Carg08256 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg08256
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsucrose transport protein SUC4-like
LocationCarg_Chr05: 2994576 .. 2996339 (-)
RNA-Seq ExpressionCarg08256
SyntenyCarg08256
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTTCTATTGCTGGAAGGGATATAAGTGCAGTTAACATGGGAAAACATGGGTCCTCTCAACTTGTATCTGCAAGAAGGAAAACACTGAAGGTTTTATTTTGAAATAATGAAGGAACATTACAGTTCGTGCGTTCTGTCTTTAATCATTTGATTTTGTTAAATGAGAAAGATTGTCAATTTTGGACTGGCCTTTTTCAGGGACATACTAAGACAAACTTCTCTTGAAAATCCAGTTGTGGATATCCCCGTTGGTCAATTTGCCTTTTTGTCTTGGGAAAAGATTTAGAGATGCAGATGATATACATTTCCATGTGGAATCACAGGGAGGGGATTAGACTTCGTCCATATCTGTAGTCCTGGACTCACTATCCAATATGTAATGGATGGTAATCGAAATAAAATGATTTGACATAACATTTTGTTGTTTCTTCAAAGCTTTTTGGTCGTTAGTGGGCCTCTCTGTAGGATTCAATCCAGCTGAAAGATTTGGCTGTTGCCTTAGGTAACATTGTCAGGAACATATTTTGATCTGTAAGATATGGTAGAATTTGAAGGCCATAGTAGTAAAACATTTTAATCTTAGCTGAACTTTTTTTTTTTTTGTCATAAACATATATGCCACATGATTCAATTTAAATTTTGAGGAAGGGACAGTTCTTCTCATAAATATGTGGTCTAGTTTTACATCTCTGGCTTAAAGATAAAAACAGTATAGCAATTCTGCGGGATAATTATGTTTCACAAAGCCATTTATTTTCTTGGTCCCATACATTGTGCTTCTGTCTGCTTCAGAACAGAACAGCAGGGTGGGGCTGGTTACTTTGTTGAGAGACAGTAATTGCATGAGACATTCTGAAGACTCAAAGCTTGTTTGGGATTGCACTTGAGTTTTTTTCCTTTTCTCTTCTTTTTATTTAAATAATAAAAGTCAAGCATTTAGTTTCTAGTGCATGTCATGTCCTGAAAATGTTGCATATGCAGTTGTAGTTGTAACCCAATTATTTTACCAGTGGAGGGATTGCATCATCTAGTATTAAGAAATTCTTTTAACTAATTGATCTAATATTCGTAAAGCTATTTATGTGAGATCCCATGTTGGCTGAAGAGGAGAATGTAGCATTTTTTATAAGGTGTGGGAACTTCTCCCTAGCATATGCGTTTTAAAACCGTGAGACTGATGACGATACCTAACAGGCTGAAGCGGACAATATCTGTCAGTGGTGTGCTTAGGCTGTTACAAATAGTATCAAAACTAGGCAGCGAGTGGTGTACCAACTAGGACACTGAACCCGAAGGGAGGTGGATTGTGAGATCATACATCGATCGGAGAGGAGAATGAAATATTCTTTATAAGGGTGTGGAAAACTCTCCCTAACAAATGCATTTTAAAACTGTGAGACTGACGGTGATACATAACGAGCCGATGCGGACAATATTTGCTAGCGGTGGACTTGGGCTTTCACAATTTCAATCACCATACCATATTTGCTCTCATAATAACAAATGGTGGTAGAATGCTATTAGTAACTTTGTCATCCATTTTTTTCTTAACCATTTTGTGGTTATCTTTTTCACTAATTTTATTGTTTCTGATAATAGGTTGTGGTGTTCCTGAGATGTGGACCATAGGATCAGCTGTTTGGTGGTGGGAACTCTCCAGCTCTTGCTCTGGCAGCACTTGCAGCCTTTGCAAGTGGCCTCATTGCCATCTTGGCTCTTCCTCGGTCTACTGCTCAGAAGCCTAGAACCCTCACATGA

mRNA sequence

ATGGAACCTTCTATTGCTGGAAGGGATATAAGTGCAGTTAACATGGGAAAACATGGGTCCTCTCAACTTGTATCTGCAAGAAGGAAAACACTGAAGGATCAGCTGTTTGGTGGTGGGAACTCTCCAGCTCTTGCTCTGGCAGCACTTGCAGCCTTTGCAAGTGGCCTCATTGCCATCTTGGCTCTTCCTCGGTCTACTGCTCAGAAGCCTAGAACCCTCACATGA

