Carg07578 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07578
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	26S proteasome non-ATPase regulatory subunit 6 homolog
Location	Carg_Chr13: 7956804 .. 7958454 (+)
RNA-Seq Expression	Carg07578
Synteny	Carg07578

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCTTGTTTGAAGAAGGTGGTGATTGGGAAAGAAAGAATCGTCTGAAGGTGTATGAAGGCTTGTACTGCCTGTCCACTCGAAACTTTAAGAAGGCAGCCAACTTGTTTCTGGATTCCATCTCAACTTTCACCACATATGAGCTTTTTCCTTACGACACATTCATATTTTATACTGTTCTCACAAGCATTATTTCATTGGATAGAGTGTCTCTAAAGCAAAAGGTATATCCACGGATTTGCAGTCAGCTTGTTTTTAATTTTTTTTCTTTTTGTAACGTCAATTTTAATTTATTTCCTGTAGGTAGTTGATGCTCCCGAGATATTGACAGTGATCGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCATTGTATGACTGTCAATATAAATCATTTTTTTCAGCCTTTGGTAAGTGGAAATGTAACTCAATGTCTAAAACTATGATTGATGGTCTGCTAGTTTCGTGTCTCATATAGTTCCTTCAACAAATGCAGCTGGTCTGACCGAGCAAATAAAATTAGACCGTTATTTGCATCCGCACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGTAAGTGGTCATTCATTGTTGTACTTTTTAAAATATTTGTGAATAGAAGAAGCTTTTGTTATCTGCATGATGTATAAAGGACCGTTCTCCCTCTCATAAATTCTCTTTATGGTTTCAGGGAGTTATCTCGCTTTATTGCCGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAATCGTCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGATGTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTGTAACTAGGCCTTTAGTTGATTTGAAATTTGTTCGAGCCAAAAAGCCTCAATGCACGAATGAAGTTTGAGCATTAGAACTTCGTGAAAATGGCGATGTAATATTGTTTCGAACATATCAACATCTCTGGCTTGCTGTTATCACTGTCGCTTGATTTTGTTTATTAACCAAGAACCTTATTAGAAATTCTATGAATGCTCTAAACCTACCCTTTTCATGCTCTTTTCTTCTTCTAGGTGCTTGCTTGTTCTTTGGCAGTTTATATTGCCTCTTGTGTACTGAGTGGAGTAAACAAATCCACGGTGATTTAACTCTTTGCTTATTTCAAACAAGTGGTAGGAATGCTATTTCTGATCCAGGATTACCTAGCTTCTTGCTTGACGATGATGCTGTAAATGCAATGCCCATACCTTTCAGCTGTAGAATCAATCTCCAAGAGCCAGAAATTGTGGCAAATAGCTTGTAATGGTATGTGTATGTGCTTTGGATATTCATTGAACTTAAAAGTGCTTGCAAATGCAAATGTACTTTGGATATTTATTGAACTCTTAAATGGGGAATTATTTCAACTTTGAATGTACTTACTCTTTATTAGTTTGGGATAAATAACAATTTCTACCTCGCTAGCGAGACATTAGGCGGTGTGCTAACAATGATACTGGACTCCAAAGAAGGTGGATTGTGAGATCCCGC

mRNA sequence

ATGCCAGCTTGTTTGAAGAAGGTAGTTGATGCTCCCGAGATATTGACAGTGATCGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCATTGTATGACTGTCAATATAAATCATTTTTTTCAGCCTTTGCTGGTCTGACCGAGCAAATAAAATTAGACCGTTATTTGCATCCGCACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGGAGTTATCTCGCTTTATTGCCGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAATCGTCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGATGTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTGTAACTAGGCCTTTAGTTGATTTGAAATTTGTTCGAGCCAAAAAGCCTCAATGCACGAATGAAGTTTGAGCATTAGAACTTCGTGAAAATGGCGATGTAATATTGTTTCGAACATATCAACATCTCTGGCTTGCTGTTATCACTGTCGCTTGATTTTGTTTATTAACCAAGAACCTTATTAGAAATTCTATGAATGCTCTAAACCTACCCTTTTCATGCTCTTTTCTTCTTCTAGGTGCTTGCTTGTTCTTTGGCAGTTTATATTGCCTCTTGTGTACTGAGTGGAGTAAACAAATCCACGGTGATTTAACTCTTTGCTTATTTCAAACAAGTGGTAGGAATGCTATTTCTGATCCAGGATTACCTAGCTTCTTGCTTGACGATGATGCTGTAAATGCAATGCCCATACCTTTCAGCTGTAGAATCAATCTCCAAGAGCCAGAAATTGTGGCAAATAGCTTGTAATGGTATGTGTATGTGCTTTGGATATTCATTGAACTTAAAAGTGCTTGCAAATGCAAATGTACTTTGGATATTTATTGAACTCTTAAATGGGGAATTATTTCAACTTTGAATGTACTTACTCTTTATTAGTTTGGGATAAATAACAATTTCTACCTCGCTAGCGAGACATTAGGCGGTGTGCTAACAATGATACTGGACTCCAAAGAAGGTGGATTGTGAGATCCCGC

Coding sequence (CDS)

ATGCCAGCTTGTTTGAAGAAGGTAGTTGATGCTCCCGAGATATTGACAGTGATCGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCATTGTATGACTGTCAATATAAATCATTTTTTTCAGCCTTTGCTGGTCTGACCGAGCAAATAAAATTAGACCGTTATTTGCATCCGCACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACTATCGAAGCTATGGCAAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGGAGTTATCTCGCTTTATTGCCGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAATCGTCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGATGTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTGTAA

Protein sequence

MPACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL

Homology

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BLAST of Carg07578 vs. NCBI nr
Match: KAG7019720.1 (26S proteasome non-ATPase regulatory subunit 6-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MPACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHF 60
           MPACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHF
Sbjct: 1   MPACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHF 60

Query: 61  RYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAG 120
           RYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAG
Sbjct: 61  RYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAG 120

Query: 121 VLETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           VLETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 121 VLETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 157

[Close]

BLAST of Carg07578 vs. NCBI nr
Match: KAG6584131.1 (26S proteasome non-ATPase regulatory subunit 6-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.4 bits (760), Expect = 7.5e-77
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. NCBI nr
Match: XP_023519947.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 7.5e-77
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. NCBI nr
Match: XP_022923807.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata] >XP_023000805.1 26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 7.5e-77
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. NCBI nr
Match: XP_022137498.1 (26S proteasome non-ATPase regulatory subunit 6 homolog [Momordica charantia])

HSP 1 Score: 295.4 bits (755), Expect = 2.8e-76
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

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BLAST of Carg07578 vs. ExPASy Swiss-Prot
Match: Q93Y35 (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN7 PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.4e-72
Identity = 134/152 (88.16%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTV+GK+P+LS+FLNSLY+CQYK+FFSAFAG+  QIK DRYL+PHFR+YMR
Sbjct: 236 QKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMR 295

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVT+EAMAKAFGVSV+FID ELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 296 EVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETN 355

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPD+KNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 356 RPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387

[Close]

BLAST of Carg07578 vs. ExPASy Swiss-Prot
Match: Q8W425 (26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=RPN7 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.2e-71
Identity = 135/151 (89.40%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 7   KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMRE 66
           KVVDAPEIL VIGKVP+LS+FLNSLY+CQYKSFF+AF+GLTEQIKLDRYL PHFRYYMRE
Sbjct: 239 KVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMRE 298

Query: 67  VRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNR 126
           VRTVVYSQFLESYKSVT+EAMA AFGV+V+FIDLELSRFIAAGKLHCKIDKVA VLETNR
Sbjct: 299 VRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNR 358

Query: 127 PDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           PD++NA YQATIKQGD LLNRIQKLSRVIDL
Sbjct: 359 PDARNAFYQATIKQGDFLLNRIQKLSRVIDL 389

[Close]

BLAST of Carg07578 vs. ExPASy Swiss-Prot
Match: Q9V3G7 (26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster OX=7227 GN=Rpn7 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-47
Identity = 89/151 (58.94%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 7   KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMRE 66
           KV+   EI  V+  +P +  FL SLY+CQY++F+   AG+ +Q++LD  +HPH+RYY+RE
Sbjct: 239 KVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVRE 298

Query: 67  VRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNR 126
           +R + Y+Q LESY+S+T++ MA++FGV+VE+ID EL+RFIAAG+LH K+D+V G++ETNR
Sbjct: 299 MRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNR 358

Query: 127 PDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           PD+KN  YQATIKQGD+LLNRIQKLSRVI++
Sbjct: 359 PDNKNWQYQATIKQGDLLLNRIQKLSRVINI 389

[Close]

BLAST of Carg07578 vs. ExPASy Swiss-Prot
Match: Q15008 (26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-45
Identity = 91/156 (58.33%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 2   PACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFR 61
           P   +KV+   EIL V+  +P +  +L SLY+C+Y  FF + A + +++K D    PH+R
Sbjct: 234 PDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYR 293

Query: 62  YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGV 121
           YY+RE+R   YSQ LESY+S+T+  MA+AFGV VEFID ELSRFIAAG+LHCKIDKV  +
Sbjct: 294 YYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEI 353

Query: 122 LETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           +ETNRPDSKN  YQ TIK+GD+LLNR+QKLSRVI++
Sbjct: 354 VETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389

[Close]

BLAST of Carg07578 vs. ExPASy Swiss-Prot
Match: Q99JI4 (26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.6e-45
Identity = 90/156 (57.69%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 2   PACLKKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFR 61
           P   +KV+   EIL V+  +P +  +L SLY+C+Y  FF + A + +++K D    PH+R
Sbjct: 234 PDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYR 293

Query: 62  YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGV 121
           YY+RE+R   YSQ LESY+S+T+  MA+AFGV V+FID ELSRFIAAG+LHCKIDKV  +
Sbjct: 294 YYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEI 353

Query: 122 LETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           +ETNRPDSKN  YQ TIK+GD+LLNR+QKLSRVI++
Sbjct: 354 VETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389

[Close]

BLAST of Carg07578 vs. ExPASy TrEMBL
Match: A0A6J1KJC5 (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495143 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. ExPASy TrEMBL
Match: A0A6J1E761 (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431410 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. ExPASy TrEMBL
Match: A0A6J1CAI0 (26S proteasome non-ATPase regulatory subunit 6 homolog OS=Momordica charantia OX=3673 GN=LOC111008928 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. ExPASy TrEMBL
Match: A0A5A7UJH7 (26S proteasome non-ATPase regulatory subunit 6-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004390 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLS+FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. ExPASy TrEMBL
Match: E5GBW6 (26S proteasome non-ATPase regulatory subunit OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTVIGKVPYLS+FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR
Sbjct: 235 QKVVDAPEILTVIGKVPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 294

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 295 EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 354

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPDSKNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 355 RPDSKNALYQATIKQGDFLLNRIQKLSRVIDL 386

[Close]

BLAST of Carg07578 vs. TAIR 10
Match: AT4G24820.1 (26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain )

HSP 1 Score: 272.3 bits (695), Expect = 2.4e-73
Identity = 134/152 (88.16%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTV+GK+P+LS+FLNSLY+CQYK+FFSAFAG+  QIK DRYL+PHFR+YMR
Sbjct: 236 QKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMR 295

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVT+EAMAKAFGVSV+FID ELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 296 EVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETN 355

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPD+KNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 356 RPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387

[Close]

BLAST of Carg07578 vs. TAIR 10
Match: AT4G24820.2 (26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain )

HSP 1 Score: 272.3 bits (695), Expect = 2.4e-73
Identity = 134/152 (88.16%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 6   KKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMR 65
           +KVVDAPEILTV+GK+P+LS+FLNSLY+CQYK+FFSAFAG+  QIK DRYL+PHFR+YMR
Sbjct: 236 QKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMR 295

Query: 66  EVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETN 125
           EVRTVVYSQFLESYKSVT+EAMAKAFGVSV+FID ELSRFIAAGKLHCKIDKVAGVLETN
Sbjct: 296 EVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETN 355

Query: 126 RPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 158
           RPD+KNALYQATIKQGD LLNRIQKLSRVIDL
Sbjct: 356 RPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387

The following BLAST results are available for this feature:

BLAST of Carg07578 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019720.1	1.5e-80	100.00	26S proteasome non-ATPase regulatory subunit 6-like protein, partial [Cucurbita ...	[more]
KAG6584131.1	7.5e-77	99.34	26S proteasome non-ATPase regulatory subunit 6-like protein, partial [Cucurbita ...	[more]
XP_023519947.1	7.5e-77	99.34	26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita pepo subsp. pe...	[more]
XP_022923807.1	7.5e-77	99.34	26S proteasome non-ATPase regulatory subunit 6 homolog [Cucurbita moschata] >XP_...	[more]
XP_022137498.1	2.8e-76	98.68	26S proteasome non-ATPase regulatory subunit 6 homolog [Momordica charantia]	[more]

BLAST of Carg07578 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Y35	3.4e-72	88.16	26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana O...	[more]
Q8W425	2.2e-71	89.40	26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica O...	[more]
Q9V3G7	1.3e-47	58.94	26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster OX=722...	[more]
Q15008	1.6e-45	58.33	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 ...	[more]
Q99JI4	4.6e-45	57.69	26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6...	[more]

BLAST of Carg07578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJC5	3.6e-77	99.34	26S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucurbita maxima OX=36...	[more]
A0A6J1E761	3.6e-77	99.34	26S proteasome non-ATPase regulatory subunit 6 homolog OS=Cucurbita moschata OX=...	[more]
A0A6J1CAI0	1.4e-76	98.68	26S proteasome non-ATPase regulatory subunit 6 homolog OS=Momordica charantia OX...	[more]
A0A5A7UJH7	4.0e-76	98.03	26S proteasome non-ATPase regulatory subunit 6-like protein OS=Cucumis melo var....	[more]
E5GBW6	4.0e-76	98.03	26S proteasome non-ATPase regulatory subunit OS=Cucumis melo subsp. melo OX=4126...	[more]

BLAST of Carg07578 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24820.1	2.4e-73	88.16	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain	[more]
AT4G24820.2	2.4e-73	88.16	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000717	Proteasome component (PCI) domain	SMART	SM00088	PINT_4	coord: 58..141 e-value: 3.4E-22 score: 89.8
IPR000717	Proteasome component (PCI) domain	PFAM	PF01399	PCI	coord: 24..125 e-value: 7.5E-17 score: 61.8
IPR000717	Proteasome component (PCI) domain	PROSITE	PS50250	PCI	coord: 1..129 score: 20.880733
None	No IPR available	SMART	SM00753	PINT	coord: 58..141 e-value: 3.4E-22 score: 89.8
None	No IPR available	GENE3D	1.25.40.570		coord: 2..108 e-value: 4.3E-28 score: 100.4
None	No IPR available	PANTHER	PTHR14145:SF3	OS02G0600100 PROTEIN	coord: 6..157
IPR019585	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	PANTHER	PTHR14145	26S PROTESOME SUBUNIT 6	coord: 6..157
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 53..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07578-RA	Carg07578-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000502	proteasome complex