Carg08191 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08191
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	methyl-CpG-binding domain-containing protein 8-like
Location	Carg_Chr05: 2574225 .. 2574884 (-)
RNA-Seq Expression	Carg08191
Synteny	Carg08191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAGAACTATGGTTGCTTCCCCTTCCAACGACAGTCTTCGCATGAACACTCTGCCGGTCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAGCGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTTTAGCCCCTCGCAAGCCCCAAATTTCTTCCTCCTCGTCCTCCTCCACATTTCGGTCCCAATCCTCCGACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGAGTAATGGAAATGCCGCTCCGAACTCCAAAAGCGGCTGCGAAAAACGGGCGGCGGCGACGGAGGAGGAGATCGTAATGGTAATGCTGTGA

mRNA sequence

ATGGCTTCCAGAACTATGGTTGCTTCCCCTTCCAACGACAGTCTTCGCATGAACACTCTGCCGGTCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAGCGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTTTAGCCCCTCGCAAGCCCCAAATTTCTTCCTCCTCGTCCTCCTCCACATTTCGGTCCCAATCCTCCGACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGAGTAATGGAAATGCCGCTCCGAACTCCAAAAGCGGCTGCGAAAAACGGGCGGCGGCGACGGAGGAGGAGATCGTAATGGTAATGCTGTGA

Coding sequence (CDS)

ATGGCTTCCAGAACTATGGTTGCTTCCCCTTCCAACGACAGTCTTCGCATGAACACTCTGCCGGTCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAGCGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTTTAGCCCCTCGCAAGCCCCAAATTTCTTCCTCCTCGTCCTCCTCCACATTTCGGTCCCAATCCTCCGACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGAGTAATGGAAATGCCGCTCCGAACTCCAAAAGCGGCTGCGAAAAACGGGCGGCGGCGACGGAGGAGGAGATCGTAATGGTAATGCTGTGA

Protein sequence

MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQLFVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGRPRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML

Homology

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BLAST of Carg08191 vs. NCBI nr
Match: KAG7029632.1 (Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.4 bits (1056), Expect = 5.0e-111
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 219

[Close]

BLAST of Carg08191 vs. NCBI nr
Match: KAG6598690.1 (Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405.6 bits (1041), Expect = 2.7e-109
Identity = 217/219 (99.09%), Postives = 217/219 (99.09%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVAS SNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASTTMVASHSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 219

[Close]

BLAST of Carg08191 vs. NCBI nr
Match: XP_022961982.1 (methyl-CpG-binding domain-containing protein 8-like [Cucurbita moschata])

HSP 1 Score: 401.7 bits (1031), Expect = 3.9e-108
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPSNDSLRMNTLP+IDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSS RLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQ NGNAAPNSKSGCEKRAAA EEEIVMVML
Sbjct: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 219

[Close]

BLAST of Carg08191 vs. NCBI nr
Match: XP_022997262.1 (methyl-CpG-binding domain-containing protein 8-like [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 4.3e-107
Identity = 211/219 (96.35%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPSND+LRMNTLP+IDLRRLSQSDLYCLSRFFSSSSSSTSQSN+DDDVLIPK
Sbjct: 1   MASTTMVASPSNDNLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ SSS SSSTFRSQSSDRLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQSNGNAAPNSKSGCEKRAA  EEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAEEEEEIVMVML 219

[Close]

BLAST of Carg08191 vs. NCBI nr
Match: XP_023546077.1 (methyl-CpG-binding domain-containing protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.2e-106
Identity = 213/219 (97.26%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVAS SNDSLRMNTLP+IDLRRLSQSDLYCLSRFFSSSSSSTSQSN+DDDVLIPK
Sbjct: 1   MASTTMVASSSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQSNGNAAPNSKSGCEKR AA EEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKR-AAEEEEIVMVML 218

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BLAST of Carg08191 vs. ExPASy Swiss-Prot
Match: Q9LME6 (Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.2e-16
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 11  SNDSLRMNTLPVIDLRRLSQSDLYCLSRFFS---SSSSSTSQSNSDDDVLIPKIDRSVFN 70
           + + L   +LP+ID R LSQS+L  LS+  S   SSS+S + S   DD L PKIDRSVFN
Sbjct: 17  AGNRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFN 76

Query: 71  ESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQLFVGDSHC 130
           ESAGSRKQT+ RLRLA R PQ      S   +   S R +    Q+ + L+ LF  DS+ 
Sbjct: 77  ESAGSRKQTFLRLRLA-RHPQPPEEPPSPQRQRDDSSREE--QTQVASLLRSLFNVDSNQ 136

Query: 131 AVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYGPIKRRRGRP 187
           +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   IKR+RGRP
Sbjct: 137 S-KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRP 192

[Close]

BLAST of Carg08191 vs. ExPASy TrEMBL
Match: A0A6J1HBJ5 (methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111462590 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.9e-108
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPSNDSLRMNTLP+IDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSS RLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQ NGNAAPNSKSGCEKRAAA EEEIVMVML
Sbjct: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 219

[Close]

BLAST of Carg08191 vs. ExPASy TrEMBL
Match: A0A6J1K4I5 (methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111492221 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 211/219 (96.35%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPSND+LRMNTLP+IDLRRLSQSDLYCLSRFFSSSSSSTSQSN+DDDVLIPK
Sbjct: 1   MASTTMVASPSNDNLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ SSS SSSTFRSQSSDRLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQSNGNAAPNSKSGCEKRAA  EEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAEEEEEIVMVML 219

[Close]

BLAST of Carg08191 vs. ExPASy TrEMBL
Match: A0A6J1BS27 (methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005043 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.6e-91
Identity = 187/219 (85.39%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPSN+S RMNTLP+IDLR LSQS+LYCLSR FSSSSSSTSQSN DDDVLIPK
Sbjct: 1   MASTTMVASPSNESFRMNTLPIIDLRLLSQSELYCLSR-FSSSSSSTSQSNDDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ  SSSSSS  R QS +RLD  SA+I+T  KQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFPSSSSSSVIRPQSPERLDAESAKIITLFKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHC V++SYGD DEDLVL+NHIYDESVPDSSYAIFQSIPVDIIDSSY PIKRRRGR
Sbjct: 121 FVGDSHCTVDNSYGDEDEDLVLINHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRF QSNGNA PNSKSGCEKR  A EEEIVMVML
Sbjct: 181 PRKDSNRFPQSNGNAVPNSKSGCEKR--AEEEEIVMVML 216

[Close]

BLAST of Carg08191 vs. ExPASy TrEMBL
Match: A0A6J1BV99 (methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005043 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 184/216 (85.19%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPSN+S RMNTLP+IDLR LSQS+LYCLSR FSSSSSSTSQSN DDDVLIPK
Sbjct: 1   MASTTMVASPSNESFRMNTLPIIDLRLLSQSELYCLSR-FSSSSSSTSQSNDDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ  SSSSSS  R QS +RLD  SA+I+T  KQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFPSSSSSSVIRPQSPERLDAESAKIITLFKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHC V++SYGD DEDLVL+NHIYDESVPDSSYAIFQSIPVDIIDSSY PIKRRRGR
Sbjct: 121 FVGDSHCTVDNSYGDEDEDLVLINHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVM 217
           PRKDSNRF QSNGNA PNSKSGCEKR  A EEEIVM
Sbjct: 181 PRKDSNRFPQSNGNAVPNSKSGCEKR--AEEEEIVM 213

[Close]

BLAST of Carg08191 vs. ExPASy TrEMBL
Match: A0A6J1KK67 (methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496461 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.4e-89
Identity = 184/219 (84.02%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPS+D  RMNTLP+IDLR LSQS+LYCLSRF SSSSSS SQSN+DDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSMSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRK Q  SSSSSST R QS DR D  SA+IVT  KQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVG+SHC VNDSY DGDEDLVLVNHIYDESVP+SSYAIF SIPVDIIDSSY PIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 220
           PRKDSNRFAQSNGNAA NS SGC+KR  A E+EIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKR--AEEDEIVMVML 217

[Close]

BLAST of Carg08191 vs. TAIR 10
Match: AT1G22310.2 (methyl-CPG-binding domain 8 )

HSP 1 Score: 85.5 bits (210), Expect = 5.8e-17
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 11  SNDSLRMNTLPVIDLRRLSQSDLYCLSRFFS---SSSSSTSQSNSDDDVLIPKIDRSVFN 70
           + + L   +LP+ID R LSQS+L  LS+  S   SSS+S + S   DD L PKIDRSVFN
Sbjct: 17  AGNRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFN 76

Query: 71  ESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQLFVGDSHC 130
           ESAGSRKQT+ RLRLA R PQ      S   +   S R +    Q+ + L+ LF  DS+ 
Sbjct: 77  ESAGSRKQTFLRLRLA-RHPQPPEEPPSPQRQRDDSSREE--QTQVASLLRSLFNVDSNQ 136

Query: 131 AVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYGPIKRRRGRP 187
           +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   IKR+RGRP
Sbjct: 137 S-KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRP 192

The following BLAST results are available for this feature:

BLAST of Carg08191 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029632.1	5.0e-111	100.00	Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma ...	[more]
KAG6598690.1	2.7e-109	99.09	Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma ...	[more]
XP_022961982.1	3.9e-108	97.72	methyl-CpG-binding domain-containing protein 8-like [Cucurbita moschata]	[more]
XP_022997262.1	4.3e-107	96.35	methyl-CpG-binding domain-containing protein 8-like [Cucurbita maxima]	[more]
XP_023546077.1	2.2e-106	97.26	methyl-CpG-binding domain-containing protein 8-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg08191 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LME6	8.2e-16	41.08	Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg08191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBJ5	1.9e-108	97.72	methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1K4I5	2.1e-107	96.35	methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1BS27	3.6e-91	85.39	methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Momordica charantia...	[more]
A0A6J1BV99	1.2e-89	85.19	methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Momordica charantia...	[more]
A0A6J1KK67	4.4e-89	84.02	methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita maxi...	[more]

BLAST of Carg08191 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22310.2	5.8e-17	41.08	methyl-CPG-binding domain 8	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..207
None	No IPR available	PANTHER	PTHR37701:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 7..193
IPR037472	Methyl-CpG-binding domain-containing protein 8	PANTHER	PTHR37701	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 7..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08191-RA	Carg08191-RA	mRNA