Coding sequence (CDS)

ATGGAACCTTCTATTGCTGGAAGGGATATAAGTGCAGTTAACATGGGAAAACATGGGTCCTCTCAACTTGTATCTGCAAGAAGGAAAACACTGAAGGATCAGCTGTTTGGTGGTGGGAACTCTCCAGCTCTTGCTCTGGCAGCACTTGCAGCCTTTGCAAGTGGCCTCATTGCCATCTTGGCTCTTCCTCGGTCTACTGCTCAGAAGCCTAGAACCCTCACATGA

Protein sequence

MEPSIAGRDISAVNMGKHGSSQLVSARRKTLKDQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT
Homology
[Close]
BLAST of Carg08256 vs. NCBI nr
Match: KAG7029694.1 (Sucrose transport protein SUC4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MEPSIAGRDISAVNMGKHGSSQLVSARRKTLKDQLFGGGNSPALALAALAAFASGLIAIL 60
          MEPSIAGRDISAVNMGKHGSSQLVSARRKTLKDQLFGGGNSPALALAALAAFASGLIAIL
Sbjct: 1  MEPSIAGRDISAVNMGKHGSSQLVSARRKTLKDQLFGGGNSPALALAALAAFASGLIAIL 60

Query: 61 ALPRSTAQKPRTLT 75
          ALPRSTAQKPRTLT
Sbjct: 61 ALPRSTAQKPRTLT 74

[Close]
BLAST of Carg08256 vs. NCBI nr
Match: KAG6598754.1 (Sucrose transport protein SUC4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 31  LKDQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           L DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT
Sbjct: 202 LADQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 245

[Close]
BLAST of Carg08256 vs. NCBI nr
Match: XP_022131413.1 (sucrose transport protein SUC4 isoform X2 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPA A+AALAAFASGLIAILALPRS AQKPRTLT
Sbjct: 438 DQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQKPRTLT 479

[Close]
BLAST of Carg08256 vs. NCBI nr
Match: XP_022131412.1 (sucrose transport protein SUC4 isoform X1 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPA A+AALAAFASGLIAILALPRS AQKPRTLT
Sbjct: 466 DQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQKPRTLT 507

[Close]
BLAST of Carg08256 vs. NCBI nr
Match: XP_038884731.1 (sucrose transport protein SUC4 isoform X1 [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPA A+AALAAFASGLIAILALPRS+AQ PR LT
Sbjct: 466 DQLFGGGNSPAFAVAALAAFASGLIAILALPRSSAQNPRNLT 507

[Close]
BLAST of Carg08256 vs. ExPASy Swiss-Prot
Match: Q9FE59 (Sucrose transport protein SUC4 OS=Arabidopsis thaliana OX=3702 GN=SUC4 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-06
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKP 71
           DQLFGGGNSPALA+ A   F  G++AILALPR+  QKP
Sbjct: 469 DQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKP 506

[Close]
BLAST of Carg08256 vs. ExPASy Swiss-Prot
Match: A2ZN77 (Sucrose transport protein SUT2 OS=Oryza sativa subsp. indica OX=39946 GN=SUT2 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-05
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRS 66
           DQLFGGGN+PA A+AA A+F  GL+AIL LPR+
Sbjct: 459 DQLFGGGNAPAFAVAAAASFIGGLVAILGLPRA 491

[Close]
BLAST of Carg08256 vs. ExPASy Swiss-Prot
Match: Q0ILJ3 (Sucrose transport protein SUT2 OS=Oryza sativa subsp. japonica OX=39947 GN=SUT2 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-05
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRS 66
           DQLFGGGN+PA A+AA A+F  GL+AIL LPR+
Sbjct: 459 DQLFGGGNAPAFAVAAAASFIGGLVAILGLPRA 491

[Close]
BLAST of Carg08256 vs. ExPASy TrEMBL
Match: A0A6J1BQY1 (sucrose transport protein SUC4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004634 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-10
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPA A+AALAAFASGLIAILALPRS AQKPRTLT
Sbjct: 466 DQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQKPRTLT 507

[Close]
BLAST of Carg08256 vs. ExPASy TrEMBL
Match: A0A6J1BT99 (sucrose transport protein SUC4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004634 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-10
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPA A+AALAAFASGLIAILALPRS AQKPRTLT
Sbjct: 438 DQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQKPRTLT 479

