Carg07211 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07211
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U1 small nuclear ribonucleoprotein C
Location	Carg_Chr17: 8329314 .. 8329933 (-)
RNA-Seq Expression	Carg07211
Synteny	Carg07211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCACTCCAGGCAAACGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCCGCAGCATTCCATCAGGTTGGTGCAGCCTATAATCAGCATTTACTTGGCCAACGACCTCGTCTTCCTGTATTACCTACTCCTGTAATGCCGGGAGCTGCCCCGGGGTTATTGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAACTCCTGGTGCTCCAGGTAATATTCACAGATTTCATACATTGAAATCTTGTTGGGAAGCCTTGGGGTGTTCTCGTCTGTTTTTATTGATTTCGGTTTGTGCTCCTTTGTCATTGTAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGCTCCGCCCGGTGCTCCTATGCCTGGCCAAGTGAATATGCTTGCCAGGCCGCCGCCTCCTCCAGCACCAATTCCAGGGAGCACACCTCAACCTTCTTCAGCCAATGGCGCACCTTCAGCTGCTGCACCATTGATGTATCAAGCAAATCCAGCAGCACCAGGAAGTGGTGGTTATGATAGCTTCACCACCACCGCTCAACCTTCTGAGTCTAACCATTAG

mRNA sequence

ATGAATGCACTCCAGGCAAACGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCCGCAGCATTCCATCAGGTTGGTGCAGCCTATAATCAGCATTTACTTGGCCAACGACCTCGTCTTCCTGTATTACCTACTCCTGTAATGCCGGGAGCTGCCCCGGGGTTATTGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAACTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGCTCCGCCCGGTGCTCCTATGCCTGGCCAAGTGAATATGCTTGCCAGGCCGCCGCCTCCTCCAGCACCAATTCCAGGGAGCACACCTCAACCTTCTTCAGCCAATGGCGCACCTTCAGCTGCTGCACCATTGATGTATCAAGCAAATCCAGCAGCACCAGGAAGTGGTGGTTATGATAGCTTCACCACCACCGCTCAACCTTCTGAGTCTAACCATTAG

Coding sequence (CDS)

ATGAATGCACTCCAGGCAAACGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTTGGTCAAGCCGCAGCATTCCATCAGGTTGGTGCAGCCTATAATCAGCATTTACTTGGCCAACGACCTCGTCTTCCTGTATTACCTACTCCTGTAATGCCGGGAGCTGCCCCGGGGTTATTGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAACTCCTGGTGCTCCAGGATATCTACCTGCTCCTACAATGCCACCTATGATGGCTCCGCCCGGTGCTCCTATGCCTGGCCAAGTGAATATGCTTGCCAGGCCGCCGCCTCCTCCAGCACCAATTCCAGGGAGCACACCTCAACCTTCTTCAGCCAATGGCGCACCTTCAGCTGCTGCACCATTGATGTATCAAGCAAATCCAGCAGCACCAGGAAGTGGTGGTTATGATAGCTTCACCACCACCGCTCAACCTTCTGAGTCTAACCATTAG

Protein sequence

MNALQANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPIPGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH

Homology

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BLAST of Carg07211 vs. NCBI nr
Match: KAG7014402.1 (U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326.2 bits (835), Expect = 1.6e-85
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MNALQANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLP 60
           MNALQANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLP
Sbjct: 1   MNALQANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLP 60

Query: 61  TPVMPGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPP 120
           TPVMPGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPP
Sbjct: 61  TPVMPGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPP 120

Query: 121 PAPIPGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 173
           PAPIPGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH
Sbjct: 121 PAPIPGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 172

[Close]

BLAST of Carg07211 vs. NCBI nr
Match: XP_022953847.1 (U1 small nuclear ribonucleoprotein C-like [Cucurbita moschata] >KAG6575868.1 U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.4 bits (812), Expect = 7.6e-83
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI
Sbjct: 91  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 173
           PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH
Sbjct: 151 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 198

[Close]

BLAST of Carg07211 vs. NCBI nr
Match: XP_023548482.1 (U1 small nuclear ribonucleoprotein C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.5 bits (794), Expect = 9.3e-81
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGLLPGIRPPVLPRPT GAPGYLPAPTMPPMM PPGAPMPGQVNMLARPPPPPAPI
Sbjct: 91  PGAAPGLLPGIRPPVLPRPTHGAPGYLPAPTMPPMMVPPGAPMPGQVNMLARPPPPPAPI 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 173
           PGS PQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH
Sbjct: 151 PGSAPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 198

[Close]

BLAST of Carg07211 vs. NCBI nr
Match: XP_022991731.1 (U1 small nuclear ribonucleoprotein C-like [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 1.6e-80
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLAR PPPPAPI
Sbjct: 91  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARLPPPPAPI 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 173
           PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSF T AQPSESNH
Sbjct: 151 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFNTAAQPSESNH 198

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BLAST of Carg07211 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-71
Identity = 151/168 (89.88%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF QVGAAYNQHLLGQRPRLPVLPTPVM
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLGQRPRLPVLPTPVM 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGL+PGIRPPVLPRP PGAPGYLPAPTMPPMMAPPGAPMPGQVN+ AR PPPPAP+
Sbjct: 91  PGAAPGLMPGIRPPVLPRPVPGAPGYLPAPTMPPMMAPPGAPMPGQVNIPAR-PPPPAPV 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 173
           PGS PQPSS NGAP  A P MYQANPAAPGSGGY+SFTT AQPSE NH
Sbjct: 151 PGSAPQPSSTNGAP-LAPPSMYQANPAAPGSGGYESFTTMAQPSEPNH 196

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BLAST of Carg07211 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.9e-48
Identity = 126/185 (68.11%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLG-----QRPRLPVL 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQ AAF QVGAAYNQHL+       RPRLPVL
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLVSFPGNPPRPRLPVL 90

Query: 65  PTPVMP--GAAP-----GLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAP-MP-GQ 124
           PTP MP  G+AP      L+PG+RPPVLPRP PGAPGY+PAP MP MMAPPGAP MP   
Sbjct: 91  PTPGMPVAGSAPLPMNSPLVPGMRPPVLPRPVPGAPGYMPAPGMPSMMAPPGAPSMPMPP 150

Query: 125 VNMLARPPP---PPAPIPGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQP 173
           +N L RPP    PPA +PGST  P+S  GAPS     MYQANPA P SGG+DSF   AQ 
Sbjct: 151 LNSLPRPPTMNVPPA-VPGSTSTPTS-GGAPSMMTQPMYQANPAGPTSGGFDSFNINAQG 210

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BLAST of Carg07211 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-29
Identity = 106/200 (53.00%), Postives = 120/200 (60.00%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLG-----QRPRLPVL 64
           +ANVR+YYQQFEEQQTQSLIDQRIKEHLGQAAAF Q GA +NQH+L       RPRLP+L
Sbjct: 31  KANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAF-QAGAPFNQHMLAFPGAVARPRLPIL 90

Query: 65  PTPVMPGAAP--GLLPGIRPPVLPRP----TPGAPGYLPAPTMPP-MMAPPGAPMPGQVN 124
           PTP MP   P   L+PG+RPP+LP P     PGAP  +P P  PP  M  PGAP PG + 
Sbjct: 91  PTPGMPHGFPQAPLMPGVRPPILPAPGVPGYPGAPPTMPQPGAPPGSMPQPGAP-PGSMP 150

Query: 125 MLARPP------PPPAPIPGSTPQPSS-ANGAP---SAAAPLMYQANPAAPG---SGGYD 173
               PP        P P P + P P+S   GAP   SAA P +YQANP AP    SG   
Sbjct: 151 QPGAPPGSMPMQMAPLPRPPTLPPPTSGVPGAPIPNSAAPPAIYQANPPAPAGPTSGAPP 210

[Close]

BLAST of Carg07211 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-28
Identity = 108/206 (52.43%), Postives = 121/206 (58.74%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLG-----QRPRLPVL 64
           +ANVR+YYQQFEEQQTQSLIDQRIKEHLGQAAAF Q GA +NQH+L       RPRLP+L
Sbjct: 31  KANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAF-QAGAPFNQHMLTFPGAVARPRLPIL 90

Query: 65  PTPVMPGA---APG--LLPGIRPPVLPRP-------------TPGA-PGYLPAPTMPP-M 124
           PTP MP     APG  L+PG+RPP+LP P              PGA PG +P P  PP  
Sbjct: 91  PTPGMPHGFPQAPGAPLMPGVRPPILPAPGIPGYPGGPPTMLQPGAPPGSMPQPGAPPGS 150

Query: 125 MAPPGAPMPGQVNMLARPPPPPAPIPGSTPQPSSANGAP---SAAAPLMYQANPAAPG-- 173
           M  PGAP PG + M   P P P  +P   P  S   GAP   SAA P +YQ NP AP   
Sbjct: 151 MPQPGAP-PGSMPMQMAPLPRPPTLP---PPTSGVPGAPIPNSAAPPAIYQTNPPAPAGP 210

[Close]

BLAST of Carg07211 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26
Identity = 86/167 (51.50%), Postives = 101/167 (60.48%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVR YYQQFEEQQTQSLIDQRIKEHLGQ   + QVGA +NQH+L  RPR P++   + 
Sbjct: 31  KANVRIYYQQFEEQQTQSLIDQRIKEHLGQTGGYQQVGAVFNQHMLA-RPRPPMM---LP 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PG+ P    G+RPPVLPRP     GY+P P +P MMAPPGAP+P         PP  API
Sbjct: 91  PGSMP---MGMRPPVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRPPGMAPI 150

Query: 125 PGS-------TPQPSSANGAP----SAAAPLMYQANPAAPGSGGYDS 161
           PG         P P    G P        P  Y  NPAAP SG +++
Sbjct: 151 PGQGGGPPGMAPIPGQGGGPPPNYNGLPPPPPYHTNPAAPPSGNFNN 190

[Close]

BLAST of Carg07211 vs. ExPASy TrEMBL
Match: A0A6J1GPE6 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111456262 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.7e-83
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI
Sbjct: 91  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 173
           PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH
Sbjct: 151 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 198

[Close]

BLAST of Carg07211 vs. ExPASy TrEMBL
Match: A0A6J1JRL3 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111488260 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.7e-81
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLAR PPPPAPI
Sbjct: 91  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARLPPPPAPI 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQPSESNH 173
           PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSF T AQPSESNH
Sbjct: 151 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFNTAAQPSESNH 198

[Close]

BLAST of Carg07211 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.8e-69
Identity = 148/169 (87.57%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF QVGAA+NQHLLGQRPRLPVLPTPVM
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLGQRPRLPVLPTPVM 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGL+PGIRPPVLPRP PGAPGYLP PTMPPMMAPPGAP+PGQVN+ +R PPPPAP+
Sbjct: 91  PGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSR-PPPPAPL 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQP-SESNH 173
           PGS PQPSS NGAP  AAP  YQANPAAPGSGGYDSFT+ AQP SESNH
Sbjct: 151 PGSAPQPSSTNGAP-LAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH 197

[Close]

BLAST of Carg07211 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 148/169 (87.57%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF QVGAA+NQHLLGQRPRLPVLPTPV+
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLGQRPRLPVLPTPVI 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGL+PGIRPPVLPRP PGAPGYLP PTMPPMMAPPGAP+PGQVN+ +R PPPPAPI
Sbjct: 91  PGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSR-PPPPAPI 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQP-SESNH 173
           PGS PQPSS NGAP  AAP  YQANPAAPGSGGYDSFT+ AQP SESNH
Sbjct: 151 PGSAPQPSSTNGAP-LAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH 197

[Close]

BLAST of Carg07211 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 148/169 (87.57%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAF QVGAA+NQHLLGQRPRLPVLPTPV+
Sbjct: 31  KANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLGQRPRLPVLPTPVI 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PGAAPGL+PGIRPPVLPRP PGAPGYLP PTMPPMMAPPGAP+PGQVN+ +R PPPPAPI
Sbjct: 91  PGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSR-PPPPAPI 150

Query: 125 PGSTPQPSSANGAPSAAAPLMYQANPAAPGSGGYDSFTTTAQP-SESNH 173
           PGS PQPSS NGAP  AAP  YQANPAAPGSGGYDSFT+ AQP SESNH
Sbjct: 151 PGSAPQPSSTNGAP-LAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH 197

[Close]

BLAST of Carg07211 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 9.8e-28
Identity = 86/167 (51.50%), Postives = 101/167 (60.48%), Query Frame = 0


Query: 5   QANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAYNQHLLGQRPRLPVLPTPVM 64
           +ANVR YYQQFEEQQTQSLIDQRIKEHLGQ   + QVGA +NQH+L  RPR P++   + 
Sbjct: 31  KANVRIYYQQFEEQQTQSLIDQRIKEHLGQTGGYQQVGAVFNQHMLA-RPRPPMM---LP 90

Query: 65  PGAAPGLLPGIRPPVLPRPTPGAPGYLPAPTMPPMMAPPGAPMPGQVNMLARPPPPPAPI 124
           PG+ P    G+RPPVLPRP     GY+P P +P MMAPPGAP+P         PP  API
Sbjct: 91  PGSMP---MGMRPPVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRPPGMAPI 150

Query: 125 PGS-------TPQPSSANGAP----SAAAPLMYQANPAAPGSGGYDS 161
           PG         P P    G P        P  Y  NPAAP SG +++
Sbjct: 151 PGQGGGPPGMAPIPGQGGGPPPNYNGLPPPPPYHTNPAAPPSGNFNN 190

The following BLAST results are available for this feature:

BLAST of Carg07211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014402.1	1.6e-85	100.00	U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022953847.1	7.6e-83	99.40	U1 small nuclear ribonucleoprotein C-like [Cucurbita moschata] >KAG6575868.1 U1 ...	[more]
XP_023548482.1	9.3e-81	97.62	U1 small nuclear ribonucleoprotein C-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991731.1	1.6e-80	97.62	U1 small nuclear ribonucleoprotein C-like [Cucurbita maxima]	[more]
XP_038899936.1	1.8e-71	89.88	U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida]	[more]

BLAST of Carg07211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F6HQ26	4.9e-48	68.11	U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0...	[more]
C5XYW4	6.6e-29	53.00	U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260...	[more]
C5XZK6	2.5e-28	52.43	U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880...	[more]
Q56XE4	1.4e-26	51.50	U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312...	[more]

BLAST of Carg07211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPE6	3.7e-83	99.40	U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114562...	[more]
A0A6J1JRL3	7.7e-81	97.62	U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111488260...	[more]
A0A0A0K515	6.8e-69	87.57	U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ...	[more]
A0A5A7UNW2	1.2e-68	87.57	U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BS92	1.2e-68	87.57	U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=...	[more]

BLAST of Carg07211 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03120.1	9.8e-28	51.50	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 4..34 e-value: 2.5E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..128
None	No IPR available	PANTHER	PTHR31148:SF2	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	coord: 5..157
IPR017340	U1 small nuclear ribonucleoprotein C	PANTHER	PTHR31148	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	coord: 5..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07211-RA	Carg07211-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000395	mRNA 5'-splice site recognition
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0030627	pre-mRNA 5'-splice site binding
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0008270	zinc ion binding