Carg07226 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07226
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Auxin-binding protein
Location	Carg_Chr17: 8432324 .. 8434456 (+)
RNA-Seq Expression	Carg07226
Synteny	Carg07226

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAGGGTTGCCTCTAGTAAGAAATATCAGTGAGCTTCCACAAGATAACTATGGAAGGGGAGGCTTGTCTCACATTACCGTTGCAGGTTCACTATTGCATGGGCTGAAGGAGGTATGGCGTGTTCATCCTTCGAGGTTCTAGAACCTAGCCAAGCTTTGTAATGAAACAAAAGATATTTTTTATTGGCTTGTGCTAGCCATTTACCACTTTACTGAATTTTGCAGGTGGAGGTGTGGCTCCAAACATTTTCCCCTGGATCACACACACCTATTCACAGGCACTCGTGTGAAGAAGTTTTTCTGGTTTTGAAGGGGACTGGCACTCTCTTTCTCGCACCTAGTTCTCATGGAAAGTACCCTGGAACACCAAAAGAATTTTCTATCTATTCAAACTGTACATTTCACATACCTGTTAATGATGCTCACCAGGTACGTTGTTCTACTTAAATCCCTTCCTTGCTTTAGAAGGATCCATAAATATTGTGGGCTTAGTTGATATACATCATTTCTGATTGCTTACAACTTAGGTTATTAAACCCAATAATTTCGTTTGAGGTAGACTATGAAAATAACCCAAGTCTCAAATGTCTAGTCTTGCTATCCTTAGAATTTTTGTTGCCATGCAATGAGTATTGGAAAGCTTATGGAAGCCTTCTTTTTTAAAGATGGCGAGGGTGAGTGGTTCGAAAAAATTGGAAGTTCAATGGATCTAAAGAAAATAAATCAAGCTAGGATGAATGAGACTTTACTTTGCCAATTGAAAAATTTTCTATGGCCTAAGCAAAACATTCAAAATGAGAGAAATAGCACAAATTACTCAGCTGTCAAATAAAAGCTAGGGTAAGTGCTAAAATAACCTCACTTCATAGGATTTTCGGTAGTCAACAGAAAACTACTGGTTCATTGAATCTTATGATATATAATTTTCTTTATGAGGGTCGGGAGTGTATTTGCTCTTGCAAATGAATTTTGGTACAAGGAGCATCTTGAATTAGGGATAGGGAGGAAAGAAGGGCGTAGTTTCTTGATTTCTAAACCTCCTTCTCATGTGAATCTTGCTTGAATGTTCTTGGTTATCTGTCCTTTTAAACTGCCATTTTGCTAATTGGGAATTTGGAAGGTGAAACTACCAAAAAAGGTCAATGTTTCTGCTCAGTTTGTGGTTAATGAGATTGATTGTTCTTTGGGTCTTGAACGGGGATTTGCGTCTACATGTTTTTTGATGAAAAATTAAAACAAGGCAAAAGCCTTCAAACTTCTTCATTGCATGATTTTCCAGTGAAATGAGAATGCTTGCTTTCCATCCCACCCCATGGAAGAGAGGAAACACAATCAGGCTTAGGCCTAGAGATATATGCATATGCGAACTGAGGACGGGTTTTTAGAGTTAGCTACCCTCTTATACTGTCTTTGAGGAGTTGAGGCCTGACCTCCTCCTCCCTTTGTTTTATGGGATAATGAAGTTCACTGTTCACTGTATATATATATATACACACACACATATATATGGTTATACGTTCCTGTTCTTTTAGTGGATCAAAGAATCATGAAATCTGGCTTTCAGATCAAACCTTTCTCCAGTGACTTTCTACATTGATCTGTGAAATGTGGACCGATGTGCATGGTATCATCAGTTTAAGCCCCTGATCATGCTTGCAATGTTTTTTTTTTTTTTTTTTTTTTTTTCAAATTATATTTTCAGTTTATCAAATACACTACAATGTTCAAACAATTCTCAACTCAAACCAAGCCTCTGATATCACTTAAATGGTTAACCATTAACACAGATATGGAATACGAATGAACATGAGGATTTGCAGATGCTTGTCATCATTTCCAGGCCACCAGCCAAAGTGTGCGTATTTTTCTTCCATTTTACATTATGTATTTCATCATTATTTGTTTTTATAACTCGAGCTTAACGCATTATTACATTTGCTTGAAGAAGCTCATTATGGTACTTAGGAGTAATTTGAAGGTGAGACTCATGAACAACCAAGATCTTTTGGTTTATGGTTGCAGGTTTATTTATGAGGACTGGGCCATGCCCCATACTGCTGCAAGATTGAAGTTCCCCTACTATTGGGATGAACAGTGTTTTGAAGCGCCCGTAAAGGATGAACTTTGA

mRNA sequence

ATGGATCCAGGGTTGCCTCTAGTAAGAAATATCAGTGAGCTTCCACAAGATAACTATGGAAGGGGAGGCTTGTCTCACATTACCGTTGCAGGTTCACTATTGCATGGGCTGAAGGAGGTGGAGGTGTGGCTCCAAACATTTTCCCCTGGATCACACACACCTATTCACAGGCACTCGTGTGAAGAAGTTTTTCTGGTTTTGAAGGGGACTGGCACTCTCTTTCTCGCACCTAGTTCTCATGGAAAGTACCCTGGAACACCAAAAGAATTTTCTATCTATTCAAACTGTACATTTCACATACCTGTTAATGATGCTCACCAGATATGGAATACGAATGAACATGAGGATTTGCAGATGCTTGTCATCATTTCCAGGCCACCAGCCAAAGTGTTTATTTATGAGGACTGGGCCATGCCCCATACTGCTGCAAGATTGAAGTTCCCCTACTATTGGGATGAACAGTGTTTTGAAGCGCCCGTAAAGGATGAACTTTGA

Coding sequence (CDS)

ATGGATCCAGGGTTGCCTCTAGTAAGAAATATCAGTGAGCTTCCACAAGATAACTATGGAAGGGGAGGCTTGTCTCACATTACCGTTGCAGGTTCACTATTGCATGGGCTGAAGGAGGTGGAGGTGTGGCTCCAAACATTTTCCCCTGGATCACACACACCTATTCACAGGCACTCGTGTGAAGAAGTTTTTCTGGTTTTGAAGGGGACTGGCACTCTCTTTCTCGCACCTAGTTCTCATGGAAAGTACCCTGGAACACCAAAAGAATTTTCTATCTATTCAAACTGTACATTTCACATACCTGTTAATGATGCTCACCAGATATGGAATACGAATGAACATGAGGATTTGCAGATGCTTGTCATCATTTCCAGGCCACCAGCCAAAGTGTTTATTTATGAGGACTGGGCCATGCCCCATACTGCTGCAAGATTGAAGTTCCCCTACTATTGGGATGAACAGTGTTTTGAAGCGCCCGTAAAGGATGAACTTTGA

Protein sequence

MDPGLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEVFLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVIISRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL

Homology

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BLAST of Carg07226 vs. NCBI nr
Match: KAG7014417.1 (Auxin-binding protein T85, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.4 bits (921), Expect = 1.7e-95
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDPGLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSC 60
           MDPGLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSC
Sbjct: 1   MDPGLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSC 60

Query: 61  EEVFLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQML 120
           EEVFLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQML
Sbjct: 61  EEVFLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQML 120

Query: 121 VIISRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           VIISRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL
Sbjct: 121 VIISRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 164

[Close]

BLAST of Carg07226 vs. NCBI nr
Match: XP_022953527.1 (auxin-binding protein T85 [Cucurbita moschata] >KAG6575883.1 Auxin-binding protein T85, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 352.4 bits (903), Expect = 2.0e-93
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 28  GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 87

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII
Sbjct: 88  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 147

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL
Sbjct: 148 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 188

[Close]

BLAST of Carg07226 vs. NCBI nr
Match: XP_023549483.1 (auxin-binding protein T85 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.0e-92
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 28  GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 87

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII
Sbjct: 88  FVVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 147

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPPAKVFIY+DWAMPHTAARLKFPYYWDEQCFEAPVKDEL
Sbjct: 148 SRPPAKVFIYDDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 188

[Close]

BLAST of Carg07226 vs. NCBI nr
Match: XP_022992557.1 (auxin-binding protein T85 [Cucurbita maxima])

HSP 1 Score: 350.1 bits (897), Expect = 1.0e-92
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 28  GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 87

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII
Sbjct: 88  FVVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 147

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPPAKVFIY+DWAMPHTAARLKFPYYWDEQCFEAPVKDEL
Sbjct: 148 SRPPAKVFIYDDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 188

[Close]

BLAST of Carg07226 vs. NCBI nr
Match: XP_022150242.1 (auxin-binding protein T85 isoform X2 [Momordica charantia])

HSP 1 Score: 327.4 bits (838), Expect = 7.0e-86
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGS+LHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 28  GLPLVRNISELPQDNYGRGGLSHITVAGSILHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 87

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKGTGTL+LAP SH KYPGTPKEFSIYSN TF IP+NDAHQ+WNTNEHEDLQMLVII
Sbjct: 88  FVVLKGTGTLYLAPESHEKYPGTPKEFSIYSNSTFIIPINDAHQVWNTNEHEDLQMLVII 147

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPPAKVFIY DW+MPHTAARLKFPY WDEQCFE PVKDEL
Sbjct: 148 SRPPAKVFIYNDWSMPHTAARLKFPYSWDEQCFEPPVKDEL 188

[Close]

BLAST of Carg07226 vs. ExPASy Swiss-Prot
Match: P33490 (Auxin-binding protein T85 OS=Nicotiana tabacum OX=4097 GN=T85 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.8e-77
Identity = 123/162 (75.93%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQ+NYGR GLSH T+AGS+LHG+KE+EVWLQTF+PGS TPIHRHSCEE+
Sbjct: 26  GLPLVRNISELPQENYGRSGLSHTTIAGSVLHGMKEIEVWLQTFAPGSRTPIHRHSCEEI 85

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKG G L+L PSSH KYPG P+EF I+ N TFHIPVND HQ+WNT EHEDLQ+LV+I
Sbjct: 86  FVVLKGQGILYLTPSSHSKYPGNPQEFHIFPNSTFHIPVNDVHQVWNTGEHEDLQVLVVI 145

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPV-KDEL 165
           SRPP KVF+Y+DW+MPHTAA+LKFPYYWDE+C++    KDEL
Sbjct: 146 SRPPVKVFMYDDWSMPHTAAKLKFPYYWDEECYQTTSWKDEL 187

[Close]

BLAST of Carg07226 vs. ExPASy Swiss-Prot
Match: P33491 (Auxin-binding protein T92 OS=Nicotiana tabacum OX=4097 GN=T92 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.0e-75
Identity = 121/162 (74.69%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQ+NYGR GLSH T+AGS+LHG+KE+EVWLQTF+PG  TPIHRHSCEE+
Sbjct: 26  GLPLVRNISELPQENYGRSGLSHTTIAGSVLHGMKEIEVWLQTFAPGFRTPIHRHSCEEI 85

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKG GTL+L PSSH KYPG P+EF I+ N TFHIPVND HQ+WNT E EDLQ+L +I
Sbjct: 86  FIVLKGQGTLYLTPSSHSKYPGNPQEFHIFPNSTFHIPVNDVHQVWNTGEQEDLQVLDVI 145

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPV-KDEL 165
           SRPP KVF+Y+DW+MPHTAA+LKFPYYWDE+C++    KDEL
Sbjct: 146 SRPPVKVFMYDDWSMPHTAAKLKFPYYWDEECYQTTSRKDEL 187

[Close]

BLAST of Carg07226 vs. ExPASy Swiss-Prot
Match: P33487 (Auxin-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=ERABP1 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 9.3e-73
Identity = 123/161 (76.40%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLP+VRNIS+LPQDNYGR GLSH+TVAGS+LHG+KEVE+WLQTF+PGS TPIHRHSCEEV
Sbjct: 40  GLPIVRNISDLPQDNYGRPGLSHMTVAGSVLHGMKEVEIWLQTFAPGSETPIHRHSCEEV 99

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKG+GTL+LA  +HG +PG P EF I++N T HIP+NDAHQ+ NT  HEDLQ+LVII
Sbjct: 100 FVVLKGSGTLYLA-ETHGNFPGKPIEFPIFANSTIHIPINDAHQVKNTG-HEDLQVLVII 159

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPP K+FIYEDW MPHTAARLKFPYYWDEQC +   KDEL
Sbjct: 160 SRPPIKIFIYEDWFMPHTAARLKFPYYWDEQCIQESQKDEL 198

[Close]

BLAST of Carg07226 vs. ExPASy Swiss-Prot
Match: P33488 (Auxin-binding protein 4 OS=Zea mays OX=4577 GN=ABP4 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.9e-66
Identity = 114/158 (72.15%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 7   LVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEVFLV 66
           LVR+IS + Q NYGR G SHITV G+L HG KEVEVWLQTF PG  TPIHRHSCEEVF+V
Sbjct: 49  LVRDISRMQQRNYGREGFSHITVTGALAHGTKEVEVWLQTFGPGQRTPIHRHSCEEVFIV 108

Query: 67  LKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVIISRP 126
           LKG GTL L  SS  KYPG P+E  ++ N TF IPVND HQ+WN+NEHEDLQ+LVIISRP
Sbjct: 109 LKGKGTLLLGSSSL-KYPGQPQEVPVFQNTTFSIPVNDPHQVWNSNEHEDLQVLVIISRP 168

Query: 127 PAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           P K+FIY+DW+MPHTAA+LKFPY+WDE C  AP KDEL
Sbjct: 169 PVKIFIYDDWSMPHTAAKLKFPYFWDEDCLPAP-KDEL 204

[Close]

BLAST of Carg07226 vs. ExPASy Swiss-Prot
Match: P13689 (Auxin-binding protein 1 OS=Zea mays OX=4577 GN=ABP1 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 9.3e-65
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 7   LVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEVFLV 66
           LVR+IS++PQ +YG  GLSHITVAG+L HG+KEVEVWLQT SPG  TPIHRHSCEEVF V
Sbjct: 46  LVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTV 105

Query: 67  LKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVIISRP 126
           LKG GTL +  SS  KYPG P+E   + N TF IPVND HQ+WN++EHEDLQ+LVIISRP
Sbjct: 106 LKGKGTLLMGSSSL-KYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRP 165

Query: 127 PAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           PAK+F+Y+DW+MPHTAA LKFP+ WDE CFEA  KDEL
Sbjct: 166 PAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEA-AKDEL 201

[Close]

BLAST of Carg07226 vs. ExPASy TrEMBL
Match: A0A6J1GNG5 (auxin-binding protein T85 OS=Cucurbita moschata OX=3662 GN=LOC111456045 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 9.9e-94
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 28  GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 87

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII
Sbjct: 88  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 147

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL
Sbjct: 148 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 188

[Close]

BLAST of Carg07226 vs. ExPASy TrEMBL
Match: A0A6J1JQ76 (auxin-binding protein T85 OS=Cucurbita maxima OX=3661 GN=LOC111488844 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 4.9e-93
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 28  GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 87

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII
Sbjct: 88  FVVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 147

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPPAKVFIY+DWAMPHTAARLKFPYYWDEQCFEAPVKDEL
Sbjct: 148 SRPPAKVFIYDDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 188

[Close]

BLAST of Carg07226 vs. ExPASy TrEMBL
Match: A0A6J1DA75 (auxin-binding protein T85 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018456 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.4e-86
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGS+LHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 28  GLPLVRNISELPQDNYGRGGLSHITVAGSILHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 87

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKGTGTL+LAP SH KYPGTPKEFSIYSN TF IP+NDAHQ+WNTNEHEDLQMLVII
Sbjct: 88  FVVLKGTGTLYLAPESHEKYPGTPKEFSIYSNSTFIIPINDAHQVWNTNEHEDLQMLVII 147

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPPAKVFIY DW+MPHTAARLKFPY WDEQCFE PVKDEL
Sbjct: 148 SRPPAKVFIYNDWSMPHTAARLKFPYSWDEQCFEPPVKDEL 188

[Close]

BLAST of Carg07226 vs. ExPASy TrEMBL
Match: A0A6J1DAY4 (auxin-binding protein T85 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018456 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85
Identity = 147/160 (91.88%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 5   LPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEVF 64
           LPLVRNISELPQDNYGRGGLSHITVAGS+LHGLKEVEVWLQTFSPGSHTPIHRHSCEEVF
Sbjct: 66  LPLVRNISELPQDNYGRGGLSHITVAGSILHGLKEVEVWLQTFSPGSHTPIHRHSCEEVF 125

Query: 65  LVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVIIS 124
           +VLKGTGTL+LAP SH KYPGTPKEFSIYSN TF IP+NDAHQ+WNTNEHEDLQMLVIIS
Sbjct: 126 VVLKGTGTLYLAPESHEKYPGTPKEFSIYSNSTFIIPINDAHQVWNTNEHEDLQMLVIIS 185

Query: 125 RPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           RPPAKVFIY DW+MPHTAARLKFPY WDEQCFE PVKDEL
Sbjct: 186 RPPAKVFIYNDWSMPHTAARLKFPYSWDEQCFEPPVKDEL 225

[Close]

BLAST of Carg07226 vs. ExPASy TrEMBL
Match: A0A5A7UNW3 (Auxin-binding protein T85 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002370 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.4e-84
Identity = 150/162 (92.59%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV
Sbjct: 11  GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 70

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKGTGTL+ APSSH KYPGTPKEF IYSN TF IPVNDAHQ+ NTNEHEDLQMLVII
Sbjct: 71  FVVLKGTGTLYFAPSSHEKYPGTPKEFPIYSNSTFLIPVNDAHQVGNTNEHEDLQMLVII 130

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEA-PVKDEL 165
           SRPPAKVFIY+DW MPHTAARLKFPYYWDEQCFEA PVKDEL
Sbjct: 131 SRPPAKVFIYDDWFMPHTAARLKFPYYWDEQCFEAPPVKDEL 172

[Close]

BLAST of Carg07226 vs. TAIR 10
Match: AT4G02980.1 (endoplasmic reticulum auxin binding protein 1 )

HSP 1 Score: 274.2 bits (700), Expect = 6.6e-74
Identity = 123/161 (76.40%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 4   GLPLVRNISELPQDNYGRGGLSHITVAGSLLHGLKEVEVWLQTFSPGSHTPIHRHSCEEV 63
           GLP+VRNIS+LPQDNYGR GLSH+TVAGS+LHG+KEVE+WLQTF+PGS TPIHRHSCEEV
Sbjct: 40  GLPIVRNISDLPQDNYGRPGLSHMTVAGSVLHGMKEVEIWLQTFAPGSETPIHRHSCEEV 99

Query: 64  FLVLKGTGTLFLAPSSHGKYPGTPKEFSIYSNCTFHIPVNDAHQIWNTNEHEDLQMLVII 123
           F+VLKG+GTL+LA  +HG +PG P EF I++N T HIP+NDAHQ+ NT  HEDLQ+LVII
Sbjct: 100 FVVLKGSGTLYLA-ETHGNFPGKPIEFPIFANSTIHIPINDAHQVKNTG-HEDLQVLVII 159

Query: 124 SRPPAKVFIYEDWAMPHTAARLKFPYYWDEQCFEAPVKDEL 165
           SRPP K+FIYEDW MPHTAARLKFPYYWDEQC +   KDEL
Sbjct: 160 SRPPIKIFIYEDWFMPHTAARLKFPYYWDEQCIQESQKDEL 198

The following BLAST results are available for this feature:

BLAST of Carg07226 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014417.1	1.7e-95	100.00	Auxin-binding protein T85, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022953527.1	2.0e-93	100.00	auxin-binding protein T85 [Cucurbita moschata] >KAG6575883.1 Auxin-binding prote...	[more]
XP_023549483.1	1.0e-92	98.76	auxin-binding protein T85 [Cucurbita pepo subsp. pepo]	[more]
XP_022992557.1	1.0e-92	98.76	auxin-binding protein T85 [Cucurbita maxima]	[more]
XP_022150242.1	7.0e-86	91.93	auxin-binding protein T85 isoform X2 [Momordica charantia]	[more]

BLAST of Carg07226 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P33490	4.8e-77	75.93	Auxin-binding protein T85 OS=Nicotiana tabacum OX=4097 GN=T85 PE=3 SV=1	[more]
P33491	2.0e-75	74.69	Auxin-binding protein T92 OS=Nicotiana tabacum OX=4097 GN=T92 PE=3 SV=1	[more]
P33487	9.3e-73	76.40	Auxin-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=ERABP1 PE=1 SV=1	[more]
P33488	4.9e-66	72.15	Auxin-binding protein 4 OS=Zea mays OX=4577 GN=ABP4 PE=2 SV=1	[more]
P13689	9.3e-65	71.52	Auxin-binding protein 1 OS=Zea mays OX=4577 GN=ABP1 PE=1 SV=1	[more]

BLAST of Carg07226 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNG5	9.9e-94	100.00	auxin-binding protein T85 OS=Cucurbita moschata OX=3662 GN=LOC111456045 PE=4 SV=...	[more]
A0A6J1JQ76	4.9e-93	98.76	auxin-binding protein T85 OS=Cucurbita maxima OX=3661 GN=LOC111488844 PE=4 SV=1	[more]
A0A6J1DA75	3.4e-86	91.93	auxin-binding protein T85 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DAY4	1.7e-85	91.88	auxin-binding protein T85 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5A7UNW3	1.4e-84	92.59	Auxin-binding protein T85 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Carg07226 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02980.1	6.6e-74	76.40	endoplasmic reticulum auxin binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000526	Auxin-binding protein	PRINTS	PR00655	AUXINBINDNGP	coord: 26..46 score: 81.82 coord: 93..108 score: 64.77 coord: 136..155 score: 80.91 coord: 49..73 score: 83.64 coord: 6..25 score: 75.0 coord: 80..93 score: 56.49 coord: 114..136 score: 79.84
IPR000526	Auxin-binding protein	PFAM	PF02041	Auxin_BP	coord: 4..164 e-value: 3.8E-95 score: 316.2
IPR000526	Auxin-binding protein	PANTHER	PTHR37236	AUXIN-BINDING PROTEIN 1	coord: 4..164
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 3..164 e-value: 4.5E-64 score: 216.5
None	No IPR available	PANTHER	PTHR37236:SF1	AUXIN-BINDING PROTEIN 1	coord: 4..164
None	No IPR available	CDD	cd02220	cupin_ABP1	coord: 6..157 e-value: 2.66539E-111 score: 310.886
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 2..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07226-RA	Carg07226-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0051781	positive regulation of cell division
biological_process	GO:0045793	positive regulation of cell size
biological_process	GO:0032877	positive regulation of DNA endoreduplication
biological_process	GO:0009826	unidimensional cell growth
cellular_component	GO:0005788	endoplasmic reticulum lumen
molecular_function	GO:0010011	auxin binding