Carg07605 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07605
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 8093190 .. 8094318 (+)
RNA-Seq ExpressionCarg07605
SyntenyCarg07605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCCAAGCAGCTGTTCCATCTCTTTTCCCGTAGCTGTCAAGAAAGGTTCACAGGGACTGATTACATGTATGTTTCTCTGTACCTTCATCTCAGAACAAAAGTGAGCTCATTATTGGATCAAAATGCTTTTGTCAGGGCAGAATCTGGTAGAATTTTTCTCATTTCTAATCCTGAAAATCCAGAGTTTCCCTTTAGAGGAAATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTATATCATGTACAACTACATCAGTGGTATTCCCTTCTCTTGCTATGATAGCAGCACTGTAAATTGTTGCCATTCTTCCTGGTGCCAGAGGACTATCTCCTCTCGGTCCGTCCACGACTACCACATCCCATTTTACTTCATAAACTTCTCTTGGAAGATCTGTCAACGCAAGTTGGCATCTGGATGAATTCCTGAGGCCCGAGTTTGGTGCACATGATTTGTTTCCTCTGGCATGTTTTAACAACTTGTAAGCTTTTTCTGCATGAAGCTTGTAATCAACTTTGTACATCCGGGTGTGATTTGAATTGACTTTGAATATGCTCAGTTTGTAGGGATCGTCCTCCAGAAAAACATTCTTTCCACCAGGATTGACTGCTGAGAGGTTAAGGTACTGTGATTCTATCCCAAAGAAAAGGAGATTGCAGGGTACTTTTTTGGCAATCAGATTTGAAAGAAGCTTGAATTCTTTCTCTGAAATGGTAGCTTCATTTGCAGAGGTTCTACTGTGATTTCTTGAGAACCCTGATATTGGGCGTTGAAGCTTTGGAGGCAATGCAATTGCTAGAATTGGAGAAGTATAAGATGTGGTAAGTGCAATCCTAACAAGTCTGAAAATACAAAGACTAGACAGAATCAACACGAGAACAGGTAGGATTTTGTTTCTTGTAGAACTCATGCCTTTGATTCCTCTACTGATTTTGAAGTTTACTGATGGATATGGGTGCTGTGAGGGTGGTGAGACAGAGGGGGGAGAAAAGAATGATTCTGATGGCACGAGTGAGGGCCAATCTGTCACTTCTGGAGGCATTTTCTTTTACTGTTGTTCGATTTCAACCGCATCAGAGCCACCATCTTATTCTTATTGGAGGGGCA

mRNA sequence

TGGCCAAGCAGCTGTTCCATCTCTTTTCCCGTAGCTGTCAAGAAAGGTTCACAGGGACTGATTACATGTATGTTTCTCTGTACCTTCATCTCAGAACAAAAGTGAGCTCATTATTGGATCAAAATGCTTTTGTCAGGGCAGAATCTGGTAGAATTTTTCTCATTTCTAATCCTGAAAATCCAGAGTTTCCCTTTAGAGGAAATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTATATCATGTACAACTACATCAGTGGTATTCCCTTCTCTTGCTATGATAGCAGCACTGGATCGTCCTCCAGAAAAACATTCTTTCCACCAGGATTGACTGCTGAGAGGTTAAGTTTACTGATGGATATGGGTGCTGTGAGGGTGGTGAGACAGAGGGGGGAGAAAAGAATGATTCTGATGGCACGAGTGAGGGCCAATCTGTCACTTCTGGAGGCATTTTCTTTTACTGTTGTTCGATTTCAACCGCATCAGAGCCACCATCTTATTCTTATTGGAGGGGCA

Coding sequence (CDS)

ATGTATGTTTCTCTGTACCTTCATCTCAGAACAAAAGTGAGCTCATTATTGGATCAAAATGCTTTTGTCAGGGCAGAATCTGGTAGAATTTTTCTCATTTCTAATCCTGAAAATCCAGAGTTTCCCTTTAGAGGAAATCAAGTTTTCATCACAAAGGAACTCCCAAGAATACCACTTTTCGATCATACGATCTATATCATGTACAACTACATCAGTGGTATTCCCTTCTCTTGCTATGATAGCAGCACTGGATCGTCCTCCAGAAAAACATTCTTTCCACCAGGATTGACTGCTGAGAGGTTAAGTTTACTGATGGATATGGGTGCTGTGAGGGTGGTGAGACAGAGGGGGGAGAAAAGAATGATTCTGATGGCACGAGTGAGGGCCAATCTGTCACTTCTGGAGGCATTTTCTTTTACTGTTGTTCGATTTCAACCGCATCAGAGCCACCATCTTATTCTTATTGGAGGGGCA

Protein sequence

MYVSLYLHLRTKVSSLLDQNAFVRAESGRIFLISNPENPEFPFRGNQVFITKELPRIPLFDHTIYIMYNYISGIPFSCYDSSTGSSSRKTFFPPGLTAERLSLLMDMGAVRVVRQRGEKRMILMARVRANLSLLEAFSFTVVRFQPHQSHHLILIGGA
Homology
[Close]
BLAST of Carg07605 vs. NCBI nr
Match: KAG7019745.1 (hypothetical protein SDJN02_18708, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MYVSLYLHLRTKVSSLLDQNAFVRAESGRIFLISNPENPEFPFRGNQVFITKELPRIPLF 60
           MYVSLYLHLRTKVSSLLDQNAFVRAESGRIFLISNPENPEFPFRGNQVFITKELPRIPLF
Sbjct: 1   MYVSLYLHLRTKVSSLLDQNAFVRAESGRIFLISNPENPEFPFRGNQVFITKELPRIPLF 60

Query: 61  DHTIYIMYNYISGIPFSCYDSSTGSSSRKTFFPPGLTAERLSLLMDMGAVRVVRQRGEKR 120
           DHTIYIMYNYISGIPFSCYDSSTGSSSRKTFFPPGLTAERLSLLMDMGAVRVVRQRGEKR
Sbjct: 61  DHTIYIMYNYISGIPFSCYDSSTGSSSRKTFFPPGLTAERLSLLMDMGAVRVVRQRGEKR 120

Query: 121 MILMARVRANLSLLEAFSFTVVRFQPHQSHHLILIGGA 159
           MILMARVRANLSLLEAFSFTVVRFQPHQSHHLILIGGA
Sbjct: 121 MILMARVRANLSLLEAFSFTVVRFQPHQSHHLILIGGA 158

[Close]
BLAST of Carg07605 vs. NCBI nr
Match: XP_023519523.1 (TITAN-like protein isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-38
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1   MYVSLYLHLRTKVSSLLDQNAFVRAESGRIFLISNPENPEFPFRGNQVFITKELPRIPLF 60
           MYVSLYLHLRTKVSSLLDQNAFVRAESGRIFLISNPENPEFPFRGNQVFITKELPRIPLF
Sbjct: 447 MYVSLYLHLRTKVSSLLDQNAFVRAESGRIFLISNPENPEFPFRGNQVFITKELPRIPLF 506

Query: 61  DHTIYIMYNYISGIPFSCYDSST 84
           DHTIYI+YNYISG+PFSCYDSST
Sbjct: 507 DHTIYIVYNYISGVPFSCYDSST 529

The following BLAST results are available for this feature:
BLAST of Carg07605 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019745.11.7e-81100.00hypothetical protein SDJN02_18708, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023519523.11.8e-3897.59TITAN-like protein isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg07605 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07605 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07605 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07605-RACarg07605-RAmRNA