Carg08193 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08193
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein 38-like
Location	Carg_Chr05: 2583266 .. 2584691 (+)
RNA-Seq Expression	Carg08193
Synteny	Carg08193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAAATTTCTCCAACACTCACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCATGATAAGAACACCGGCAAATCCAAAGGCTACGGATTCGTAAGTGTTCCTTAATTCCTTCGATTTGTCGTTTTTTTTTTTAAATTTAATTTAATTTTTTTTGTTCCAATTAATTAGGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGCGCTCGTCCTCCGCCGCCCCCGCCGCTGCTACTTGGAGGTTTCCACCCCGATCGCCTCCGTACCTGAATTAACTTTCGTTAATTTTTTAATTGGTTGACATTTTAAATTGGTGGAATTGTACAGGACGAAATCAAATTGGGAATCTTCAAACTACAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCTCCGCCGCCGCCGCAGATCATGTTCCCAGCATATAGGTACGTTTGCATGGTCCTGCATCACCCAACAGTGCTTTGGACGGCGACAACTTTTTAAGGAAAAACCATTTTGCTCGACAAGAAGTCAAATGTTTATCCAATTTCAGAAAAAAAAAAAAAAAAAAAAGGCTTGTTCTTATCCTTTTTATTTTTTATTATTTTTTTAATTTTTTAATTTTAATTTTTTGTTGCAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGTAGGCCATTTTCTCTTAATTTTCAGTTTTTTTCTTTTTTTTTTTTAATTTTTATTTTGGTCCCACAACTTTTTCTATTTTTAATTTTTTAATATCTATTTTAATTCTTCAACCGTCAATTATTGACATAATTTTCACCCTCATCATTGTATACTGACCTAAACAAAGTGAGCATAAGATACTATTTGACTCGAGATAGGTTGACCCAATGTTTAATACCCTAACTCCATGGTTCACATGGTTCAGTTCTTAAGCTTGATTCATTGCACTAACATGTACTTGTTTTGACAGGCTATTTATAACCCACAGCTTCAATCGGCTCAGTTGTACCAGCACCAACAGTCGCCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATCCATCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGGGCATGGTCCTTCTTCTCCATTGTCATCCTCACCGTCCTACTTCCCTTACTATACAAATTACACCCACATGCAACAGCCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAAATTTATATAA

mRNA sequence

ATGGCTGAAAATTTCTCCAACACTCACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCATGATAAGAACACCGGCAAATCCAAAGGCTACGGATTCGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGCGCTCGTCCTCCGCCGCCCCCGCCGCTGCTACTTGGAGGACGAAATCAAATTGGGAATCTTCAAACTACAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCTCCGCCGCCGCCGCAGATCATGTTCCCAGCATATAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGCTATTTATAACCCACAGCTTCAATCGGCTCAGTTGTACCAGCACCAACAGTCGCCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATCCATCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGGGCATGGTCCTTCTTCTCCATTGTCATCCTCACCGTCCTACTTCCCTTACTATACAAATTACACCCACATGCAACAGCCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAAATTTATATAA

Coding sequence (CDS)

ATGGCTGAAAATTTCTCCAACACTCACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCATGATAAGAACACCGGCAAATCCAAAGGCTACGGATTCGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGCGCTCGTCCTCCGCCGCCCCCGCCGCTGCTACTTGGAGGACGAAATCAAATTGGGAATCTTCAAACTACAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCTCCGCCGCCGCCGCAGATCATGTTCCCAGCATATAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGCTATTTATAACCCACAGCTTCAATCGGCTCAGTTGTACCAGCACCAACAGTCGCCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATCCATCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGGGCATGGTCCTTCTTCTCCATTGTCATCCTCACCGTCCTACTTCCCTTACTATACAAATTACACCCACATGCAACAGCCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAAATTTATATAA

Protein sequence

MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYTNYTHMQQPLFYAHMHQIATPTTGKFI

Homology

[Close]

BLAST of Carg08193 vs. NCBI nr
Match: KAG7029634.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 541.6 bits (1394), Expect = 3.7e-150
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180

Query: 181 HQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYTNYTHMQQP 240
           HQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYTNYTHMQQP
Sbjct: 181 HQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYTNYTHMQQP 240

Query: 241 LFYAHMHQIATPTTGKFI 259
           LFYAHMHQIATPTTGKFI
Sbjct: 241 LFYAHMHQIATPTTGKFI 258

[Close]

