Carg07588 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg07588
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 8004455 .. 8004707 (-)
RNA-Seq ExpressionCarg07588
SyntenyCarg07588
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGCGATGGTGTTGCCTGTCGAAATCAATCAATCCGATAAGCGATACCGTGATGTTGATGCAGAGATTCGGCTTCGAGTGGAGAAGTGGAGGGTCTCGTACATTTCAGTTCCTCCGCCGTTCGTGGTGGCGTTGGCTAATTCGGAGTTGGCGGCGAAGTACGTCCCAAGTTTTCTTCCAATTTAGGGTTGCGGCATTGCTGCTCTTGGGGAAGAAGGTCGAGAAATTCCATGAGAAGTTGCCCTAA

mRNA sequence

ATGGAGAAGGCGATGGTGTTGCCTGTCGAAATCAATCAATCCGATAAGCGATACCGTGATGTTGATGCAGAGATTCGGCTTCGAGTGGAGAAGTGGAGGGTCTCGTACATTTCAGTTCCTCCGCCGTTCGTGGTGGCGTTGGCTAATTCGGAGTTGGCGGCGAAGGTTGCGGCATTGCTGCTCTTGGGGAAGAAGGTCGAGAAATTCCATGAGAAGTTGCCCTAA

Coding sequence (CDS)

ATGGAGAAGGCGATGGTGTTGCCTGTCGAAATCAATCAATCCGATAAGCGATACCGTGATGTTGATGCAGAGATTCGGCTTCGAGTGGAGAAGTGGAGGGTCTCGTACATTTCAGTTCCTCCGCCGTTCGTGGTGGCGTTGGCTAATTCGGAGTTGGCGGCGAAGGTTGCGGCATTGCTGCTCTTGGGGAAGAAGGTCGAGAAATTCCATGAGAAGTTGCCCTAA

Protein sequence

MEKAMVLPVEINQSDKRYRDVDAEIRLRVEKWRVSYISVPPPFVVALANSELAAKVAALLLLGKKVEKFHEKLP
Homology
[Close]
BLAST of Carg07588 vs. NCBI nr
Match: KAG7019730.1 (hypothetical protein SDJN02_18693, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 6.5e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MEKAMVLPVEINQSDKRYRDVDAEIRLRVEKWRVSYISVPPPFVVALANSELAAKVAALL 60
          MEKAMVLPVEINQSDKRYRDVDAEIRLRVEKWRVSYISVPPPFVVALANSELAAKVAALL
Sbjct: 1  MEKAMVLPVEINQSDKRYRDVDAEIRLRVEKWRVSYISVPPPFVVALANSELAAKVAALL 60

Query: 61 LLGKKVEKFHEKLP 75
          LLGKKVEKFHEKLP
Sbjct: 61 LLGKKVEKFHEKLP 74

[Close]
BLAST of Carg07588 vs. NCBI nr
Match: KAG6584139.1 (hypothetical protein SDJN03_20071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MEKAMVLPVEINQSDKRYRDVDAEIRLRVEKWRVSYISVPPPFVVALANSELAAK 56
          MEKAMVLPVEINQSDKRYRDVDAEIRLRVEKWRVSYISVPPPFVVALANSELAAK
Sbjct: 1  MEKAMVLPVEINQSDKRYRDVDAEIRLRVEKWRVSYISVPPPFVVALANSELAAK 55

The following BLAST results are available for this feature:
BLAST of Carg07588 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019730.16.5e-31100.00hypothetical protein SDJN02_18693, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584139.11.8e-20100.00hypothetical protein SDJN03_20071, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg07588 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07588 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg07588 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07588-RACarg07588-RAmRNA