[Close]
BLAST of Carg08256 vs. ExPASy TrEMBL
Match: B6V3B6 (Sucrose transporter OS=Cucumis melo OX=3656 GN=SUT4 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPA A+AALAAFASGLIAILALPRS AQ PR LT
Sbjct: 462 DQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQNPRNLT 503

[Close]
BLAST of Carg08256 vs. ExPASy TrEMBL
Match: A0A1S3BBL2 (sucrose transport protein SUC4 isoform X1 OS=Cucumis melo OX=3656 GN=SUT4 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPA A+AALAAFASGLIAILALPRS AQ PR LT
Sbjct: 485 DQLFGGGNSPAFAVAALAAFASGLIAILALPRSGAQNPRNLT 526

[Close]
BLAST of Carg08256 vs. ExPASy TrEMBL
Match: A0A2P5D4V7 (Sucrose/H+ symporter OS=Parasponia andersonii OX=3476 GN=PanSUT3 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKPRTLT 75
           DQLFGGGNSPALA+AA+AAFASGL+AILA+PRS AQKPR +T
Sbjct: 459 DQLFGGGNSPALAVAAVAAFASGLVAILAIPRSGAQKPRAVT 500

[Close]
BLAST of Carg08256 vs. TAIR 10
Match: AT1G09960.1 (sucrose transporter 4 )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALPRSTAQKP 71
           DQLFGGGNSPALA+ A   F  G++AILALPR+  QKP
Sbjct: 469 DQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKP 506

[Close]
BLAST of Carg08256 vs. TAIR 10
Match: AT2G02860.2 (sucrose transporter 2 )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALP 64
           DQLFGGGN PA  LA++AAFA+G+IA+  LP
Sbjct: 420 DQLFGGGNLPAFVLASVAAFAAGVIALQRLP 450

[Close]
BLAST of Carg08256 vs. TAIR 10
Match: AT2G02860.1 (sucrose transporter 2 )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 33  DQLFGGGNSPALALAALAAFASGLIAILALP 64
           DQLFGGGN PA  LA++AAFA+G+IA+  LP
Sbjct: 550 DQLFGGGNLPAFVLASVAAFAAGVIALQRLP 580

The following BLAST results are available for this feature:
BLAST of Carg08256 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029694.14.7e-29100.00Sucrose transport protein SUC4, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
KAG6598754.12.0e-1197.73Sucrose transport protein SUC4, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022131413.11.8e-0992.86sucrose transport protein SUC4 isoform X2 [Momordica charantia][more]
XP_022131412.11.8e-0992.86sucrose transport protein SUC4 isoform X1 [Momordica charantia][more]
XP_038884731.11.2e-0888.10sucrose transport protein SUC4 isoform X1 [Benincasa hispida][more]
BLAST of Carg08256 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FE591.5e-0668.42Sucrose transport protein SUC4 OS=Arabidopsis thaliana OX=3702 GN=SUC4 PE=1 SV=2[more]
A2ZN778.3e-0569.70Sucrose transport protein SUT2 OS=Oryza sativa subsp. indica OX=39946 GN=SUT2 PE... [more]
Q0ILJ38.3e-0569.70Sucrose transport protein SUT2 OS=Oryza sativa subsp. japonica OX=39947 GN=SUT2 ... [more]
BLAST of Carg08256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BQY18.9e-1092.86sucrose transport protein SUC4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1BT998.9e-1092.86sucrose transport protein SUC4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC1... [more]
B6V3B61.3e-0888.10Sucrose transporter OS=Cucumis melo OX=3656 GN=SUT4 PE=2 SV=1[more]
A0A1S3BBL21.3e-0888.10sucrose transport protein SUC4 isoform X1 OS=Cucumis melo OX=3656 GN=SUT4 PE=3 S... [more]
A0A2P5D4V71.3e-0883.33Sucrose/H+ symporter OS=Parasponia andersonii OX=3476 GN=PanSUT3 PE=3 SV=1[more]
BLAST of Carg08256 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G09960.11.1e-0768.42sucrose transporter 4 [more]
AT2G02860.21.9e-0467.74sucrose transporter 2 [more]
AT2G02860.11.9e-0467.74sucrose transporter 2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08256-RACarg08256-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0015770 sucrose transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005887 integral component of plasma membrane
cellular_component GO:0005773 vacuole
molecular_function GO:0008506 sucrose:proton symporter activity