Carg08216 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTTGCTCTCCCCTCTCCTCTGCTCACCAATTTCGAAATCCAGATCTCCGGAGTTTCATTTACGGAGAATTCCAATCATGGGAACCGACGGTGAAATCCGAAGAAAACCTAGATTTCTTTGCCTCCATGGCTTCCGAACCAGTGGAGCAATCCTTAAGAAGCAGGTCGGAAAATGGCCGGATTCTGTCCTTGAACAACTCGATCTGGATTTTCTCGATGCTCCATTTCCTGCCGAAGGCAAATCTGACATCGAAGGAATTTTTGATCCTCCCTATTTTGAGTGGTTTCAATTCAGTCCAGTACGACTGCTTAACCCTAATTTCTTCCGAAAATCGCAAACTCTCGTTTATTTTGTTTGTTTATTCTCTTTTCTTCCATTGCAGGAATTTACAGAGTATAGGAATTTCGATGAGTGTCTCTCATTCATTGAGGATTACATGCTTAAGCACGGACCATTCGATGGATTCCTCGGTTTCTCACAGGTAATTTCCTTTTAATTTTTCCTAATTAGCCAAACGGAGCTTAATCGAGTATCCTGTTGATGAACTTCGTTGAATTTGACAATTTCAATCTCTTCGCGAACAATTTCAGGGGGCGATACTATCGGCCGCTCTGCCGGGACTTCAAGCGAAGGTAACCTAACAGCAGCCTGCTGCTATTACGTTACAAATCCATCTGAATTCTCCAAAATAAACGTTAAAAGTGAAATCGAGGTTTTGAGGCAGAGGTGCATTAATTGTTGCAGGGTATTGCACTGACGAAAGTCCCCAAGATCAAATTCGTGATCATCGTCAGCGGTGCGAAATTCAGATCGCAATCTGTGGCTGAGAAAGCTTACTCGCCAGTCATTGGATGCCCATCCCTCCATTTTCTAGGTACCTCCTCCACATGGCGTTTGTCCTTTTTTGAAAGTAGTTTCCAATATAATGATTCTTTACATCGTTGCTTTGAAAACAAACAAGCCACCGAATGCATAATTTTAGGCATTTAGTTTTGGAATTAAATAACAGCTTGTCTTAATTTCTTGAATTACGTCCTAGGAGTCGAACAATCCATCATATTTTATGCATCAAAATAATTATAGACAGTTGACAATTCAAATTAAGGAGGTTGTTATGAATGTATTATTAAAAAATGTGAACGGACAATACTTTGATTGGTCTTTTTTTTCAAAAATAAGAGAATCAAATCCCTAAATTCTTAGGTGGGTATCACTTTAAAACTCCAAATAGCGCAAAACTTCACTAATTGAATCAATTTAGACATCCAATCCATTATAGACTTTCATTTTAAAGCCATTGATGCAAGAGTTCTTAAGATCCCTTGATTTGATATTTTCCTTTGATTATATGAACTGTTTAGATTCTTGAATTTAAAATTTGAAATAAATTAATCAACTTCTAGAACCTGTGTGTGAAATGCTGAAAAGGGTTATATCATGGTGGTAGGTAAGGAAGATTTCTTGATGCCCCACGGACAGAAGCTTCTGGAATCATATATAGATCCAGTAATAATTAATCATCCTAAAGGCCACACAATACCAAGACTGGGTAATATACAATTTCAACTCATTTCACTTTTCCATCCTTAATTTCTGATGCTGATTTAATTATCTCAACTTTATATTTTCAGATGATGAAGGTTTGGAGGTTATGGAGAGTTTCATTGAGAAGATTTCAAAGATGTTGGATGAGGCAGAAGAATAATAATAGTCTTAAAAGTCGCATTGGACTATCAATTATGCAGCCTTAGCCTTAAACAATGATGGAGCTAATTGTATAGTTCATTCGATGTATTTTATTTTAAATATTTCAAAACTATTCTCTCCGTAGGGTTGAGCCCTTGTATTCCATCAAGTGTTACACATCATTAATCTTACACACAACAAGTAATTTGTCATAGTTTCTGGATCTGTCTTGTGTATAATTAGTAATCTTTTATGGTTCCGAGGGTTTATGGTAAATTTGCCCCAAGGATAAGACAAATACATAATGAGAATTTTCTTACC ATGAGTTTGCTCTCCCCTCTCCTCTGCTCACCAATTTCGAAATCCAGATCTCCGGAGTTTCATTTACGGAGAATTCCAATCATGGGAACCGACGGTGAAATCCGAAGAAAACCTAGATTTCTTTGCCTCCATGGCTTCCGAACCAGTGGAGCAATCCTTAAGAAGCAGGTCGGAAAATGGCCGGATTCTGTCCTTGAACAACTCGATCTGGATTTTCTCGATGCTCCATTTCCTGCCGAAGGCAAATCTGACATCGAAGGAATTTTTGATCCTCCCTATTTTGAGTGGTTTCAATTCAGTCCAGAATTTACAGAGTATAGGAATTTCGATGAGTGTCTCTCATTCATTGAGGATTACATGCTTAAGCACGGACCATTCGATGGATTCCTCGGTTTCTCACAGGGGGCGATACTATCGGCCGCTCTGCCGGGACTTCAAGCGAAGGGTATTGCACTGACGAAAGTCCCCAAGATCAAATTCGTGATCATCGTCAGCGGTGCGAAATTCAGATCGCAATCTGTGGCTGAGAAAGCTTACTCGCCAGTCATTGGATGCCCATCCCTCCATTTTCTAGATGATGAAGGTTTGGAGGTTATGGAGAGTTTCATTGAGAAGATTTCAAAGATGTTGGATGAGGCAGAAGAATAATAATAGTCTTAAAAGTCGCATTGGACTATCAATTATGCAGCCTTAGCCTTAAACAATGATGGAGCTAATTGTATAGTTCATTCGATGTATTTTATTTTAAATATTTCAAAACTATTCTCTCCGTAGGGTTGAGCCCTTGTATTCCATCAAGTGTTACACATCATTAATCTTACACACAACAAGTAATTTGTCATAGTTTCTGGATCTGTCTTGTGTATAATTAGTAATCTTTTATGGTTCCGAGGGTTTATGGTAAATTTGCCCCAAGGATAAGACAAATACATAATGAGAATTTTCTTACC