BLAST of Carg08193 vs. NCBI nr
Match: KAG6598692.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 526.9 bits (1356), Expect = 9.5e-146
Identity = 254/264 (96.21%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLT--------PYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ 180
           TSAAAGSYGGLLT        PYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ 180

Query: 181 LQSAQLYQHQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYT 240
           LQSAQLYQHQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYT
Sbjct: 181 LQSAQLYQHQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYT 240

Query: 241 NYTHMQQPLFYAHMHQIATPTTGK 257
           NYTHMQQPLFYAHMHQIATPT G+
Sbjct: 241 NYTHMQQPLFYAHMHQIATPTPGR 264

[Close]

BLAST of Carg08193 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 515.0 bits (1325), Expect = 3.7e-142
Identity = 251/262 (95.80%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY- 180

Query: 181 HQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG------PSSPLSSSPSYFPYYTNY 240
             QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG      PSSPLSSSPSYFPYYTNY
Sbjct: 181 -PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGK 257
           THMQQPLFYAHMHQIATPTTG+
Sbjct: 241 THMQQPLFYAHMHQIATPTTGR 260

[Close]

BLAST of Carg08193 vs. NCBI nr
Match: XP_023546076.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.1 bits (1315), Expect = 5.4e-141
Identity = 251/264 (95.08%), Postives = 252/264 (95.45%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
            SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 
Sbjct: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY- 180

Query: 181 HQQSPCSSS--YGYGYGYPSSSSPSPRGAFPVHGY------GHGPSSPLSSSPSYFPYYT 240
            Q SPCSSS  YGYGYGYPSSSSPSPRGAFPVHGY      GHGPSSPLSSSPSYFPYYT
Sbjct: 181 -QPSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYT 240

Query: 241 NYTHMQQPLFYAHMHQIATPTTGK 257
           NYTHMQQPLFYAHMHQIATPTTG+
Sbjct: 241 NYTHMQQPLFYAHMHQIATPTTGR 262

[Close]

BLAST of Carg08193 vs. NCBI nr
Match: XP_022961977.1 (RNA-binding protein 38-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 490.0 bits (1260), Expect = 1.3e-134
Identity = 242/262 (92.37%), Postives = 243/262 (92.75%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ         AQLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ---------AQLY- 180

Query: 181 HQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG------PSSPLSSSPSYFPYYTNY 240
             QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG      PSSPLSSSPSYFPYYTNY
Sbjct: 181 -PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGK 257
           THMQQPLFYAHMHQIATPTTG+
Sbjct: 241 THMQQPLFYAHMHQIATPTTGR 251

[Close]

BLAST of Carg08193 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-23
Identity = 81/206 (39.32%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G      P  L  G    +  L  T     +YG  LTP
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAVGVQQLHPT-LIQRTYG--LTP 147

Query: 135 ---YPPP--------PSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQQ 194
              YPP         P+ P P +  P   Y   +P Y   Y  A Y+        Y +  
Sbjct: 148 HYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYA-QYPPATYDQ-------YPYAA 207

Query: 195 SPCSSSYGYGYGYPSSSSPSPRGAFP 210
           SP +++   GYGYP++   +   A P
Sbjct: 208 SPAAATSFVGYGYPAAVPQALSAAAP 218

[Close]

BLAST of Carg08193 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 6.2e-23
Identity = 80/206 (38.83%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G      P  L  G    +  L  T     +YG  LTP
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAIGVQQLHPT-LIQRTYG--LTP 149

Query: 135 ---YPPP--------PSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQQ 194
              YPP         P+ P P +  P   Y   +P Y   Y  A Y+        Y +  
Sbjct: 150 HYIYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYA-QYPPATYDQ-------YPYAA 209

Query: 195 SPCSSSYGYGYGYPSSSSPSPRGAFP 210
           SP +++   GY YP++   +   A P
Sbjct: 210 SPATAASFVGYSYPAAVPQALSAAAP 220

[Close]

BLAST of Carg08193 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 73/186 (39.25%), Postives = 97/186 (52.15%), Query Frame = 0


Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G        P  L     IG  Q   A      GL   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQ 126

Query: 135 YPPPPSPPPPQIMFPAYRYRSYAPNYTLPY------HQAIYNPQLQSAQLYQHQQSPCSS 194
           Y  PP+   P ++ P     +  P+   PY       QA  +    + + Y +  SP + 
Sbjct: 127 YIYPPAIVQPSVVIP-----TPIPSLQSPYIDYNAATQAFTHYTTAAYEQYPYAASPATG 181

[Close]

BLAST of Carg08193 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-22
Identity = 77/211 (36.49%), Postives = 110/211 (52.13%), Query Frame = 0


Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FGEI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G A+P    P    G  QI       A      G+ T 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRVMQPGFTFGVPQI-----HPAFIQRPYGIPTH 126

Query: 135 YPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQQSPCSSSYGYGY 194
           Y  P +   P ++ P  +  + +   + PY          +   Y    S  +++    Y
Sbjct: 127 YVYPQAFMQPSVVIPHIQPTATSATASSPYID-------YTGAAYAQYASAATAAAAAAY 186

Query: 195 -GYPSSSSPSPRGAFPVHGYGHGPSSPLSSS 225
             YP ++SP+  G     GYG+    PL+++
Sbjct: 187 EQYPYAASPAATGYVAAAGYGYAMQQPLATA 204

[Close]

BLAST of Carg08193 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 0


Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G A+P    P    G  QI       A      G+   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQI-----HPALIQRPFGIPAH 126

Query: 135 YPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQQSPCSSSYGYGY 194
           Y  P +   P ++ P    +  A   T PY          SA   Q+  +  +++Y    
Sbjct: 127 YVYPQAYVQPGVVIP--HVQPTAATSTSPY------IDYTSAAYAQYSAAAAAAAYDQ-- 186

Query: 195 GYPSSSSPSPRGAFPVHGYGHGPSSPLSSS 225
            YP ++SP+  G     GYG+    PL+++
Sbjct: 187 -YPYAASPAATGYVTAAGYGYAVPQPLTAA 199

[Close]

BLAST of Carg08193 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.8e-142
Identity = 251/262 (95.80%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY- 180

Query: 181 HQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG------PSSPLSSSPSYFPYYTNY 240
             QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG      PSSPLSSSPSYFPYYTNY
Sbjct: 181 -PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGK 257
           THMQQPLFYAHMHQIATPTTG+
Sbjct: 241 THMQQPLFYAHMHQIATPTTGR 260

[Close]

BLAST of Carg08193 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 6.2e-135
Identity = 242/262 (92.37%), Postives = 243/262 (92.75%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ         AQLY 
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ---------AQLY- 180

Query: 181 HQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG------PSSPLSSSPSYFPYYTNY 240
             QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG      PSSPLSSSPSYFPYYTNY
Sbjct: 181 -PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGK 257
           THMQQPLFYAHMHQIATPTTG+
Sbjct: 241 THMQQPLFYAHMHQIATPTTGR 251

[Close]

BLAST of Carg08193 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.3e-129
Identity = 235/261 (90.04%), Postives = 238/261 (91.19%), Query Frame = 0


Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNL T
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLHT 120

Query: 121 TSAAAGSYGGLLTPYPPPP-SPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 180
           TSAAA S+GGLLTPYPPPP SPPPPQIMFPAYRYRSYAPNYTLPYHQ    PQL      
Sbjct: 121 TSAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYHQ----PQL------ 180

Query: 181 QHQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYG----HGPSSPLSSSPSYFPYYTNYT 240
            +QQSPCSSSYGY YGYPSSSS SPR AFPVHGYG    HGPSSPLSSSPSYFPYYTNYT
Sbjct: 181 -YQQSPCSSSYGYAYGYPSSSSQSPRVAFPVHGYGHGHAHGPSSPLSSSPSYFPYYTNYT 240

Query: 241 HMQQPLFYAHMHQIATPTTGK 257
           HMQQPLFYAHMH IATP TG+
Sbjct: 241 HMQQPLFYAHMHPIATPITGR 250

[Close]

BLAST of Carg08193 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.7e-93
Identity = 191/262 (72.90%), Postives = 205/262 (78.24%), Query Frame = 0


Query: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 61
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSK
Sbjct: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63

Query: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 121
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+
Sbjct: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSP-SSGGRNQIGNLQS 123

Query: 122 TS-AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 181
           TS AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+Y
Sbjct: 124 TSPAAAGSYGGLRPPF------PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMY 183

Query: 182 QHQQSP---CSSSYGYGYGYPSSSSPS--PRGAFPVHGYGHGPSSPLSSSPSYFPYYTNY 241
           Q   SP    SSSY YGYGY SS S S  PR AF VH  GH P      SPSYFPYYTNY
Sbjct: 184 QQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVH--GHPP-----QSPSYFPYYTNY 243

Query: 242 THMQQP--LFYAHMHQIATPTT 255
           THMQQ   LFY  M QI TP+T
Sbjct: 244 THMQQQAGLFYTPMPQIITPST 251

[Close]

BLAST of Carg08193 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91
Identity = 188/259 (72.59%), Postives = 202/259 (77.99%), Query Frame = 0


Query: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGY 63
           NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSKGY
Sbjct: 6   NFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 65

Query: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTS 123
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+T+
Sbjct: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSP-SSGGRNQIGNLQSTA 125

Query: 124 -AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQH 183
            AAAGSYGGL  P+PPPP      ++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+YQ 
Sbjct: 126 PAAAGSYGGLRPPFPPPP------LIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQ 185

Query: 184 QQSP---CSSSYGYGYGYPSSSSPS--PRGAFPVHGYGHGPSSPLSSSPSYFPYYTNYTH 243
             SP    SSSY Y YGY SS S S  PR AF VH  GH P      SPSYFPYYTNYTH
Sbjct: 186 SPSPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVH--GHPP-----QSPSYFPYYTNYTH 245

Query: 244 MQQP-LFYAHMHQIATPTT 255
           MQQ  L Y  M QI TP+T
Sbjct: 246 MQQQGLVYTPMPQIITPST 250

[Close]

BLAST of Carg08193 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-53
Identity = 126/242 (52.07%), Postives = 152/242 (62.81%), Query Frame = 0


Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWET +DEMR +F+QFGEILEAVII DKNTGKSKGYGFVTFR+ D
Sbjct: 10  PFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTTSAAAGSYGG 131
           SA RA A+PNP+I GR+ANCNIA+FGR RP PP      GR Q G+  Q  S    +Y G
Sbjct: 70  SATRAVADPNPVIDGRKANCNIASFGRPRPSPP-----RGRGQTGSPSQYQSGGPSTYTG 129

Query: 132 LLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQQSPCSSSY 191
           +  P PP  +   PQ+M+P+Y Y +Y P+    YHQA+YN QLQ AQ YQ QQ      Y
Sbjct: 130 MAAPLPPAAA---PQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQQ----QLY 189

Query: 192 GYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYFPYYTNYTHMQQPLFYAHMHQIA 251
           G G     ++SPS  GA              +  PS  PYY  Y+     + Y H H + 
Sbjct: 190 GGG-----ATSPSSSGA--------------TIMPS--PYYYGYSLQAPRVPYQHHHHLP 216

Query: 252 TP 253
            P
Sbjct: 250 QP 216

[Close]

BLAST of Carg08193 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-52
Identity = 131/267 (49.06%), Postives = 164/267 (61.42%), Query Frame = 0


Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWET +DEMR +F+QFGEILEAVII DKNTGKSKGYGFVTFR+ D
Sbjct: 10  PFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTTSAAAGSYGG 131
           SA RA A+PNP+I GR+ANCNIA+FGR RP PP      GR Q G+  Q  S    +Y G
Sbjct: 70  SATRAVADPNPVIDGRKANCNIASFGRPRPSPP-----RGRGQTGSPSQYQSGGPSTYTG 129

Query: 132 LLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQQ------- 191
           +  P PP  +   PQ+M+P+Y Y +Y P+    YHQA+YN QLQ AQ YQ QQ       
Sbjct: 130 MAAPLPPAAA---PQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQQQLYGGGA 189

Query: 192 -SPCSSS-----YGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLS------SSPSYFPYY 251
            SP SS        Y YGY   S  +PR  +  H +   P +P        SSPS+  Y 
Sbjct: 190 TSPSSSGATIMPSPYYYGY---SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYP 249

Query: 252 TNYTHMQQPLFYAHMHQIATPTTGKFI 259
           +N +      F   +  + + +TG ++
Sbjct: 250 SNSS------FAPPLQGVLSSSTGTYL 257

[Close]

BLAST of Carg08193 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-46
Identity = 123/249 (49.40%), Postives = 142/249 (57.03%), Query Frame = 0


Query: 6   SNT--HPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYG 65
           SNT  +  PFGDTT TK+FVGGLAWET +DEMR +F QFGEILEAVII DK TGKSKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 66  FVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTTS 125
           FVTFRD DSA RA A+PNP+I GR+ANCNIA+FGR RP  P      GR Q G+  Q   
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTP-----RGRGQGGSPSQYQG 121

Query: 126 AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQHQ 185
               SY G+  P     +    Q+M+P+Y    Y  N    YHQA+YN QLQ AQ YQ Q
Sbjct: 122 GGQSSYTGMAAPVQQAAA---AQLMYPSY---GYTYNSEYGYHQALYNAQLQQAQYYQQQ 181

Query: 186 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGPSSPLSSSPSYF---PYYTNYTHMQQ 245
                      YG   ++SPS              SS +  SP Y+   P    Y H QQ
Sbjct: 182 M----------YGGGGATSPS--------------SSNIMPSPYYYLQAPSPRPYLHHQQ 215

Query: 246 PLFYAHMHQ 249
              Y H  Q
Sbjct: 242 HYQYHHHQQ 215

[Close]

BLAST of Carg08193 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 172.2 bits (435), Expect = 5.5e-43
Identity = 103/212 (48.58%), Postives = 129/212 (60.85%), Query Frame = 0


Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWETQS+ +R  F+Q+GEILEAV+I DKNTG+SKGYGFVTFRDP+
Sbjct: 17  PFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPE 76

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPP-------PPLLLGGRNQIGNLQTTSAA 131
           +ARRACA+P PII GRRANCN+A+ GR RPP P       P  L      IGN+Q     
Sbjct: 77  AARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQ----- 136

Query: 132 AGSYGGLLTPYP---PPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQH 191
            G  G L+  YP   P P      +++P Y   +Y P Y     Q +Y+P +    L  +
Sbjct: 137 -GPRGSLIGNYPYQQPLPYNYQQGVVYP-YGVTAYGPEYMYSQSQGLYSPYMGQQYLQVY 196

Query: 192 QQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGY 214
                 +S  Y YG  S + P+  G   V GY
Sbjct: 197 GVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGY 221

[Close]

BLAST of Carg08193 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-41
Identity = 107/250 (42.80%), Postives = 139/250 (55.60%), Query Frame = 0


Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWETQS+ +R  F Q+G+ILEAV+I DKNTG+SKGYGFVTFRDP+
Sbjct: 17  PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPE 76

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPP--------------PPPPLLLGGRNQIGN 131
           +ARRAC +P PII GRRANCN+A+ GR+RPP              PP P        +G+
Sbjct: 77  AARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP-------YVGS 136

Query: 132 LQTTSAA-AGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSA 191
           +Q+      GS+     PY  PP+    Q +   Y    Y P+Y     Q  Y P +   
Sbjct: 137 VQSPRGLHFGSH-----PYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQ 196

Query: 192 QLYQHQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGH--------GPSSPLSSSPSYF 239
            L  +      +S GY YG  S + P   G     GY H        G +SP+S+  S +
Sbjct: 197 YLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPY 254

The following BLAST results are available for this feature:

BLAST of Carg08193 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029634.1	3.7e-150	100.00	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598692.1	9.5e-146	96.21	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961976.1	3.7e-142	95.80	RNA-binding protein 38-like isoform X1 [Cucurbita moschata]	[more]
XP_023546076.1	5.4e-141	95.08	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961977.1	1.3e-134	92.37	RNA-binding protein 38-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg08193 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q62176	2.1e-23	39.32	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q9H0Z9	6.2e-23	38.83	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q6DIV4	1.4e-22	39.25	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]
Q76LC6	3.1e-22	36.49	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q6GQD3	4.0e-22	37.14	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]

BLAST of Carg08193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBU2	1.8e-142	95.80	RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HBJ1	6.2e-135	92.37	RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KAW8	2.3e-129	90.04	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=...	[more]
A0A1S3BBB0	2.7e-93	72.90	RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1	[more]
A0A0A0LLP2	1.9e-91	72.59	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV...	[more]

BLAST of Carg08193 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	2.7e-53	52.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	2.9e-52	49.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	1.1e-46	49.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	5.5e-43	48.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.0e-41	42.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 20..92 e-value: 1.6E-25 score: 100.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 21..79 e-value: 3.6E-18 score: 65.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 19..96 score: 16.466022
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..102 e-value: 4.4E-25 score: 90.2
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 10..235
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 19..94 e-value: 4.4895E-42 score: 136.591
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 10..235
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08193-RA	Carg08193-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding