Carg07774 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07774
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Squamosa promoter-binding-like protein
Location	Carg_Chr07: 1110638 .. 1111227 (-)
RNA-Seq Expression	Carg07774
Synteny	Carg07774

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACACTCAGGAGATCAAGGTTGGGGGGAACCAGTGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGACGACGAAATAGGGTTTGTAAAAGACGAGAGGAAGAAGAGAGCCGCGAGTGGTAGCCGAAGCGGCAGCGGAGGAGGAAGGACTTCGGTGCCGCGTTGTCAAGCCGACAGCTGCAATGTCGATCTGAACGGCGCCAGGGCGTACCACCGCCGCCACAAGGTGTGTGAGTTCCATTCCAAGGCAGCGGTGGTGATTTTGGCCGGACTCGAACAGCGCTTTTGCCAACAGTGTAGTAGGTAAAAAATAAAAAGAATACACATTAACCAATCACTATGCTTAGCGTAAATAAGTTATAAAAAAATAAATAAAAAGATTTAATATTTAACAGTTATGAATATAAAAAATATAAGGCATCACTAATTTGGGGTGTTTTCTTATGTTATTATTATTACAGGTTTCATTCGGTATCAGAGTTCGATGAGACAAAAAGAAGCTGCCGGAGACGTTTGGCCGGACACAATGAACGGCGGCGAAAAAACTTACCGGACTTCCAGGGACAATCCTCCACTTGA

mRNA sequence

ATGGAACACTCAGGAGATCAAGGTTGGGGGGAACCAGTGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGACGACGAAATAGGGTTTGTAAAAGACGAGAGGAAGAAGAGAGCCGCGAGTGGTAGCCGAAGCGGCAGCGGAGGAGGAAGGACTTCGGTGCCGCGTTGTCAAGCCGACAGCTGCAATGTCGATCTGAACGGCGCCAGGGCGTACCACCGCCGCCACAAGGTGTGTGAGTTCCATTCCAAGGCAGCGGTGGTGATTTTGGCCGGACTCGAACAGCGCTTTTGCCAACAGTGTAGTAGGTTTCATTCGGTATCAGAGTTCGATGAGACAAAAAGAAGCTGCCGGAGACGTTTGGCCGGACACAATGAACGGCGGCGAAAAAACTTACCGGACTTCCAGGGACAATCCTCCACTTGA

Coding sequence (CDS)

ATGGAACACTCAGGAGATCAAGGTTGGGGGGAACCAGTGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGACGACGAAATAGGGTTTGTAAAAGACGAGAGGAAGAAGAGAGCCGCGAGTGGTAGCCGAAGCGGCAGCGGAGGAGGAAGGACTTCGGTGCCGCGTTGTCAAGCCGACAGCTGCAATGTCGATCTGAACGGCGCCAGGGCGTACCACCGCCGCCACAAGGTGTGTGAGTTCCATTCCAAGGCAGCGGTGGTGATTTTGGCCGGACTCGAACAGCGCTTTTGCCAACAGTGTAGTAGGTTTCATTCGGTATCAGAGTTCGATGAGACAAAAAGAAGCTGCCGGAGACGTTTGGCCGGACACAATGAACGGCGGCGAAAAAACTTACCGGACTTCCAGGGACAATCCTCCACTTGA

Protein sequence

MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

Homology

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BLAST of Carg07774 vs. NCBI nr
Match: KAG7026565.1 (Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 2.5e-71
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60
           MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ
Sbjct: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60

Query: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120
           ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR
Sbjct: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120

Query: 121 RRLAGHNERRRKNLPDFQGQSST 144
           RRLAGHNERRRKNLPDFQGQSST
Sbjct: 121 RRLAGHNERRRKNLPDFQGQSST 143

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BLAST of Carg07774 vs. NCBI nr
Match: XP_022926740.1 (squamosa promoter-binding-like protein 3 [Cucurbita moschata] >XP_022926741.1 squamosa promoter-binding-like protein 3 [Cucurbita moschata])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60
           MEHSGDQGWGEPVEEEEEEEE++DDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ
Sbjct: 1   MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60

Query: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120
           ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR
Sbjct: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120

Query: 121 RRLAGHNERRRKNLPDFQGQSST 144
           RRLAGHNERRRKNLPDFQGQSST
Sbjct: 121 RRLAGHNERRRKNLPDFQGQSST 143

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BLAST of Carg07774 vs. NCBI nr
Match: KAG6594594.1 (Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MEHSGDQGWGEPV-EEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRC 60
           MEHSGDQGWGEPV EEEEEEEE+++DDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRC
Sbjct: 1   MEHSGDQGWGEPVEEEEEEEEEEEEDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRC 60

Query: 61  QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC 120
           QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC
Sbjct: 61  QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC 120

Query: 121 RRRLAGHNERRRKNLPDFQGQSST 144
           RRRLAGHNERRRKNLPDFQGQSST
Sbjct: 121 RRRLAGHNERRRKNLPDFQGQSST 144

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BLAST of Carg07774 vs. NCBI nr
Match: XP_023004048.1 (squamosa promoter-binding-like protein 3 [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64
Identity = 133/143 (93.01%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60
           ME+SGDQGWG+PVEEEEEEEE  +DDDDE+GFV+DERKKRA S SRSGSGGGRTSV RCQ
Sbjct: 1   MENSGDQGWGDPVEEEEEEEE--EDDDDEVGFVEDERKKRAVSSSRSGSGGGRTSVARCQ 60

Query: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120
           ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR
Sbjct: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120

Query: 121 RRLAGHNERRRKNLPDFQGQSST 144
           RRLAGHNERRRKNLPDFQGQSST
Sbjct: 121 RRLAGHNERRRKNLPDFQGQSST 141

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BLAST of Carg07774 vs. NCBI nr
Match: XP_023518277.1 (squamosa promoter-binding-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.0 bits (650), Expect = 3.9e-64
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60
           MEHSGDQGWG+PVEEEEEE   D+DDDDEIGFVKDERKKRA SGSRSG GGGRTSV RCQ
Sbjct: 1   MEHSGDQGWGDPVEEEEEE---DEDDDDEIGFVKDERKKRAVSGSRSGGGGGRTSVARCQ 60

Query: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120
           ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQ  RFHSVSEFDETKRSCR
Sbjct: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQXIRFHSVSEFDETKRSCR 120

Query: 121 RRLAGHNERRRKNLPDFQGQSST 144
           RRLAGHNERRRKNLPDFQGQSST
Sbjct: 121 RRLAGHNERRRKNLPDFQGQSST 140

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BLAST of Carg07774 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.5e-30
Identity = 64/97 (65.98%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 40  RAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF 99
           RA  G+ SG GGG    PRCQ + C VDL+ A  Y+RRHKVC+ HSK  VV++AGL QRF
Sbjct: 95  RAGGGAPSGGGGG----PRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRF 154

Query: 100 CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD 137
           CQQCSRFH ++EFD+ KRSCRRRLAGHNERRRK+  D
Sbjct: 155 CQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAAD 187

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BLAST of Carg07774 vs. ExPASy Swiss-Prot
Match: Q700C2 (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana OX=3702 GN=SPL16 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-28
Identity = 61/98 (62.24%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 39  KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQR 98
           K+  SGS    GGG  + P+CQ D+C  DL+ A+ YHRRHKVCE HSKA   ++    QR
Sbjct: 62  KKVRSGSPGSGGGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQR 121

Query: 99  FCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD 137
           FCQQCSRFH +SEFDE KRSCRRRL GHN RRRK  PD
Sbjct: 122 FCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPD 159

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BLAST of Carg07774 vs. ExPASy Swiss-Prot
Match: A2YFT9 (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica OX=39946 GN=SPL10 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-28
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 48  GSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFH 107
           G GG     PRCQA+ C  DL+GA+ YHRRHKVCE+H+KA+VV  +G +QRFCQQCSRFH
Sbjct: 170 GFGGAHHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFH 229

Query: 108 SVSEFDETKRSCRRRLAGHNERRRK 133
            ++EFDE KRSCR+RLA HN RRRK
Sbjct: 230 VLTEFDEAKRSCRKRLAEHNRRRRK 254

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BLAST of Carg07774 vs. ExPASy Swiss-Prot
Match: Q0DAE8 (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL10 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-28
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 48  GSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFH 107
           G GG     PRCQA+ C  DL+GA+ YHRRHKVCE+H+KA+VV  +G +QRFCQQCSRFH
Sbjct: 170 GFGGAHHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFH 229

Query: 108 SVSEFDETKRSCRRRLAGHNERRRK 133
            ++EFDE KRSCR+RLA HN RRRK
Sbjct: 230 VLTEFDEAKRSCRKRLAEHNRRRRK 254

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BLAST of Carg07774 vs. ExPASy Swiss-Prot
Match: Q8GXL3 (Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SPL8 PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-28
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 35  DERKKRAASGSRSGSGG--GRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVIL 94
           D+   R    SR G  G     S PRCQA+ CN DL+ A+ YHRRHKVCEFHSKA+ V+ 
Sbjct: 162 DDFVSRLYRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVA 221

Query: 95  AGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK 133
           AGL QRFCQQCSRFH +SEFD  KRSCR+RLA HN RRRK
Sbjct: 222 AGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK 261

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BLAST of Carg07774 vs. ExPASy TrEMBL
Match: A0A6J1EFR3 (Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433770 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60
           MEHSGDQGWGEPVEEEEEEEE++DDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ
Sbjct: 1   MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60

Query: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120
           ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR
Sbjct: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120

Query: 121 RRLAGHNERRRKNLPDFQGQSST 144
           RRLAGHNERRRKNLPDFQGQSST
Sbjct: 121 RRLAGHNERRRKNLPDFQGQSST 143

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BLAST of Carg07774 vs. ExPASy TrEMBL
Match: A0A6J1KYC6 (Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC111497471 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.9e-65
Identity = 133/143 (93.01%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQ 60
           ME+SGDQGWG+PVEEEEEEEE  +DDDDE+GFV+DERKKRA S SRSGSGGGRTSV RCQ
Sbjct: 1   MENSGDQGWGDPVEEEEEEEE--EDDDDEVGFVEDERKKRAVSSSRSGSGGGRTSVARCQ 60

Query: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120
           ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR
Sbjct: 61  ADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCR 120

Query: 121 RRLAGHNERRRKNLPDFQGQSST 144
           RRLAGHNERRRKNLPDFQGQSST
Sbjct: 121 RRLAGHNERRRKNLPDFQGQSST 141

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BLAST of Carg07774 vs. ExPASy TrEMBL
Match: A0A0A0KK74 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517960 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.3e-45
Identity = 100/144 (69.44%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAA-SGSRSGSGGGRTSVPRC 60
           M +S DQGW    E+   +++DDD+D++EIGFV +ER++R+  + +R G GGGR++V RC
Sbjct: 1   MANSEDQGW----EDMIVDDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARC 60

Query: 61  QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC 120
           QAD CN DL GA+ YHRRHKVCEFHS+AAVVILAGLEQRFCQQCSRFH++SEFD+TKRSC
Sbjct: 61  QADGCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSC 120

Query: 121 RRRLAGHNERRRKNLPDFQGQSST 144
           R RLAGHNERRRK LPDF GQSST
Sbjct: 121 RMRLAGHNERRRKILPDFHGQSST 140

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BLAST of Carg07774 vs. ExPASy TrEMBL
Match: A0A1S3AZN8 (squamosa promoter-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103484510 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.7e-45
Identity = 98/144 (68.06%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAA-SGSRSGSGGGRTSVPRC 60
           M +S D  W + +    ++++DDD+D +E+GFV +ER++R+  +  R G GGGR++V RC
Sbjct: 1   MANSNDHSWEDMI---LDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARC 60

Query: 61  QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC 120
           QAD CN DL GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH+VSEFD+TKRSC
Sbjct: 61  QADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSC 120

Query: 121 RRRLAGHNERRRKNLPDFQGQSST 144
           R RLAGHNERRRK LPDF GQSST
Sbjct: 121 RSRLAGHNERRRKILPDFHGQSST 141

[Close]

BLAST of Carg07774 vs. ExPASy TrEMBL
Match: A0A6J1CK81 (squamosa promoter-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC111012368 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.6e-42
Identity = 101/138 (73.19%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 9   WGEPVEEEEEEEEDDDDDDDEIGFVKDERK-KRAASGSRSGSGGGRTSVPRCQADSCNVD 68
           WG   EE+EEEEE+D     E+GF ++ERK +RA SG R G G GR++V RCQAD CN D
Sbjct: 4   WGGTPEEDEEEEEEDGGGGGEVGFGEEERKIRRALSGGRCG-GAGRSTVARCQADGCNAD 63

Query: 69  LNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHN 128
           L+GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH+VSEFDETKRSCRRRLAGHN
Sbjct: 64  LSGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDETKRSCRRRLAGHN 123

Query: 129 ERRRKNLPD--FQGQSST 144
           ERRRK+L      GQSST
Sbjct: 124 ERRRKSLSSEFHGGQSST 140

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BLAST of Carg07774 vs. TAIR 10
Match: AT1G76580.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-29
Identity = 61/98 (62.24%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 39  KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQR 98
           K+  SGS    GGG  + P+CQ D+C  DL+ A+ YHRRHKVCE HSKA   ++    QR
Sbjct: 62  KKVRSGSPGSGGGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQR 121

Query: 99  FCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD 137
           FCQQCSRFH +SEFDE KRSCRRRL GHN RRRK  PD
Sbjct: 122 FCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPD 159

[Close]

BLAST of Carg07774 vs. TAIR 10
Match: AT1G02065.1 (squamosa promoter binding protein-like 8 )

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-29
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 35  DERKKRAASGSRSGSGG--GRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVIL 94
           D+   R    SR G  G     S PRCQA+ CN DL+ A+ YHRRHKVCEFHSKA+ V+ 
Sbjct: 162 DDFVSRLYRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVA 221

Query: 95  AGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK 133
           AGL QRFCQQCSRFH +SEFD  KRSCR+RLA HN RRRK
Sbjct: 222 AGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK 261

[Close]

BLAST of Carg07774 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 124.4 bits (311), Expect = 7.4e-29
Identity = 71/132 (53.79%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 5   GDQGWGEPVEEEEEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSC 64
           G +   E  EEEEEEEE +D+D     F ++E  ++   G  + S G       CQ +SC
Sbjct: 10  GKRSLRELSEEEEEEEETEDEDT----FEEEEALEKKQKGKATSSSG------VCQVESC 69

Query: 65  NVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLA 124
             D++ A+ YH+RHKVC+FH+KA  V ++GL QRFCQQCSRFH++SEFDE KRSCRRRLA
Sbjct: 70  TADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRLA 129

Query: 125 GHNERRRKNLPD 137
           GHNERRRK+  D
Sbjct: 130 GHNERRRKSTTD 131

[Close]

BLAST of Carg07774 vs. TAIR 10
Match: AT1G69170.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-27
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 22  DDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVC 81
           +DDDD    GF    +K RA++             P CQ   C+ DL+ ++ YH+RH+VC
Sbjct: 95  NDDDDTSSRGFALPSKKSRASNLCSQN--------PLCQVYGCSKDLSSSKDYHKRHRVC 154

Query: 82  EFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK 133
           E HSK +VVI+ GLEQRFCQQCSRFH +SEFD+ KRSCRRRLAGHNERRRK
Sbjct: 155 EAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

[Close]

BLAST of Carg07774 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26
Identity = 71/136 (52.21%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 1   MEHSGDQGWGEPVEEE---EEEEEDDDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVP 60
           ME    QG G   ++    EE+ E D D+++E+G      + R + GS +  G    S+ 
Sbjct: 1   MEGKRSQGQGYMKKKSYLVEEDMETDTDEEEEVG----RDRVRGSRGSINRGG----SLR 60

Query: 61  RCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKR 120
            CQ D C  D+  A+ YHRRHKVCE H+KA+ V L+GL QRFCQQCSRFH + EFDE KR
Sbjct: 61  LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 120

Query: 121 SCRRRLAGHNERRRKN 134
           SCRRRLAGHNERRRK+
Sbjct: 121 SCRRRLAGHNERRRKS 128

The following BLAST results are available for this feature:

BLAST of Carg07774 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026565.1	2.5e-71	100.00	Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022926740.1	2.1e-70	98.60	squamosa promoter-binding-like protein 3 [Cucurbita moschata] >XP_022926741.1 sq...	[more]
KAG6594594.1	1.5e-68	97.22	Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023004048.1	1.0e-64	93.01	squamosa promoter-binding-like protein 3 [Cucurbita maxima]	[more]
XP_023518277.1	3.9e-64	93.01	squamosa promoter-binding-like protein 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg07774 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Z461	8.5e-30	65.98	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q700C2	2.7e-28	62.24	Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana OX=3702 GN=SPL...	[more]
A2YFT9	3.6e-28	67.06	Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica OX=39946...	[more]
Q0DAE8	3.6e-28	67.06	Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8GXL3	3.6e-28	64.00	Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SPL8...	[more]

BLAST of Carg07774 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFR3	1.0e-70	98.60	Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1KYC6	4.9e-65	93.01	Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114974...	[more]
A0A0A0KK74	4.3e-45	69.44	SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517960 PE...	[more]
A0A1S3AZN8	9.7e-45	68.06	squamosa promoter-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103484510 PE=4...	[more]
A0A6J1CK81	2.6e-42	73.19	squamosa promoter-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC1110123...	[more]

BLAST of Carg07774 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76580.1	1.9e-29	62.24	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT1G02065.1	2.5e-29	64.00	squamosa promoter binding protein-like 8	[more]
AT2G33810.1	7.4e-29	53.79	squamosa promoter binding protein-like 3	[more]
AT1G69170.1	2.4e-27	56.76	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT1G53160.2	1.5e-26	52.21	squamosa promoter binding protein-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 49..120 e-value: 3.3E-33 score: 115.6
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 57..137
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 59..132 e-value: 6.5E-32 score: 109.7
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 56..133 score: 32.026005
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..30
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 22..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07774-RA	Carg07774-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046872	metal ion binding