ATGAGTTTGCTCTCCCCTCTCCTCTGCTCACCAATTTCGAAATCCAGATCTCCGGAGTTTCATTTACGGAGAATTCCAATCATGGGAACCGACGGTGAAATCCGAAGAAAACCTAGATTTCTTTGCCTCCATGGCTTCCGAACCAGTGGAGCAATCCTTAAGAAGCAGGTCGGAAAATGGCCGGATTCTGTCCTTGAACAACTCGATCTGGATTTTCTCGATGCTCCATTTCCTGCCGAAGGCAAATCTGACATCGAAGGAATTTTTGATCCTCCCTATTTTGAGTGGTTTCAATTCAGTCCAGAATTTACAGAGTATAGGAATTTCGATGAGTGTCTCTCATTCATTGAGGATTACATGCTTAAGCACGGACCATTCGATGGATTCCTCGGTTTCTCACAGGGGGCGATACTATCGGCCGCTCTGCCGGGACTTCAAGCGAAGGGTATTGCACTGACGAAAGTCCCCAAGATCAAATTCGTGATCATCGTCAGCGGTGCGAAATTCAGATCGCAATCTGTGGCTGAGAAAGCTTACTCGCCAGTCATTGGATGCCCATCCCTCCATTTTCTAGATGATGAAGGTTTGGAGGTTATGGAGAGTTTCATTGAGAAGATTTCAAAGATGTTGGATGAGGCAGAAGAATAA MSLLSPLLCSPISKSRSPEFHLRRIPIMGTDGEIRRKPRFLCLHGFRTSGAILKKQVGKWPDSVLEQLDLDFLDAPFPAEGKSDIEGIFDPPYFEWFQFSPEFTEYRNFDECLSFIEDYMLKHGPFDGFLGFSQGAILSAALPGLQAKGIALTKVPKIKFVIIVSGAKFRSQSVAEKAYSPVIGCPSLHFLDDEGLEVMESFIEKISKMLDEAEE Homology
BLAST of Carg08216 vs. NCBI nr
Match: KAG7029656.1 (dfr1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 437.2 bits (1123), Expect = 8.3e-119 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
BLAST of Carg08216 vs. NCBI nr
Match: XP_022961839.1 (dihydrofolate reductase-like [Cucurbita moschata]) HSP 1 Score: 416.0 bits (1068), Expect = 2.0e-112 Identity = 213/249 (85.54%), Postives = 214/249 (85.94%), Query Frame = 0
BLAST of Carg08216 vs. NCBI nr
Match: XP_023545459.1 (dihydrofolate reductase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 407.5 bits (1046), Expect = 7.0e-110 Identity = 209/249 (83.94%), Postives = 211/249 (84.74%), Query Frame = 0
BLAST of Carg08216 vs. NCBI nr
Match: XP_022997250.1 (dihydrofolate reductase-like [Cucurbita maxima]) HSP 1 Score: 407.1 bits (1045), Expect = 9.2e-110 Identity = 208/249 (83.53%), Postives = 211/249 (84.74%), Query Frame = 0
BLAST of Carg08216 vs. NCBI nr
Match: KAG6598716.1 (hypothetical protein SDJN03_08494, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 367.9 bits (943), Expect = 6.2e-98 Identity = 188/222 (84.68%), Postives = 188/222 (84.68%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy Swiss-Prot
Match: P36591 (Dihydrofolate reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dfr1 PE=2 SV=2) HSP 1 Score: 79.0 bits (193), Expect = 7.5e-14 Identity = 53/167 (31.74%), Postives = 80/167 (47.90%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy Swiss-Prot
Match: Q94AC1 (Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=STR6 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 8.3e-13 Identity = 58/183 (31.69%), Postives = 83/183 (45.36%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy Swiss-Prot
Match: Q9VDL1 (Esterase CG5412 OS=Drosophila melanogaster OX=7227 GN=CG5412 PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10 Identity = 57/192 (29.69%), Postives = 85/192 (44.27%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy Swiss-Prot
Match: Q3SZ07 (Esterase OVCA2 OS=Bos taurus OX=9913 GN=OVCA2 PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.7e-10 Identity = 54/172 (31.40%), Postives = 73/172 (42.44%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy Swiss-Prot
Match: Q29BR3 (Esterase GA18864 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA18864 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09 Identity = 52/167 (31.14%), Postives = 75/167 (44.91%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy TrEMBL
Match: A0A6J1HF66 (dihydrofolate reductase-like OS=Cucurbita moschata OX=3662 GN=LOC111462484 PE=4 SV=1) HSP 1 Score: 416.0 bits (1068), Expect = 9.6e-113 Identity = 213/249 (85.54%), Postives = 214/249 (85.94%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy TrEMBL
Match: A0A6J1K928 (dihydrofolate reductase-like OS=Cucurbita maxima OX=3661 GN=LOC111492210 PE=4 SV=1) HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110 Identity = 208/249 (83.53%), Postives = 211/249 (84.74%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy TrEMBL
Match: A0A1S3BC97 (dihydrofolate reductase-like OS=Cucumis melo OX=3656 GN=LOC103488098 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 3.9e-90 Identity = 176/249 (70.68%), Postives = 190/249 (76.31%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy TrEMBL
Match: A0A0A0LNX4 (FSH1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G369800 PE=4 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 4.8e-88 Identity = 173/244 (70.90%), Postives = 186/244 (76.23%), Query Frame = 0
BLAST of Carg08216 vs. ExPASy TrEMBL
Match: A0A6J1BPA7 (dihydrofolate reductase-like OS=Momordica charantia OX=3673 GN=LOC111004563 PE=4 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 3.4e-86 Identity = 172/255 (67.45%), Postives = 188/255 (73.73%), Query Frame = 0
BLAST of Carg08216 vs. TAIR 10
Match: AT4G24380.1 (INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 246.5 bits (628), Expect = 1.9e-65 Identity = 118/182 (64.84%), Postives = 144/182 (79.12%), Query Frame = 0
BLAST of Carg08216 vs. TAIR 10
Match: AT4G24380.2 (CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 245.0 bits (624), Expect = 5.6e-65 Identity = 115/165 (69.70%), Postives = 136/165 (82.42%), Query Frame = 0
BLAST of Carg08216 vs. TAIR 10
Match: AT5G65400.1 (alpha/beta-Hydrolases superfamily protein ) HSP 1 Score: 237.7 bits (605), Expect = 9.0e-63 Identity = 113/206 (54.85%), Postives = 148/206 (71.84%), Query Frame = 0
BLAST of Carg08216 vs. TAIR 10
Match: AT1G09280.1 (CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). ) HSP 1 Score: 75.5 bits (184), Expect = 5.9e-14 Identity = 58/183 (31.69%), Postives = 83/183 (45.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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