179
             +F      +    L  P G  PD+
Sbjct: 221 --EFWRIRRNLSFPMLQSPSGSGPDS 237

BLAST of Carg08261 vs. ExPASy TrEMBL
Match: A0A7N0V1S0 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 34  EEFNWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAEISGGITPEILFFCKNNS 93
           EE + FPCNI+  SF R PI  G   ERRL L S+FTR  A EIS G  PE +F   N+S
Sbjct: 38  EEVSLFPCNISMLSFLRFPIAEGIEDERRLWLASNFTRFWALEISEGTAPESIFLWMNSS 97

Query: 94  DKFLPCEIEFEMEPVRFLS 113
           DK     I F MEP ++L+
Sbjct: 98  DKLAAYAIPFGMEPCKWLN 116

BLAST of Carg08261 vs. ExPASy TrEMBL
Match: A0A6N2LJ29 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-06
Identity = 44/151 (29.14%), Postives = 62/151 (41.06%), Query Frame = 0

Query: 17  SANPCLIKDIGIGPERIEEFNWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAE 76
           S NPC    +G+ P +  E     CN   F     P  GGT P++     +S   ++   
Sbjct: 16  SFNPC--NSVGMVPCKWFEDRSIKCNRVAF-----PSSGGTYPDKLFSPITSLVSVLMFL 75

Query: 77  ISGGITPEILFFCKNNSDKFLPCEIEFEMEPVRFL----------SKEISFGISPLRKFP 136
           I  GI PE L      +D+FL   +E  + PV+ L          S  ISFG+ P    P
Sbjct: 76  IERGIGPESLLLSSKKTDRFLKFPMESGIPPVKTLLDKSSLLRDSSNPISFGMKPESLLP 135

Query: 137 LSSRSISDVMFPIDRGISPSNIHVVNTIDFS 158
              R    + FP++ GI P  +     I  S
Sbjct: 136 RRKRMDRFLKFPMEAGIKPVRLFCCRVISLS 159

BLAST of Carg08261 vs. ExPASy TrEMBL
Match: A0A7C9AG34 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 38/109 (34.86%), Postives = 48/109 (44.04%), Query Frame = 0

Query: 37  NWFPCNITRFSFFRLPICGGTAPERRLLLRSSFTRLVAAEISGGITPEILFFCKNNSDKF 96
           NWF C  T   F       G +P+R LL    ++RL   +I  GI+P       NNS + 
Sbjct: 44  NWFRCKETFLRFLSSVTSKGNSPDRLLLNTRIYSRLGIFQILAGISPVKRLL--NNSSR- 103

Query: 97  LPCEIEFEMEPVRFLSKEISFGISPLRKFPLSSRSISDVMFPIDRGISP 146
                      +  LS  IS GISP   F  SS S+ D+ FP   GI P
Sbjct: 104 -----------LNLLSFPISLGISPSSLFSFSSNSVRDLQFPSSGGILP 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON56471.14.4e-2138.59hypothetical protein TorRG33x02_296220 [Trema orientale][more]
GER40230.14.0e-1439.04cytochrome c550 [Striga asiatica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5C6452.1e-2138.59Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_296220 PE=4 SV... [more]
A0A5A7Q4V21.9e-1439.04Cytochrome c550 OS=Striga asiatica OX=4170 GN=STAS_16892 PE=4 SV=1[more]
A0A7N0V1S01.5e-1150.63Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A6N2LJ299.7e-0629.14Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS238795 PE=4 SV=... [more]
A0A7C9AG341.8e-0434.86Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..267

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08261-RACarg08261-RAmRNA