Carg07224 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07224
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	39S ribosomal protein L46, mitochondrial-like isoform X2
Location	Carg_Chr17: 8402806 .. 8406143 (-)
RNA-Seq Expression	Carg07224
Synteny	Carg07224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGATTCATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGGTGAACACTTTGCCCTTTGTTAGTTTTCTGTGTGAAAAGCACTCCAATGGCAGCTAATGAATGGATGTACAATATTGGTTCAACCTGTTCTTAGAGCTTCGATGCAAGTTCTAGTATTATCTCTCTAAAAAATTTCTTGTATGGTGTGTGAATTGTTATTTCTTTTTCTCTAATCGGTTGTGTGTGATTCTCTGAAGTTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTATGCATTTCAGGAGTTCAAGTAGGTCTTTCGTCTTGTATTTCTTATTACGGTCTCTGTAAACTTAGAAATATTGAAAAATGGGGAGAAATGACGGAAACAGGTGCTGTATCTTGACTTGATTTCCCATCAGAATAGTGAATAACCAGGAATTGGAATTCGAACTACGTGGTTAATGTATTATAGCTATTATATGGTCGCAACTTAAATCAAGCAACATCGGTATGGTGTACTCTCTGTGAAGGCAGTTTGTCTGATATCTCTGCTCTATTGTGATCAGGTTTAGGTGGCAACAGCAATATCGGCGCAGATATCCTGATGAACTTTTAGATAAAGCTAATGCTAGGTATGTGATCTATCATTTCATCTGGCTGTGTCAAGTATAGGATTTTGGATTATGAATTGTTTTCTGTTCTTTCCTTTTGAACTCTTCTAATTCTTCTTAGGTTTCCATTCCATTAAAATAAGATCCTAATTCCTGAATAGTGTTTCCGTGTAAATGCTGCAATAAAATTAGGTCCGCTTAGTGGTTCAACATGATTTGTGAAACTGACGTAATAACTCTGAAGTACTATTGGTAATGTTAAACTTTATGACTTCCTGGAGCCTGCTATGTTGAAGCTTTTTCCTGGTAAATATTAGTGCTTCCTTTAGTAGTGAGTCGAGTATGCCATAGCTTTTAGGTAGTCAAGTTATTATATCTTTGAATCATTTGCTTGGATTATTTAGGTGGAGAAGGACCACCTTTGTGTTTTCTTTATCTTCCCCGAGTTATCTTAGTTCATTTAGTAAACCGGGTGACTGCAGTTACTGGTCACCAATTTCGTATGCCGATATCATAATATATATTTTGACAAGGCAGCCTTAACTCTTAGTGTCATCAATGTCATTTAGCTAATTTCATGGAGCTTATTGCGCAAAGACTGGATAAATTGCAAATATATGTTTTTTCTTTCTTTCGACGATTGTGACTTGAGCTGCTGATGACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCGCCCCGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTATGCAGTCTTTCTTCATAACTTTTTTAGAATTGGTTGATTGAAGGTTTCCTTATCAATCTATGAGCTCTTGTTCTTGTTCATGCTGAATTATCTTCATTGTTTTGACTTACGAGGCTATCCTTGTGTTTCTTCCTTTACTCTTCTAGATCATCTGTTTCCTCTTGTTTCTGTTAGTTGACTACCATAAGTTGTGAGGTTATTCTTTTATAGTTGTGATTATGTAATGCTCTTGATTCATGTACAACGCTTTTATATCCAAGCGTTGCTGCAGTGTCATGCATATCAGGAGGATCCTGCTACTTTTAGGTGCTTTCAACTCATTTACTTTAGTGCTCTTACATCTATAATACCACGGTTCTACTCGATTCATGATGATAAATGCAACTTGTTTTATTCCTGGGGAAACCTCTTTCATTTGGTTCATAAGACAATTTTTGGATATCATGGTATATCGAATAAATGCTGAATTATCATCACCTGGTTACTATATCAGGCCATCGGCGTATTTCTTATTCTAGAATACAGCGTCTCTTGTTTTTTCTCATTGTTGTTTTAGACAGTCTATCTGATCCAAGTCATTAATTTTCCAGATTCTAAGCTCAAAAGAGAGGTTTAAATTCTGCTTACTTGAATTGTCCCCTTTCCTTTTAGGTCACTGCAGAGAGCACTTGACAGAAGACTCTATCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAGCCTGTCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAAGTGAGAATTGGCTGCCAACACTCTTCAGTTCTCTATTTCAACAATTAAACCCTTCTAACTTTCAAGTTCTGCAGTGTGCAGAGTCTGCCTTAGAGTCCGTTCTTGGAGGTCTTTCTCATACATATTTTGTTGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGGTATGTCTTCTATTCAAACTTTTACATCATATAAGAGATTAAAGGCTTCAAGCTTTGACACTTAGAATCGATTAAATACCATGTGGTCTCTGTACTTTAGATTATATACTATTTTAGTCCTTGTACTTTAGATTGTCCAAATTTAGGCTTTATATTTAAGAAGATTTATTGATTGTCCAATTGTCCAAGAACTAAATTTGGACACTTAAAATACATGGACTAAAATAGAATAAAACTCAAAGTACTGAACCAAAATGATATTTACCTTTGGAGTCTAGGCTCGAACATAGTTTAGTACAATGAGGTCATTTACTCCTTTGCTTAAAGGCAATCTCTCCTATTTGCCAGCGATTCTTTTTCAAGTCTCAAGTGATTGCAACCAATAAATTCAATATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAGTTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCTAGTAGACTGACCACATAAGTCCCACATAGACCGTTTTCAATCAACAAATTGATGGTCAGTGTGTAAGTGACTTAGAGGATTGAGTTATAAAATGCTAAATTAATGGTAAGGCCGGAGGCTTTGTTTGTTGCTCTGATGTAAAATGGGCGAATGAGGATACCAATTTGGGATCAGCACTTTTGGCAATTTCCTCTCAGCTGTTTCTTTGATTATTAGATAGCCTGGATTAATGGTTCGATCTCCTTATATTGATTTCGAACAGACAAGAGTAATCTTTCGTATCGTCTTGAAATTTGTCTTGAAATTTTGAATATATCAACTTTTCATTACATTTTTTTGGTGGGACGTGGAACTTTGAATTCTTCATTTCATTGAAAAGATTAAATTAGTATGAAAGGGTACTTATT

mRNA sequence

AGGAGATTCATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTATGCATTTCAGGAGTTCAAGTTTAGGTGGCAACAGCAATATCGGCGCAGATATCCTGATGAACTTTTAGATAAAGCTAATGCTAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCGCCCCGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTATGCAGTCTTTCTTCATAACTTTTTTAGAATTGGTTGATTGAAGGTTTCCTTATCAATCTATGAGCTCTTGTTCTTGTTCATGCTGAATTATCTTCATTGTTTTGACTTACGAGGCTATCCTTGTGTTTCTTCCTTTACTCTTCTAGATCATCTGTTTCCTCTTGTTTCTGTTAGTTGACTACCATAAGTTGTGAGGTTATTCTTTTATAGTTGTGATTATGTAATGCTCTTGATTCATGTACAACGCTTTTATATCCAAGCGTTGCTGCAGTGTCATGCATATCAGGAGGATCCTGCTACTTTTAGGTGCTTTCAACTCATTTACTTTAGTGCTCTTACATCTATAATACCACGGTTCTACTCGATTCATGATGATAAATGCAACTTGTTTTATTCCTGGGGAAACCTCTTTCATTTGGTTCATAAGACAATTTTTGGATATCATGGTATATCGAATAAATGCTGAATTATCATCACCTGGTTACTATATCAGGCCATCGGCGTATTTCTTATTCTAGAATACAGCGTCTCTTGTTTTTTCTCATTGTTGTTTTAGACAGTCTATCTGATCCAAGTCATTAATTTTCCAGATTCTAAGCTCAAAAGAGAGGTTTAAATTCTGCTTACTTGAATTGTCCCCTTTCCTTTTAGGTCACTGCAGAGAGCACTTGACAGAAGACTCTATCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAGCCTGTCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAGAGTCCGTTCTTGGAGGTCTTTCTCATACATATTTTGTTGGCAATGCTCCAATGGCTCATATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGCGATTCTTTTTCAAGTCTCAAGTGATTGCAACCAATAAATTCAATATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAGTTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCTAGTAGACTGACCACATAAGTCCCACATAGACCGTTTTCAATCAACAAATTGATGGTCAGTGTGTAAGTGACTTAGAGGATTGAGTTATAAAATGCTAAATTAATGGTAAGGCCGGAGGCTTTGTTTGTTGCTCTGATGTAAAATGGGCGAATGAGGATACCAATTTGGGATCAGCACTTTTGGCAATTTCCTCTCAGCTGTTTCTTTGATTATTAGATAGCCTGGATTAATGGTTCGATCTCCTTATATTGATTTCGAACAGACAAGAGTAATCTTTCGTATCGTCTTGAAATTTGTCTTGAAATTTTGAATATATCAACTTTTCATTACATTTTTTTGGTGGGACGTGGAACTTTGAATTCTTCATTTCATTGAAAAGATTAAATTAGTATGAAAGGGTACTTATT

Coding sequence (CDS)

ATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTATGCATTTCAGGAGTTCAAGTTTAGGTGGCAACAGCAATATCGGCGCAGATATCCTGATGAACTTTTAGATAAAGCTAATGCTAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCGCCCCGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTATGCAGTCTTTCTTCATAACTTTTTTAGAATTGGTTGA

Protein sequence

MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYAVFLHNFFRIG

Homology

[Close]

BLAST of Carg07224 vs. NCBI nr
Match: KAG7014415.1 (hypothetical protein SDJN02_24592 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.4 bits (568), Expect = 9.6e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
           MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 1   MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60

Query: 61  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYAVFLHNFFRIG 111
           RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYAVFLHNFFRIG
Sbjct: 61  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYAVFLHNFFRIG 110

[Close]

BLAST of Carg07224 vs. NCBI nr
Match: XP_023547487.1 (39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 5.6e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1   MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
           MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 17  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 76

Query: 61  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
           RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 77  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 114

[Close]

BLAST of Carg07224 vs. NCBI nr
Match: XP_023547488.1 (39S ribosomal protein L46, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023547489.1 39S ribosomal protein L46, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 5.6e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
          MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 1  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60

Query: 61 RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
          RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 61 RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 98

[Close]

BLAST of Carg07224 vs. NCBI nr
Match: XP_022992543.1 (39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
          MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 1  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60

Query: 61 RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
          RYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 61 RYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRK 98

[Close]

BLAST of Carg07224 vs. NCBI nr
Match: XP_022954202.1 (39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1   MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
           MQRSFSLASQL KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 17  MQRSFSLASQLVKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 76

Query: 61  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
           RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 77  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 114

[Close]

BLAST of Carg07224 vs. ExPASy TrEMBL
Match: A0A6J1GQF1 (39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456531 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
          MQRSFSLASQL KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 1  MQRSFSLASQLVKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60

Query: 61 RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
          RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 61 RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 98

[Close]

BLAST of Carg07224 vs. ExPASy TrEMBL
Match: A0A6J1JQ58 (39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488836 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1   MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
           MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 17  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 76

Query: 61  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
           RYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 77  RYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRK 114

[Close]

BLAST of Carg07224 vs. ExPASy TrEMBL
Match: A0A6J1JZI9 (39S ribosomal protein L46, mitochondrial-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111488836 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
          MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 1  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60

Query: 61 RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
          RYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 61 RYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRK 98

[Close]

BLAST of Carg07224 vs. ExPASy TrEMBL
Match: A0A6J1JTU9 (54S ribosomal protein L17, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488836 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1   MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
           MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 45  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 104

Query: 61  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
           RYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 105 RYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRK 142

[Close]

BLAST of Carg07224 vs. ExPASy TrEMBL
Match: A0A6J1GQE8 (39S ribosomal protein L46, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456531 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1   MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 60
           MQRSFSLASQL KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR
Sbjct: 17  MQRSFSLASQLVKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRR 76

Query: 61  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 99
           RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Sbjct: 77  RYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK 114

[Close]

BLAST of Carg07224 vs. TAIR 10
Match: AT1G14620.1 (decoy )

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-35
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 11  LAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKA 70
           L  RRGF T+S+KIVASVLFERL VVIPK DP VYAFQEFKF WQQQ+RRRYPDE LD A
Sbjct: 14  LESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIA 73

Query: 71  NARGKGDYQIDYVPAPRITEADKTNDRK 99
             R KG+YQ+DYVPAPRITEADK NDRK
Sbjct: 74  KNRAKGEYQMDYVPAPRITEADKNNDRK 101

[Close]

BLAST of Carg07224 vs. TAIR 10
Match: AT1G14620.2 (decoy )

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-35
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 11  LAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKA 70
           L  RRGF T+S+KIVASVLFERL VVIPK DP VYAFQEFKF WQQQ+RRRYPDE LD A
Sbjct: 14  LESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIA 73

Query: 71  NARGKGDYQIDYVPAPRITEADKTNDRK 99
             R KG+YQ+DYVPAPRITEADK NDRK
Sbjct: 74  KNRAKGEYQMDYVPAPRITEADKNNDRK 101

The following BLAST results are available for this feature:

BLAST of Carg07224 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014415.1	9.6e-55	100.00	hypothetical protein SDJN02_24592 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023547487.1	5.6e-47	100.00	39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_023547488.1	5.6e-47	100.00	39S ribosomal protein L46, mitochondrial-like isoform X2 [Cucurbita pepo subsp. ...	[more]
XP_022992543.1	1.6e-46	98.98	39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita maxima]	[more]
XP_022954202.1	1.6e-46	98.98	39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg07224 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg07224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQF1	7.9e-47	98.98	39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita moschata O...	[more]
A0A6J1JQ58	7.9e-47	98.98	39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1JZI9	7.9e-47	98.98	39S ribosomal protein L46, mitochondrial-like isoform X3 OS=Cucurbita maxima OX=...	[more]
A0A6J1JTU9	7.9e-47	98.98	54S ribosomal protein L17, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1GQE8	7.9e-47	98.98	39S ribosomal protein L46, mitochondrial-like isoform X1 OS=Cucurbita moschata O...	[more]

BLAST of Carg07224 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14620.1	4.0e-35	79.55	decoy	[more]
AT1G14620.2	4.0e-35	79.55	decoy	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040008	39S ribosomal protein L46, mitochondrial	PANTHER	PTHR13124	39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED	coord: 1..98
None	No IPR available	PANTHER	PTHR13124:SF14	SUBFAMILY NOT NAMED	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07224-RA	Carg07224-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome