Carg07616 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07616
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein TAPETUM DETERMINANT 1-like
LocationCarg_Chr13: 8145649 .. 8147993 (+)
RNA-Seq ExpressionCarg07616
SyntenyCarg07616
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACGAAACGAAGCGATGATGTACACTTTTCTGAGGATGGTGGTGTTTTGTTATTTGCAGGTATTCACGATTTCCCTCTGCCATTTTTGTCTCTGCCGAGCTGATCTTTCTGCTCCATTTTCTTCCTCTCTCTTACTTTTCAGCCTCTCTCTCTCTCTCTCTGTCTCGCATGCATTTGAATCAATCCGTATTCTTCCTTTTTCTGTCTTTCGTTCTCGTCCTTCTTCTTCCTCCGCCATAACTGCTACTTCTCTTGCACCGCAGCACGTTTCGTTTTCCTTCTACTGTCTTCGCTTTTTCCTGGTTTTTCATTTTCCTTGAGAATTGTACCGGCGGTTCCTCTTTTTCTCCTACGCCTTCTGAATTTCACCTCCTGCTTGTCGCATCATTAAAATCGCCTACGCCTATACCTGTGAGGTAACTGCTAACGACAGTCTCAGACTCTGACCACCGTTCAGCCTGTATGACTCTTTAACGCCATGGTTCTTTCTTAAAGTCAATCAAGTTCTACCGATAGCTTGCTTTCGACGGCTCTTCTTTCTTTTGACTGATTGTATTTTAAATGCAATTTTCTCTGATGATGTGATGTTTTCATTCTTTTTCCAACGCAGGTTTTTTAATTTCTTCTCATCGTATCAATCTTCCGACTCCGACTCGTTCCATCCCTCAGATTTCTTTCCAGGTCTATAGAATTCCTGTTATAAATGATGAAAGATTTGTCTACTACCAGGCGAGTATCGGTGATTTTCGCTTCGGTTTTCTTCATCTTCTTTTTGGTATCTGCCATTCTTACAGGTCTGTATCATCGCTGGCACTTAATTCTTACTGCGTTTTGTTTTGATATACTTATACGTCGTCTTCTTCTATCTGGATATTTTATTTGTCCTTGTATAACTTTTCTCCTTTATCGTTTTGTGCTGCATATAGGAACAAAGATATTATTCTTGTTCTACTACTTTTTTACATCGTCCCCTTCCTTACATGATTGCAGATCTGGATATTTTTCATTCCTTTATGGACTCGAGTCCACCTAGTTTTCTTCGGCTGGGTTTGAACAGCACAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACTAGTAAGTTTATGAATTCTGATTTGTCTTGTTTCGTAAATGCCAATACAAAATCGTTAAGAGGAAGGTTCGTTTCTGAGTTTGTTGTGGAAATTTATATTTTAATAACCGTTTGATTCTTGTTCTGTATTGGAATTATGATCTCGGGGATGGTGGAAGGGAGAGATTGGTTACTCAATTGCATAAATGGTTGATTTGGTGTCAGAAATGCACGCACGTCCATTCTTAGTAATGAAGCTAAGACACACCTTTTGCTGGATAGCTTTCCAGCTTCGGCTCTTTAACCTATATGGCCTTTCTGTAGCTTTTTTGGAGATGTCTTCTTAAATAGATCCCAAATACCCACTAGTCTTTGTTCCTCTTCTGTCGACGATTCATTGATTACATAAAAGCAACCTTTGGCCCGAAAGCGCGGAGCATTATAATGCCTTTCTGAGTTTTAGCTTTGTAGATTCTAATTGATTCATTGCTTTGACGAGAAAGCTCTACAGTTGATGCGTGGACTCTCTTTAGTGGGATGGTTTTGGGTATAGTTTTATTAGTTCTAGAATTTTTCATATGGGCGTAGTATTAAATTTTATGATTTGTTGGGTCAAACAAATGAACAGAAATTTGAAAAATGTTCCCGTGGATTCGTCTTTTTCAGACTCTCACTCATTACCTCTCATCTATTGCCTTTGAATTTGCTTTATCTTATATAATTGATTGTTTATGCTTTCTCTACACATCTTTATGACTTCCCGAAAGTGTGTTTTGTGTGCCCAAAGACTTTTTCCCATTGGGAGGTCGATATTTATTTATAAGAGTAATGTTTGCACGTGGGTGGTGCGTCGAACATTGATCAATATACAATGACAACAGATGACATGGACATGTTTCTTTATTTGAATATGCTTTAGGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCACACCTCATCAATCCCAGAGTCTTCAAGCGCCTTCATTACGATGACTGCCTCGTGAATGATGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTTCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGA

mRNA sequence

ATACGAAACGAAGCGATGATGTACACTTTTCTGAGGATGGTGGTGTTTTGTTATTTGCAGAATTGTACCGGCGGTTCCTCTTTTTCTCCTACGCCTTCTGAATTTCACCTCCTGCTTGTCGCATCATTAAAATCGCCTACGCCTATACCTGTGAGGCGAGTATCGGTGATTTTCGCTTCGGTTTTCTTCATCTTCTTTTTGGTATCTGCCATTCTTACAGATCTGGATATTTTTCATTCCTTTATGGACTCGAGTCCACCTAGTTTTCTTCGGCTGGGTTTGAACAGCACAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACTAGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCACACCTCATCAATCCCAGAGTCTTCAAGCGCCTTCATTACGATGACTGCCTCGTGAATGATGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTTCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGA

Coding sequence (CDS)

ATGATGTACACTTTTCTGAGGATGGTGGTGTTTTGTTATTTGCAGAATTGTACCGGCGGTTCCTCTTTTTCTCCTACGCCTTCTGAATTTCACCTCCTGCTTGTCGCATCATTAAAATCGCCTACGCCTATACCTGTGAGGCGAGTATCGGTGATTTTCGCTTCGGTTTTCTTCATCTTCTTTTTGGTATCTGCCATTCTTACAGATCTGGATATTTTTCATTCCTTTATGGACTCGAGTCCACCTAGTTTTCTTCGGCTGGGTTTGAACAGCACAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACTAGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCACACCTCATCAATCCCAGAGTCTTCAAGCGCCTTCATTACGATGACTGCCTCGTGAATGATGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTTCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGA

Protein sequence

MMYTFLRMVVFCYLQNCTGGSSFSPTPSEFHLLLVASLKSPTPIPVRRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK
Homology
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BLAST of Carg07616 vs. NCBI nr
Match: KAG7019756.1 (Protein TAPETUM DETERMINANT 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454.1 bits (1167), Expect = 6.7e-124
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 

Query: 1   MMYTFLRMVVFCYLQNCTGGSSFSPTPSEFHLLLVASLKSPTPIPVRRVSVIFASVFFIF 60
           MMYTFLRMVVFCYLQNCTGGSSFSPTPSEFHLLLVASLKSPTPIPVRRVSVIFASVFFIF
Sbjct: 1   MMYTFLRMVVFCYLQNCTGGSSFSPTPSEFHLLLVASLKSPTPIPVRRVSVIFASVFFIF 60

Query: 61  FLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCT 120
           FLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCT
Sbjct: 61  FLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCT 120

Query: 121 KSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLH 180
           KSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLH
Sbjct: 121 KSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLH 180

Query: 181 YDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 221
           YDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK
Sbjct: 181 YDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 220

[Close]
BLAST of Carg07616 vs. NCBI nr
Match: XP_022923940.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923942.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923943.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >KAG6584166.1 Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 361.7 bits (927), Expect = 4.5e-96
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 47  RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA 106
           RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA
Sbjct: 9   RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA 68

Query: 107 TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 166
           TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS
Sbjct: 69  TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 128

Query: 167 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 221
           SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK
Sbjct: 129 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 182

[Close]
BLAST of Carg07616 vs. NCBI nr
Match: XP_023000941.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita maxima] >XP_023000942.1 protein TAPETUM DETERMINANT 1-like [Cucurbita maxima] >XP_023000943.1 protein TAPETUM DETERMINANT 1-like [Cucurbita maxima] >XP_023000944.1 protein TAPETUM DETERMINANT 1-like [Cucurbita maxima] >XP_023000945.1 protein TAPETUM DETERMINANT 1-like [Cucurbita maxima])

HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91
Identity = 166/174 (95.40%), Postives = 168/174 (96.55%), Query Frame = 0 

Query: 47  RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA 106
           RRVSVIF SVFFIFFLVSAILTDLDI HSFM+ SPPSFLR+ L S IGAPHRKLLLTREA
Sbjct: 9   RRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSAIGAPHRKLLLTREA 68

Query: 107 TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 166
           TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS
Sbjct: 69  TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 128

Query: 167 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 221
           SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK
Sbjct: 129 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 182

[Close]
BLAST of Carg07616 vs. NCBI nr
Match: XP_023520053.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita pepo subsp. pepo] >XP_023520054.1 protein TAPETUM DETERMINANT 1-like [Cucurbita pepo subsp. pepo] >XP_023520055.1 protein TAPETUM DETERMINANT 1-like [Cucurbita pepo subsp. pepo] >XP_023520056.1 protein TAPETUM DETERMINANT 1-like [Cucurbita pepo subsp. pepo] >XP_023520057.1 protein TAPETUM DETERMINANT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.4 bits (882), Expect = 7.5e-91
Identity = 165/174 (94.83%), Postives = 169/174 (97.13%), Query Frame = 0 

Query: 47  RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA 106
           +RVSVIFASVFFIFFLVSAILTDLDI HSFM+ SPPSFLR+ L S IGAP+RKLLLTREA
Sbjct: 10  QRVSVIFASVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSAIGAPYRKLLLTREA 69

Query: 107 TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 166
           TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS
Sbjct: 70  TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 129

Query: 167 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 221
           SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK
Sbjct: 130 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 183

[Close]
BLAST of Carg07616 vs. NCBI nr
Match: XP_022137731.1 (protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137732.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137733.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137734.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137735.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 330.9 bits (847), Expect = 8.5e-87
Identity = 160/178 (89.89%), Postives = 167/178 (93.82%), Query Frame = 0 

Query: 40  SPTPIPVRRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRK 99
           S T    RRVSVIFASVFFIFF +SA+LTDLDI  SFM+SSPPS+L LGLN+TI APHRK
Sbjct: 7   STTTTATRRVSVIFASVFFIFFSLSALLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRK 66

Query: 100 LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 159
           LLLT+EATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH
Sbjct: 67  LLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 126

Query: 160 FKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 218
           FKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQYANT+PYPLSVSSVVC
Sbjct: 127 FKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 184

[Close]
BLAST of Carg07616 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.8e-40
Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 0 

Query: 97  HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 156
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 157 GCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 216
           GC I  IH  CGWFSSA LINPRVFKR+HYDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 217 VSSVVC 218
           V+ V C
Sbjct: 171 VAFVTC 175

[Close]
BLAST of Carg07616 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.8e-37
Identity = 84/179 (46.93%), Postives = 115/179 (64.25%), Query Frame = 0 

Query: 48  RVSVIFASVFFIFFLVSAILTDLDI---FHSFMDSSPPSFLRL------GLNSTIGAPHR 107
           R+  I+    ++FF+   +L  L +    + F  S+    + L       +N    A  R
Sbjct: 2   RMEHIYKFQHWLFFIGLGVLLSLSLSVKANDFEGSNDRRSIALKARSFVSINENRTALSR 61

Query: 108 KLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGI 167
           KLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+CV+ C+I  I
Sbjct: 62  KLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEI 121

Query: 168 HFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 218
           H  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN++ YPLSV+SV C
Sbjct: 122 HVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

[Close]
BLAST of Carg07616 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.8e-29
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 123 DIVINQGPTAPLPTGIPTYTVEVVNACVTG------CDIYGIHFKCGWFSSAHLINPRVF 182
           DI I QG   PLP+G+P YTV+V+N C  G      C I GIH +CGWFSS  L++PRVF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 183 KRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 218
           +RL +DDCL+NDG+PL+ G T+SF+Y N++PY LSVS   C
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

[Close]
BLAST of Carg07616 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.3e-23
Identity = 45/106 (42.45%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 113 RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLIN 172
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 173 PRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCK 219
           P  F+R+ ++DCLV  G  L     +SFQY+N++ YPL+V++V C+
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVACE 169

[Close]
BLAST of Carg07616 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.5e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 141 YTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYD--DCLVNDGKPLVYGGTL 200
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 201 SFQYANTYPYPL 211
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]
BLAST of Carg07616 vs. ExPASy TrEMBL
Match: A0A6J1EDD3 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431507 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.2e-96
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 47  RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA 106
           RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA
Sbjct: 9   RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA 68

Query: 107 TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 166
           TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS
Sbjct: 69  TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 128

Query: 167 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 221
           SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK
Sbjct: 129 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 182

[Close]
BLAST of Carg07616 vs. ExPASy TrEMBL
Match: A0A6J1KH78 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495228 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.3e-92
Identity = 166/174 (95.40%), Postives = 168/174 (96.55%), Query Frame = 0 

Query: 47  RRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREA 106
           RRVSVIF SVFFIFFLVSAILTDLDI HSFM+ SPPSFLR+ L S IGAPHRKLLLTREA
Sbjct: 9   RRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSAIGAPHRKLLLTREA 68

Query: 107 TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 166
           TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS
Sbjct: 69  TIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFS 128

Query: 167 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 221
           SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK
Sbjct: 129 SAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK 182

[Close]
BLAST of Carg07616 vs. ExPASy TrEMBL
Match: A0A6J1C840 (protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009090 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.1e-87
Identity = 160/178 (89.89%), Postives = 167/178 (93.82%), Query Frame = 0 

Query: 40  SPTPIPVRRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRK 99
           S T    RRVSVIFASVFFIFF +SA+LTDLDI  SFM+SSPPS+L LGLN+TI APHRK
Sbjct: 7   STTTTATRRVSVIFASVFFIFFSLSALLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRK 66

Query: 100 LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 159
           LLLT+EATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH
Sbjct: 67  LLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 126

Query: 160 FKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 218
           FKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQYANT+PYPLSVSSVVC
Sbjct: 127 FKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 184

[Close]
BLAST of Carg07616 vs. ExPASy TrEMBL
Match: A0A6J1C7I8 (protein TAPETUM DETERMINANT 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009090 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.1e-85
Identity = 159/178 (89.33%), Postives = 166/178 (93.26%), Query Frame = 0 

Query: 40  SPTPIPVRRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRK 99
           S T    RRVSVIFASVFFIFF +SA+LTDLDI  SFM+SSPPS+L LGLN+TI APHRK
Sbjct: 7   STTTTATRRVSVIFASVFFIFFSLSALLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRK 66

Query: 100 LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 159
           LLLT+ ATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH
Sbjct: 67  LLLTK-ATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 126

Query: 160 FKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 218
           FKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQYANT+PYPLSVSSVVC
Sbjct: 127 FKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 183

[Close]
BLAST of Carg07616 vs. ExPASy TrEMBL
Match: A0A1S3B0P8 (protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.0e-81
Identity = 152/176 (86.36%), Postives = 159/176 (90.34%), Query Frame = 0 

Query: 42  TPIPVRRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLL 101
           T    RRVSVIFA V F+FF +SA+LTD +I    MDSSPPSFL L LN+T  APHRKLL
Sbjct: 10  TTTTTRRVSVIFALVIFVFFFLSAVLTDSNI----MDSSPPSFLPLNLNTTTVAPHRKLL 69

Query: 102 LTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFK 161
           LTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFK
Sbjct: 70  LTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFK 129

Query: 162 CGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 218
           CGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSV+C
Sbjct: 130 CGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]
BLAST of Carg07616 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-41
Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 0 

Query: 97  HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 156
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 157 GCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 216
           GC I  IH  CGWFSSA LINPRVFKR+HYDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 217 VSSVVC 218
           V+ V C
Sbjct: 171 VAFVTC 175

[Close]
BLAST of Carg07616 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-38
Identity = 84/179 (46.93%), Postives = 115/179 (64.25%), Query Frame = 0 

Query: 48  RVSVIFASVFFIFFLVSAILTDLDI---FHSFMDSSPPSFLRL------GLNSTIGAPHR 107
           R+  I+    ++FF+   +L  L +    + F  S+    + L       +N    A  R
Sbjct: 2   RMEHIYKFQHWLFFIGLGVLLSLSLSVKANDFEGSNDRRSIALKARSFVSINENRTALSR 61

Query: 108 KLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGI 167
           KLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+CV+ C+I  I
Sbjct: 62  KLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEI 121

Query: 168 HFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 218
           H  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN++ YPLSV+SV C
Sbjct: 122 HVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

[Close]
BLAST of Carg07616 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-06
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 141 YTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYD--DCLVNDGKPLVYGGTL 200
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 201 SFQYANTYPYPL 211
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

The following BLAST results are available for this feature:
BLAST of Carg07616 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019756.16.7e-124100.00Protein TAPETUM DETERMINANT 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022923940.14.5e-96100.00protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein ... [more]
XP_023000941.11.5e-9195.40protein TAPETUM DETERMINANT 1-like [Cucurbita maxima] >XP_023000942.1 protein TA... [more]
XP_023520053.17.5e-9194.83protein TAPETUM DETERMINANT 1-like [Cucurbita pepo subsp. pepo] >XP_023520054.1 ... [more]
XP_022137731.18.5e-8789.89protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_02213773... [more]
BLAST of Carg07616 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6TLJ22.8e-4062.70Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1[more]
Q1G3T13.8e-3746.93TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1[more]
Q2QR543.8e-2956.44TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S... [more]
Q8S6P95.3e-2342.45TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S... [more]
A8MS786.5e-0538.89Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P... [more]
BLAST of Carg07616 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EDD32.2e-96100.00protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431507... [more]
A0A6J1KH787.3e-9295.40protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495228 P... [more]
A0A6J1C8404.1e-8789.89protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1C7I85.1e-8589.33protein TAPETUM DETERMINANT 1-like isoform X2 OS=Momordica charantia OX=3673 GN=... [more]
A0A1S3B0P82.0e-8186.36protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1[more]
BLAST of Carg07616 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24972.12.0e-4162.70tapetum determinant 1 [more]
AT1G32583.12.7e-3846.93FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G05835.14.6e-0638.89PHD finger protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040361Tapetum determinant 1PANTHERPTHR33184PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATEDcoord: 47..217
NoneNo IPR availablePANTHERPTHR33184:SF67PROTEIN TAPETUM DETERMINANT 1coord: 47..217

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07616-RACarg07616-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001709 cell fate determination
cellular_component GO:0016021 integral component of membrane