Carg07915 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07915
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein L11
Location	Carg_Chr07: 1682393 .. 1682860 (+)
RNA-Seq Expression	Carg07915
Synteny	Carg07915

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTTTGAAAGAGATCCTAACTAGGCGACCCGTCGCCGCCACCATCAGGCTCACTGTCCCTGCCGGCGGAGCTCGGCCAGCGCCACCGGTGGGTCCGGCGCTTGGTAAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCACTGCCCGAACTCAGAAGTACAAGGCGGACACACCCATGGCCGTCACCATCACGGCTTTTAAGGACAACACCTTCGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAATCCGCCGGGATCGAGTCTGTGAGCGGCCGCCCAGGCCATGTGGTCGCCTCCACGCTCTCCCTCAAGCACATTTACGAGATCGCGAAAGTCGAGCAGTCCGATCCTTATTGCCAGTACATGCCATTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAACATGGGAATTAAGGTTGTTAAGGAATTGGATTGA

mRNA sequence

ATGGCCACTTTGAAAGAGATCCTAACTAGGCGACCCGTCGCCGCCACCATCAGGCTCACTGTCCCTGCCGGCGGAGCTCGGCCAGCGCCACCGGTGGGTCCGGCGCTTGGTAAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCACTGCCCGAACTCAGAAGTACAAGGCGGACACACCCATGGCCGTCACCATCACGGCTTTTAAGGACAACACCTTCGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAATCCGCCGGGATCGAGTCTGTGAGCGGCCGCCCAGGCCATGTGGTCGCCTCCACGCTCTCCCTCAAGCACATTTACGAGATCGCGAAAGTCGAGCAGTCCGATCCTTATTGCCAGTACATGCCATTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAACATGGGAATTAAGGTTGTTAAGGAATTGGATTGA

Coding sequence (CDS)

ATGGCCACTTTGAAAGAGATCCTAACTAGGCGACCCGTCGCCGCCACCATCAGGCTCACTGTCCCTGCCGGCGGAGCTCGGCCAGCGCCACCGGTGGGTCCGGCGCTTGGTAAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCACTGCCCGAACTCAGAAGTACAAGGCGGACACACCCATGGCCGTCACCATCACGGCTTTTAAGGACAACACCTTCGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAATCCGCCGGGATCGAGTCTGTGAGCGGCCGCCCAGGCCATGTGGTCGCCTCCACGCTCTCCCTCAAGCACATTTACGAGATCGCGAAAGTCGAGCAGTCCGATCCTTATTGCCAGTACATGCCATTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAACATGGGAATTAAGGTTGTTAAGGAATTGGATTGA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVEQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

Homology

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BLAST of Carg07915 vs. NCBI nr
Match: KAG7026702.1 (mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Sbjct: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 155

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BLAST of Carg07915 vs. NCBI nr
Match: XP_022926601.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 305.8 bits (782), Expect = 2.1e-79
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES SGRPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 155

[Close]

BLAST of Carg07915 vs. NCBI nr
Match: KAG6594732.1 (hypothetical protein SDJN03_11285, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVA TIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAPTIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSD YCQYMPLESICKSIIGTANNMGIKVVKELD
Sbjct: 121 KQSDLYCQYMPLESICKSIIGTANNMGIKVVKELD 155

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BLAST of Carg07915 vs. NCBI nr
Match: XP_023518358.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 2.8e-76
Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAA IRLTVPAGGARPAP VGPALG+YRLNLMAFCKDF ARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAAAIRLTVPAGGARPAPAVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTF+FTVKSPSVTWYLKKSAGIES SGRPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFKFTVKSPSVTWYLKKSAGIESGSGRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 155

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BLAST of Carg07915 vs. NCBI nr
Match: XP_023003939.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 295.4 bits (755), Expect = 2.8e-76
Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES S RPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDPYCQYMPLESICKSIIGTAN+ GIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSTGIKVVKELD 155

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BLAST of Carg07915 vs. ExPASy Swiss-Prot
Match: Q9UTK2 (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.4e-31
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 17  IRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+F ART  +  +TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVEQSDPYCQYMPLESIC 136
           FT+ +P  +W + K+  +E  S  P H +   LSLKHIYEIAK++ +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANNMGIKVV 152
           KS+IGTA +MG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

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BLAST of Carg07915 vs. ExPASy Swiss-Prot
Match: Q9VFJ2 (39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=mRpL11 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-26
Identity = 56/155 (36.13%), Postives = 95/155 (61.29%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           + +LK+ + R    + ++  +PAG A   PP+GP LG+  +N+ AFCKDF A+T + K  
Sbjct: 8   LKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEG 67

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
            P+   I+   D +++  +  P  T++LK++AGI+  +  PG  VA  ++LKH+YEIA +
Sbjct: 68  VPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKHLYEIAAI 127

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +  DP    + ++ +C+ +I  A   GIKVV+E+D
Sbjct: 128 KIQDPPNVLLTMQQMCEMLISIARTCGIKVVREID 162

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BLAST of Carg07915 vs. ExPASy Swiss-Prot
Match: Q9Y3B7 (39S ribosomal protein L11, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL11 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-26
Identity = 62/149 (41.61%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 8   LTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTI 67
           L +  V   IR  V AG A P PP+GP LG+  +++  FCK+F  RT+  K   P+   I
Sbjct: 11  LRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKI 70

Query: 68  TAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVEQSDP-- 127
               D TFE  +  P+V+++LK +AGIE  + + G  VA  ++LKH+YEIA+++  D   
Sbjct: 71  LVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAF 130

Query: 128 YCQYMPLESICKSIIGTANNMGIKVVKEL 155
             Q +PL S+ +SIIG+A ++GI+VVK+L
Sbjct: 131 ALQDVPLSSVVRSIIGSARSLGIRVVKDL 159

[Close]

BLAST of Carg07915 vs. ExPASy Swiss-Prot
Match: Q07KJ7 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=rplK PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 59/140 (42.14%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALG+  LN+M FCK+F A+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVEQSDPYCQYM 130
            D +F F +K+P ++++LK++A I+S S  PG  VA  +S   + EIA+ +  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANNMGIKV 151
            +ES  + + G+A +MG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]

BLAST of Carg07915 vs. ExPASy Swiss-Prot
Match: A7HWQ0 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplK PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-25
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALG+  LN+M FCK F A TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVEQSDPYCQYM 130
            D +F F +K+P  +++LKK+A + S S  PG   A T+++    EIA+ + +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANNMGIKVVK 153
            L+   K I G+A +MG++VV+
Sbjct: 123 DLDQATKIIAGSARSMGLQVVE 142

[Close]

BLAST of Carg07915 vs. ExPASy TrEMBL
Match: A0A6J1EFD1 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111433682 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES SGRPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 155

[Close]

BLAST of Carg07915 vs. ExPASy TrEMBL
Match: A0A6J1KUS1 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111497382 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES S RPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDPYCQYMPLESICKSIIGTAN+ GIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSTGIKVVKELD 155

[Close]

BLAST of Carg07915 vs. ExPASy TrEMBL
Match: A0A6J1IPM9 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111477675 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 146/155 (94.19%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK D
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGIES SGRPGHVVASTL+LKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDPYCQYMPLESICKSIIGTAN+MGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Carg07915 vs. ExPASy TrEMBL
Match: A0A6J1BU21 (54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005691 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGI+S S RPGHVVASTLSLKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDPYCQYMPLESICKSIIGTAN+MGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Carg07915 vs. ExPASy TrEMBL
Match: A0A6J1GG89 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111453660 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 144/155 (92.90%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK D
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGIES SGRPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 EQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           +QSDP+CQYMPLESICKSIIGTAN+MGIKVVKELD
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Carg07915 vs. TAIR 10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11 )

HSP 1 Score: 257.7 bits (657), Expect = 6.0e-69
Identity = 123/154 (79.87%), Postives = 144/154 (93.51%), Query Frame = 0


Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK DT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVE 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KK+AG++  S RPGH+  +TLS++H+YEIAKV+
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANNMGIKVVKELD 156
           Q+DP+CQYMPLESICKSIIGTAN+MGIK+V++L+
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]

BLAST of Carg07915 vs. TAIR 10
Match: AT1G32990.1 (plastid ribosomal protein l11 )

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-20
Identity = 58/140 (41.43%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+ ART   KA   + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVEQSDPYCQYM 130
            D +F F +K+P  +  L K+AG+E  S  P       +++  +  IA  +  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANNMGIKV 151
            +ES  + I GTA NMGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]

BLAST of Carg07915 vs. TAIR 10
Match: AT5G51610.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 24/79 (30.38%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 72  DNTFEFTVKSPSVTWYLKKSAGIESVSGRPGHVVASTLSLKHIYEIAKVEQSDPYCQYMP 131
           D +F F +K+P  ++ L K+AG++  S  P  +    +++  + +IA+V+  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANNMGIKV 151
           + S  ++I GTA NMGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

The following BLAST results are available for this feature:

BLAST of Carg07915 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026702.1	1.4e-80	100.00	mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022926601.1	2.1e-79	98.71	54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata]	[more]
KAG6594732.1	2.3e-78	98.06	hypothetical protein SDJN03_11285, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023518358.1	2.8e-76	95.48	54S ribosomal protein L19, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003939.1	2.8e-76	95.48	54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of Carg07915 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UTK2	6.4e-31	48.89	54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9VFJ2	2.8e-26	36.13	39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=m...	[more]
Q9Y3B7	8.0e-26	41.61	39S ribosomal protein L11, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL11 PE=1 ...	[more]
Q07KJ7	1.8e-25	42.14	50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=31605...	[more]
A7HWQ0	3.1e-25	42.25	50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130...	[more]

BLAST of Carg07915 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFD1	1.0e-79	98.71	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KUS1	1.4e-76	95.48	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1IPM9	2.3e-76	94.19	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1BU21	1.1e-75	93.55	54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1GG89	1.5e-75	92.90	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Carg07915 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35490.1	6.0e-69	79.87	mitochondrial ribosomal protein L11	[more]
AT1G32990.1	1.4e-20	41.43	plastid ribosomal protein l11	[more]
AT5G51610.1	1.2e-05	30.38	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 17..151 e-value: 1.5E-61 score: 220.4
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..154
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 13..152 score: 23.106983
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 17..150 e-value: 9.52187E-58 score: 174.561
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 13..75 e-value: 1.9E-22 score: 78.8
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 11..77 e-value: 1.5E-24 score: 87.5
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 13..80
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 78..151 e-value: 6.5E-26 score: 92.3
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..151
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAM	TIGR01632	TIGR01632	coord: 13..152 e-value: 7.4E-51 score: 169.8
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 80..150 e-value: 5.0E-25 score: 87.8
None	No IPR available	PANTHER	PTHR11661:SF22	SUBFAMILY NOT NAMED	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07915-RA	Carg07915-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome