Carg07806 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07806
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein
Location	Carg_Chr07: 1271048 .. 1272134 (+)
RNA-Seq Expression	Carg07806
Synteny	Carg07806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTAAAATCGAAAAGCGTCGTCTCTGCTGCCGATAATGGACTGGATTTCGGAATTGTGAGATATACGCGTGGTTTAGGAAGGAAGAGGATTGTTATTTCTTGCAATGAGGATGATTCGTCCATCTACTTGACGCCGAAGGCATCGTCGAAGAGGCCCTGCAGCGCCGTCAGGACGACGGTGGACACCGATAAGTCTCTGCTCGAGACCCTACCTCAGGAGATTCTGGTTAGTTCAAATTTCTTCGAAATGATCAAATCTTCACATTCGCAATTCGTCTTTCGACTTCTGTTTCTAAATTGATTTTCCCCCTTTGTTCTCTCCATCAGATTAGGATACTCTGCGGTGTAGACCATGATGATTTGAAACAGCTAATTCGCATTTCGAAAACAATTAGCGAAGCGGTAAATATCACTCGCATCATTATTCACTTAATTTGTTTCTGTTCATTTCTGATTCTCATCGATTTAGGGTTTCTATTTCATTTACAGACTTTGATTGCAAAAGAATGGCATTTCGCCTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCAGCGCCTTTGAGTTCGATAACTCCAGCGATCTTGACGAGATTGAAGCCCCAAATGCTCCAACCACTAAACGATTTAGGTCATTAAACAGGAAGAAGCTCGCGGACATTTCCGTGGCCTTATTCGCATAAGAAGAACAATGGCCAAAGAAAAAGTTGCCCATTGAGACAGATATGAATTAACCCAAAGGGCTCTGTAAATACATCTGTATATCTAATGCTGTTGTAGAAATTACGCGATGCTGGTAGGAAGAAACTGATCTGAAATCTCAGATCCTGCTTGTGAAGCTGTACATGTCAGGACCTTTTCACTGATCCATTCTTCAAATCTTTCATTGAAGATGAAGATGGTGGGCGGGTTAGAAAAAGAATGCATTTCATTTGTTTTTTTTCATACATGTATTACAGAGACAAAAACTGATGGTAGGTATAAGGTTCTAGGAAATTCATTTACAAGGGTAGGGTAGCACTTTGGTTTAGTCCCTTTTAAATTCTGATAGCTTTGATGAACA

mRNA sequence

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTAAAATCGAAAAGCGTCGTCTCTGCTGCCGATAATGGACTGGATTTCGGAATTGTGAGATATACGCGTGGTTTAGGAAGGAAGAGGATTGTTATTTCTTGCAATGAGGATGATTCGTCCATCTACTTGACGCCGAAGGCATCGTCGAAGAGGCCCTGCAGCGCCGTCAGGACGACGGTGGACACCGATAAGTCTCTGCTCGAGACCCTACCTCAGGAGATTCTGATTAGGATACTCTGCGGTGTAGACCATGATGATTTGAAACAGCTAATTCGCATTTCGAAAACAATTAGCGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCCTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCAGCGCCTTTGAGTTCGATAACTCCAGCGATCTTGACGAGATTGAAGCCCCAAATGCTCCAACCACTAAACGATTTAGGTCATTAAACAGGAAGAAGCTCGCGGACATTTCCGTGGCCTTATTCGCATAAGAAGAACAATGGCCAAAGAAAAAGTTGCCCATTGAGACAGATATGAATTAACCCAAAGGGCTCTGTAAATACATCTGTATATCTAATGCTGTTGTAGAAATTACGCGATGCTGGTAGGAAGAAACTGATCTGAAATCTCAGATCCTGCTTGTGAAGCTGTACATGTCAGGACCTTTTCACTGATCCATTCTTCAAATCTTTCATTGAAGATGAAGATGGTGGGCGGGTTAGAAAAAGAATGCATTTCATTTGTTTTTTTTCATACATGTATTACAGAGACAAAAACTGATGGTAGGTATAAGGTTCTAGGAAATTCATTTACAAGGGTAGGGTAGCACTTTGGTTTAGTCCCTTTTAAATTCTGATAGCTTTGATGAACA

Coding sequence (CDS)

ATGGCGTTGGGAAAGAAGAGCGGTTGTTTAAAATCGAAAAGCGTCGTCTCTGCTGCCGATAATGGACTGGATTTCGGAATTGTGAGATATACGCGTGGTTTAGGAAGGAAGAGGATTGTTATTTCTTGCAATGAGGATGATTCGTCCATCTACTTGACGCCGAAGGCATCGTCGAAGAGGCCCTGCAGCGCCGTCAGGACGACGGTGGACACCGATAAGTCTCTGCTCGAGACCCTACCTCAGGAGATTCTGATTAGGATACTCTGCGGTGTAGACCATGATGATTTGAAACAGCTAATTCGCATTTCGAAAACAATTAGCGAAGCGACTTTGATTGCAAAAGAATGGCATTTCGCCTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCAGCGCCTTTGAGTTCGATAACTCCAGCGATCTTGACGAGATTGAAGCCCCAAATGCTCCAACCACTAAACGATTTAGGTCATTAAACAGGAAGAAGCTCGCGGACATTTCCGTGGCCTTATTCGCATAA

Protein sequence

MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKRPCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAYSTPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA

Homology

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BLAST of Carg07806 vs. NCBI nr
Match: XP_022926383.1 (F-box protein SKIP27-like [Cucurbita moschata] >KAG7026596.1 F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR
Sbjct: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
           PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY
Sbjct: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 173
           STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA
Sbjct: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 172

[Close]

BLAST of Carg07806 vs. NCBI nr
Match: KAG6594628.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335.5 bits (859), Expect = 2.7e-88
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR
Sbjct: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
           PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAK+WHFAY
Sbjct: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKQWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 173
           STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA
Sbjct: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 172

[Close]

BLAST of Carg07806 vs. NCBI nr
Match: XP_023518385.1 (F-box protein SKIP27-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.3 bits (856), Expect = 6.0e-88
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR
Sbjct: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
           PCSAVRTTVD DKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY
Sbjct: 61  PCSAVRTTVDIDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 173
           STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA
Sbjct: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 172

[Close]

BLAST of Carg07806 vs. NCBI nr
Match: XP_023003981.1 (F-box protein At1g61340-like [Cucurbita maxima])

HSP 1 Score: 325.9 bits (834), Expect = 2.1e-85
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKKSGCLKSKSVVSAAD GLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR
Sbjct: 1   MALGKKSGCLKSKSVVSAADTGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
           PCSAVRTTV TDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTI EATLIAKEWHFAY
Sbjct: 61  PCSAVRTTVGTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTIREATLIAKEWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 173
           STPSKVRAFRSAF FDNSSDLDEIEAPNAPTT+RFRSLNRKKLADISVALFA
Sbjct: 121 STPSKVRAFRSAFVFDNSSDLDEIEAPNAPTTRRFRSLNRKKLADISVALFA 172

[Close]

BLAST of Carg07806 vs. NCBI nr
Match: TYK13104.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 142/173 (82.08%), Postives = 157/173 (90.75%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKK+GCLKSKSVVSAAD GLDFG+VRYTRGLGRKR+VISCNE+DSSI LTPKA SKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+ V T V+ D+SLLE LPQEILIR+LCGV+HDDLKQLIR+SKTISEATLIAK+ HFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRS-LNRKKLADISVALFA 173
           STPSKVRAFR+A E D+SSD DEIEAPNA  T+RFRS LNRKKLA+ISVALFA
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFA 173

[Close]

BLAST of Carg07806 vs. ExPASy Swiss-Prot
Match: O65416 (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 83/191 (43.46%), Postives = 119/191 (62.30%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGI--VRYTRGLGRKRIVI-SCNEDDSS-------- 60
           MAL K+   + S +     +  L+ G+  VR+TRGLGRKRI+I SC  +  S        
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  IYLTP--KASSKRPCSAVR--TTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKT 120
           +  +P  K+S KR  S +   ++  ++KS LE LPQ++LIR++CGVDH+DLK L  +SK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 ISEATLIAKEWHFAYSTPSKVRAFRSAFEFDNSSDL----DEIEAPNAPTTKRFRSLNRK 172
           I EA+L+AK  HFAY+TP K RAFR++ + +  SD     D+IE PNAP   R+    RK
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of Carg07806 vs. ExPASy Swiss-Prot
Match: Q8GX77 (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.9e-29
Identity = 86/186 (46.24%), Postives = 111/186 (59.68%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNED-DSSIYLTP 60
           MALGKK        L+ +  V     GL    V+Y RG GRKRI+IS  ++ + SI+ +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KASSKRPCSAVRTTVDTDKSL-LETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIA 120
               K+ C    T+V   +S  LE LP +IL+RI+CGV+H+DLKQL  +SKTI EAT+IA
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIA 120

Query: 121 KEWHFAYSTPSKVRAFRSA-----FEFDNSSDLDEIEAPNAPTTKRFR--SLNRKK-LAD 172
           K+ HFAYSTP K   F          FD   D +EIEAP AP  KR+R   +NR K  + 
Sbjct: 121 KQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSG 180

[Close]

BLAST of Carg07806 vs. ExPASy Swiss-Prot
Match: Q9S9T6 (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-25
Identity = 77/157 (49.04%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 23  LDFGIVRYTRGLGRKRIVIS--CNEDDSSIYLTPKASSKRPCSAVRTTVDTDKSLLETLP 82
           L  G VR+TRGLGRKRI+IS    E+DS          KRP      T ++ +SLLETL 
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDS-------PPVKRPS---HETTESCRSLLETLH 78

Query: 83  QEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAYSTPSKVRAFRSAF-----EF 142
           Q+ILIR+LC VDH+DL  L R+SKTI +A + AK+ HF YSTP K   FR A        
Sbjct: 79  QDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNS 138

Query: 143 DNSSDLDEIEAPNAPTTKRFRSLNRKK-LADISVALF 172
           ++SS  DE+E PNAP  +RF  +NR+  L+ IS+ LF
Sbjct: 139 NSSSQDDEMEPPNAPIRRRF--INRESDLSKISMVLF 163

[Close]

BLAST of Carg07806 vs. ExPASy Swiss-Prot
Match: Q5XF11 (F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-09
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 48  SSIYLTPKASSKRPCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTIS 107
           +++  TPK     PC          +S LE+LP ++L++I+C + HD LK +  +S+ I 
Sbjct: 142 NTLLRTPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIR 201

Query: 108 EATLIAKEWHFAYSTPSKVR 128
            AT++A+++HF Y+TP + R
Sbjct: 202 MATILARQYHFNYTTPDRSR 213

[Close]

BLAST of Carg07806 vs. ExPASy TrEMBL
Match: A0A6J1EHW4 (F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111433548 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 5.9e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR
Sbjct: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
           PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY
Sbjct: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 173
           STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA
Sbjct: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 172

[Close]

BLAST of Carg07806 vs. ExPASy TrEMBL
Match: A0A6J1KQU3 (F-box protein At1g61340-like OS=Cucurbita maxima OX=3661 GN=LOC111497432 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.0e-85
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKKSGCLKSKSVVSAAD GLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR
Sbjct: 1   MALGKKSGCLKSKSVVSAADTGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
           PCSAVRTTV TDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTI EATLIAKEWHFAY
Sbjct: 61  PCSAVRTTVGTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTIREATLIAKEWHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRSLNRKKLADISVALFA 173
           STPSKVRAFRSAF FDNSSDLDEIEAPNAPTT+RFRSLNRKKLADISVALFA
Sbjct: 121 STPSKVRAFRSAFVFDNSSDLDEIEAPNAPTTRRFRSLNRKKLADISVALFA 172

[Close]

BLAST of Carg07806 vs. ExPASy TrEMBL
Match: A0A5D3CPZ7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.5e-71
Identity = 142/173 (82.08%), Postives = 157/173 (90.75%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKK+GCLKSKSVVSAAD GLDFG+VRYTRGLGRKR+VISCNE+DSSI LTPKA SKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+ V T V+ D+SLLE LPQEILIR+LCGV+HDDLKQLIR+SKTISEATLIAK+ HFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRS-LNRKKLADISVALFA 173
           STPSKVRAFR+A E D+SSD DEIEAPNA  T+RFRS LNRKKLA+ISVALFA
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFA 173

[Close]

BLAST of Carg07806 vs. ExPASy TrEMBL
Match: A0A5A7UGT0 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.1e-70
Identity = 141/173 (81.50%), Postives = 157/173 (90.75%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKK+GCLKSKSVVSAAD GLDFG+VRYTRGLGRKR+VISCNE+DSSI LTPKA SKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+ V T V+ D+SLLE LPQEILIR+LCGV+HDDLKQLIR+SKTISEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRS-LNRKKLADISVALFA 173
           STPSKVRAFR+A E ++SSD DEIEAPNA  T+RFRS LNRKKLA+ISVALFA
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFA 173

[Close]

BLAST of Carg07806 vs. ExPASy TrEMBL
Match: A0A1S3B0I0 (F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.1e-70
Identity = 141/173 (81.50%), Postives = 157/173 (90.75%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNEDDSSIYLTPKASSKR 60
           MALGKK+GCLKSKSVVSAAD GLDFG+VRYTRGLGRKR+VISCNE+DSSI LTPKA SKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  PCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAY 120
            C+ V T V+ D+SLLE LPQEILIR+LCGV+HDDLKQLIR+SKTISEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRSAFEFDNSSDLDEIEAPNAPTTKRFRS-LNRKKLADISVALFA 173
           STPSKVRAFR+A E ++SSD DEIEAPNA  T+RFRS LNRKKLA+ISVALFA
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFA 173

[Close]

BLAST of Carg07806 vs. TAIR 10
Match: AT4G21510.1 (F-box family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 83/191 (43.46%), Postives = 119/191 (62.30%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADNGLDFGI--VRYTRGLGRKRIVI-SCNEDDSS-------- 60
           MAL K+   + S +     +  L+ G+  VR+TRGLGRKRI+I SC  +  S        
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  IYLTP--KASSKRPCSAVR--TTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKT 120
           +  +P  K+S KR  S +   ++  ++KS LE LPQ++LIR++CGVDH+DLK L  +SK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 ISEATLIAKEWHFAYSTPSKVRAFRSAFEFDNSSDL----DEIEAPNAPTTKRFRSLNRK 172
           I EA+L+AK  HFAY+TP K RAFR++ + +  SD     D+IE PNAP   R+    RK
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of Carg07806 vs. TAIR 10
Match: AT1G61340.1 (F-box family protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-30
Identity = 86/186 (46.24%), Postives = 111/186 (59.68%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNED-DSSIYLTP 60
           MALGKK        L+ +  V     GL    V+Y RG GRKRI+IS  ++ + SI+ +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KASSKRPCSAVRTTVDTDKSL-LETLPQEILIRILCGVDHDDLKQLIRISKTISEATLIA 120
               K+ C    T+V   +S  LE LP +IL+RI+CGV+H+DLKQL  +SKTI EAT+IA
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIA 120

Query: 121 KEWHFAYSTPSKVRAFRSA-----FEFDNSSDLDEIEAPNAPTTKRFR--SLNRKK-LAD 172
           K+ HFAYSTP K   F          FD   D +EIEAP AP  KR+R   +NR K  + 
Sbjct: 121 KQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSG 180

[Close]

BLAST of Carg07806 vs. TAIR 10
Match: AT4G05010.1 (F-box family protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-26
Identity = 77/157 (49.04%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 23  LDFGIVRYTRGLGRKRIVIS--CNEDDSSIYLTPKASSKRPCSAVRTTVDTDKSLLETLP 82
           L  G VR+TRGLGRKRI+IS    E+DS          KRP      T ++ +SLLETL 
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPENDS-------PPVKRPS---HETTESCRSLLETLH 78

Query: 83  QEILIRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAYSTPSKVRAFRSAF-----EF 142
           Q+ILIR+LC VDH+DL  L R+SKTI +A + AK+ HF YSTP K   FR A        
Sbjct: 79  QDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNS 138

Query: 143 DNSSDLDEIEAPNAPTTKRFRSLNRKK-LADISVALF 172
           ++SS  DE+E PNAP  +RF  +NR+  L+ IS+ LF
Sbjct: 139 NSSSQDDEMEPPNAPIRRRF--INRESDLSKISMVLF 163

[Close]

BLAST of Carg07806 vs. TAIR 10
Match: AT1G61340.2 (F-box family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 86/232 (37.07%), Postives = 111/232 (47.84%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADNGLDFGIVRYTRGLGRKRIVISCNED-DSSIYLTP 60
           MALGKK        L+ +  V     GL    V+Y RG GRKRI+IS  ++ + SI+ +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KASSKRPCSAVRTTVDTDKSL-LETLPQEIL----------------------------- 120
               K+ C    T+V   +S  LE LP +IL                             
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILLRVFVNSASVNQIELKVESFLFSEIQNRN 120

Query: 121 -----------------IRILCGVDHDDLKQLIRISKTISEATLIAKEWHFAYSTPSKVR 172
                            +RI+CGV+H+DLKQL  +SKTI EAT+IAK+ HFAYSTP K  
Sbjct: 121 GNEKMFNFFHIWKTFVIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTS 180

[Close]

BLAST of Carg07806 vs. TAIR 10
Match: AT4G35930.1 (F-box family protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 48  SSIYLTPKASSKRPCSAVRTTVDTDKSLLETLPQEILIRILCGVDHDDLKQLIRISKTIS 107
           +++  TPK     PC          +S LE+LP ++L++I+C + HD LK +  +S+ I 
Sbjct: 142 NTLLRTPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIR 201

Query: 108 EATLIAKEWHFAYSTPSKVR 128
            AT++A+++HF Y+TP + R
Sbjct: 202 MATILARQYHFNYTTPDRSR 213

The following BLAST results are available for this feature:

BLAST of Carg07806 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926383.1	1.2e-88	100.00	F-box protein SKIP27-like [Cucurbita moschata] >KAG7026596.1 F-box protein, part...	[more]
KAG6594628.1	2.7e-88	99.42	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023518385.1	6.0e-88	99.42	F-box protein SKIP27-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003981.1	2.1e-85	97.09	F-box protein At1g61340-like [Cucurbita maxima]	[more]
TYK13104.1	1.1e-70	82.08	F-box protein [Cucumis melo var. makuwa]	[more]

BLAST of Carg07806 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65416	1.7e-29	43.46	F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2	[more]
Q8GX77	3.9e-29	46.24	F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1	[more]
Q9S9T6	4.4e-25	49.04	F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1	[more]
Q5XF11	5.8e-09	35.00	F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1	[more]

BLAST of Carg07806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHW4	5.9e-89	100.00	F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111433548 PE=4 SV=...	[more]
A0A6J1KQU3	1.0e-85	97.09	F-box protein At1g61340-like OS=Cucurbita maxima OX=3661 GN=LOC111497432 PE=4 SV...	[more]
A0A5D3CPZ7	5.5e-71	82.08	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130...	[more]
A0A5A7UGT0	2.1e-70	81.50	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340...	[more]
A0A1S3B0I0	2.1e-70	81.50	F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1	[more]

BLAST of Carg07806 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21510.1	1.2e-30	43.46	F-box family protein	[more]
AT1G61340.1	2.7e-30	46.24	F-box family protein	[more]
AT4G05010.1	3.1e-26	49.04	F-box family protein	[more]
AT1G61340.2	1.1e-23	37.07	F-box family protein	[more]
AT4G35930.1	4.1e-10	35.00	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 4..172
None	No IPR available	PANTHER	PTHR34049	F-BOX PROTEIN SKIP27	coord: 4..172
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 73..123 score: 8.914593

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07806-RA	Carg07806-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding