Carg07278 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07278
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 8727122 .. 8730453 (-)
RNA-Seq Expression	Carg07278
Synteny	Carg07278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTACAGAGCCCAACACGTGTGAGACATGGTCGACGCGCCCGGAGGCACTTGACATCAATCACATTCACGCCGGCAGTGGCTCGCCTAGAGAGCGTAATTGTCCATCAGATGTGCATTCGCACGCTGCCAAAGCTGGGTTAATCGGCCCGAGGCGCAGTTTTTCTCTTTTCCCGGAACAAAATACTGAGCACACAAGTAGATGGTAATAGTTATTGGTCTCGAAGGCAATCTTTGTGGGCTAACAACAAAAGCTCTTCTCACATCTTTATCTCGTCCTCCATAAATTTGGCTGGCCTCAAATTGCAAACAGCATTCTGCATTTTTGTGCTCAGCTTTTGTTCTTGTGAAATATCTTATTTGGCTTATTAGTTAGACACTTCTATGTAGCTTTCACGCAACCTTGAAGAATGGGCAGCATATTTGCTCAACCAAAACCGCCAAACTTCGGCGATAAATTTGATTTAGGTACTGTTACATAAGTTGATCTTGCAAAGATCCTAATGAATTATTGTGTTTGGCTTCAAGGAACTGCAAATCTTTTCTTTTTTTTTGGTTGTTAACTTTTCTGTTTCAGGACTAGAAGCAATTTATTTAATTTTTAAAACTTCAGTTTGATTAAGTGCCTAAACTGAGTTCTTTCTTCTCACAGCCTTAAATATCTTAAATATCTGTTCCCTTCCGTGAATTTGGTATCTATTGATAATTTTGAATCTTAACGAATGCGCATGCTCTCTGCCCGCAGTTTTCTATTTGTGTCTATATATATTTTTTAATTTAATACGCCATTTCAGTTTCTGTGTTTTGAAGGGAAGCATATTTATTTCCATTCCGCATTTATTTATTTTAAAAACATCATTATTGTCGTCACCAAAGAATAGACACAACTAGCCAACCTGCATATTCATTAGGACTTCTTTTTATTCCCTCCCTAATAAATAAGCATGACCAGAGAATATTCTGCTGCAACGCTTTGAGACTTTACTTGTTGTGTTATTGTAATTTAACTTTAATTTTTGCGTCAGGCGTTCAAGAGTGTGCTGGATAAATACTTGGGAGTAAACTTAAATGGGCCAAATCCGGGATCTTGAAGGGGAAGTCCTTTAAAGAAATTGGTCCTGCAGATTCTGGAGCATATCGATGCTATCCATTTTCTAAGCTTTTCCTCGATTGGTACTTTTACGTATAAGTTATCCATAGCTATATAGAATAAAAATCATTACCTATTTTAGGCATTGCTTTGTAATTTATTTCAGACCCATTTTATTTTGTATAGAGAACAAAGTAGAGAGTGGCTTAAAATCAACGTGATTTAAGTTTCAACTTTATACTCCCAGTATCTCCATTTATCATCAAGTGTTTACATAAAAACTGCCGAAGTAAACCAGCAGCGAATGGACCTTTACTTTTACCTCATTTCTTCTAGCCAATGAAATCAAATTCCTGTAGTGAATAAGGTTAATGAGCTAAAATATCGTAGTTCAGGAGAAATGATGTAAGCAGCAAGTGAACCTAAATGCTCTTTCCTGGTACTTGAGTTGATGATTGGATTACCTAGCAGCTTCTGTTTATCTACAGATGAGACTGACAAGTACATTAGAATGCACAGGCAATGACCCCATTTTCAATTACTCTCCTATTTTGACCCTTTCCCCCCTATGATATGTCATTATTCTTCTGGCTGTATGTGAACTGAACTTGCTAAGATGACAACAAGGGTAGGAAAACCATTCTGATAGGCCTAGTTAGAACGAAAAAGAACATTGTGGAGGGATATAGATAGGGAATGTAATTAGTAATGAATATTCGTTTCTTGTAGAGTGGGGAGTTCCAAGATGGGATTTAGAAAAAAAGATGAGGGGTAGCATAGGGGTCTGCAGTAGAAGGGGGGAAAAAAAGGAAAGAAAAGCATTGGAAAGAAGGGTCTGTAAATAATCGAGATTGGAAGGAAGAAAAGAGGGAAAAGAAAAGGTAGCTGAGATGAGATTCCCTGATGGATGATGACATGGGCAGGTAATTTAATAGAAGAAGAGGCAAGGGGAGAGGGAATAGAAGCCTTTTGATTTTTGTCTGTTTGTGCAGCTCAAAGGGAGATAAAAAAAAAAAAAAGAAAAAAAGATGCAGTCTTTTTTACCAGGCAAATGGCATATTGTACCTTAATCCTGTTACTCATGCACATACTTTCTAAAAGCTAGGATATACCATAATGCCCAACCCTCCTTTCATTAATCCCCAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTTTTTGTCTCTCCCTGCTCTCTCTCTTTCTTTCTTTGTGAATATCCTAACCTTTTCTTTGGTTAAGTTGATCAGCTTTGCCATTTTTTAAACTGCGTGTGTGGTTTTTTTTTTTTATAAAAAAAGATATTCCAAAACCCTTTTATCCAAAGTAAGCTGACTGGCATTTTTACGTGGCTGCAGGAATCACATAAAGGTAGATGCACCACTTTGCATTATCACCATGGCTTTTTACTCTCATCAGCTTGGGAGAATATAAAATATATACACATACTAAGCTGATTGAACCTCTGGTAAATTCCTGTGCTATCTTTTCTTCTGCTTCAACATGAAGTAAAATATATACACATTGGTTGGTTGAATGTTCACATTTCTATCCTATAATTACACTCATATTCCGATCAAATATTAGGAAAGTCTAGTCATAGAACATGAGAATGTATCCATATAAAAAATCTTCCCCTTTTTTGTTTGACAGTAAAGTATCTGATTTCTTTTCAGGCATGCTGAAGAATATGTTGCATCAATGATTGATATGATTATCTGATAACAGTAGACTAGAAAAGCAGAGAAGGACAAGGTTTTAGTCAATAATTGGGATGTTATTGCAGGTTAAGCTGGCTACTAAAGGTTGTGTTGTGGGGAATATGCACAGAAATTGATAAAGCCCCTCTTAGCAACAACAGTAACAAAAGAAAGACTCACCACAGAATTGCAATTCAATCTTCCAGAGCTCTTTGTTGGTATCATTTTCATCCCCGTTGACATTTTCTTCTTCTTCTTTTTTTTTTTTCTTTATTTTCCTTTTCTTCCTTTAGGTGTTAGTTTGCAGCAGCACCCAAATCCCGGACCACCACCACAAACACTCGCTCACTGAGGCACAAATCCACATAACACCATCAACTTAGGTTGCCTTTATTTTTTAAGAGAGGAAAAAAAGAAAAAAACACTCGCACTTGCAACTAAATTTTACTGCTCCCTCCATCTGACTTCACAAAAGGCTTCTCTATTCAAATAGTTCCAGTAATTTCTCAGTTCCTCTAGAAAAGTTGTGAAGGGG

mRNA sequence

ATGAGTACAGAGCCCAACACGTGTGAGACATGGTCGACGCGCCCGGAGGCACTTGACATCAATCACATTCACGCCGGCAGTGGCTCGCCTAGAGAGCGTAATTGTCCATCAGATGTGCATTCGCACGCTGCCAAAGCTGGGTTAATCGGCCCGAGGCGCAGTTTTTCTCTTTTCCCGGAACAAAATACTGAGCACACAAGTAGATGCCTTAAATATCTTAAATATCTGTTCCCTTCCGTGAATTTGACTAGAAAAGCAGAGAAGGACAAGGTTTTAGTCAATAATTGGGATGTTATTGCAGGTGTTAGTTTGCAGCAGCACCCAAATCCCGGACCACCACCACAAACACTCGCTCACTGAGGCACAAATCCACATAACACCATCAACTTAGGTTGCCTTTATTTTTTAAGAGAGGAAAAAAAGAAAAAAACACTCGCACTTGCAACTAAATTTTACTGCTCCCTCCATCTGACTTCACAAAAGGCTTCTCTATTCAAATAGTTCCAGTAATTTCTCAGTTCCTCTAGAAAAGTTGTGAAGGGG

Coding sequence (CDS)

ATGAGTACAGAGCCCAACACGTGTGAGACATGGTCGACGCGCCCGGAGGCACTTGACATCAATCACATTCACGCCGGCAGTGGCTCGCCTAGAGAGCGTAATTGTCCATCAGATGTGCATTCGCACGCTGCCAAAGCTGGGTTAATCGGCCCGAGGCGCAGTTTTTCTCTTTTCCCGGAACAAAATACTGAGCACACAAGTAGATGCCTTAAATATCTTAAATATCTGTTCCCTTCCGTGAATTTGACTAGAAAAGCAGAGAAGGACAAGGTTTTAGTCAATAATTGGGATGTTATTGCAGGTGTTAGTTTGCAGCAGCACCCAAATCCCGGACCACCACCACAAACACTCGCTCACTGA

Protein sequence

MSTEPNTCETWSTRPEALDINHIHAGSGSPRERNCPSDVHSHAAKAGLIGPRRSFSLFPEQNTEHTSRCLKYLKYLFPSVNLTRKAEKDKVLVNNWDVIAGVSLQQHPNPGPPPQTLAH

Homology

[Close]

BLAST of Carg07278 vs. NCBI nr
Match: KAG7014468.1 (hypothetical protein SDJN02_24646, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.0 bits (650), Expect = 3.2e-64
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MSTEPNTCETWSTRPEALDINHIHAGSGSPRERNCPSDVHSHAAKAGLIGPRRSFSLFPE 60
           MSTEPNTCETWSTRPEALDINHIHAGSGSPRERNCPSDVHSHAAKAGLIGPRRSFSLFPE
Sbjct: 1   MSTEPNTCETWSTRPEALDINHIHAGSGSPRERNCPSDVHSHAAKAGLIGPRRSFSLFPE 60

Query: 61  QNTEHTSRCLKYLKYLFPSVNLTRKAEKDKVLVNNWDVIAGVSLQQHPNPGPPPQTLAH 120
           QNTEHTSRCLKYLKYLFPSVNLTRKAEKDKVLVNNWDVIAGVSLQQHPNPGPPPQTLAH
Sbjct: 61  QNTEHTSRCLKYLKYLFPSVNLTRKAEKDKVLVNNWDVIAGVSLQQHPNPGPPPQTLAH 119

The following BLAST results are available for this feature:

BLAST of Carg07278 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014468.1	3.2e-64	100.00	hypothetical protein SDJN02_24646, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg07278 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07278 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07278 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07278-RA	Carg07278-RA	mRNA