Carg07183 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg07183
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	translocator protein homolog
Location	Carg_Chr17: 8179949 .. 8180500 (-)
RNA-Seq Expression	Carg07183
Synteny	Carg07183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACCGAGCTCAAGCACCGAACAACAGGCGACTCCCCCACCGTCCCCGCCGCCGCCGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTGCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTGGTTTGGTCTGTTTTTCTTACTATCGTGA

mRNA sequence

ATGGCTTCCACCGAGCTCAAGCACCGAACAACAGGCGACTCCCCCACCGTCCCCGCCGCCGCCGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTGCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTGGTTTGGTCTGTTTTTCTTACTATCGTGA

Coding sequence (CDS)

ATGGCTTCCACCGAGCTCAAGCACCGAACAACAGGCGACTCCCCCACCGTCCCCGCCGCCGCCGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTGCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTGGTTTGGTCTGTTTTTCTTACTATCGTGA

Protein sequence

MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFFLLS

Homology

[Close]

BLAST of Carg07183 vs. NCBI nr
Match: KAG7014374.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 358.2 bits (918), Expect = 4.2e-95
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180

Query: 181 LLS 184
           LLS
Sbjct: 181 LLS 183

[Close]

BLAST of Carg07183 vs. NCBI nr
Match: KAG6575839.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.3 bits (869), Expect = 2.0e-89
Identity = 176/181 (97.24%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180

Query: 181 L 182
           L
Sbjct: 181 L 181

[Close]

BLAST of Carg07183 vs. NCBI nr
Match: XP_022953735.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 171/181 (94.48%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPAVP---AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC     F
Sbjct: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 178

Query: 181 L 182
           L
Sbjct: 181 L 178

[Close]

BLAST of Carg07183 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 1.6e-83
Identity = 166/181 (91.71%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPAVP---AAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLL++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYT
Sbjct: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 178

Query: 181 L 182
           L
Sbjct: 181 L 178

[Close]

BLAST of Carg07183 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.8 bits (808), Expect = 2.4e-82
Identity = 165/181 (91.16%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP    AA AADE SAKR KNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSP----AAPAADEASAKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLL+RPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNA+YLYT
Sbjct: 61  LLLSRPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 177

Query: 181 L 182
           L
Sbjct: 181 L 177

[Close]

BLAST of Carg07183 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAA-----AADEVSAKREKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D      A A     +AD+   KR++ +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  +PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PC
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPC 179

[Close]

BLAST of Carg07183 vs. ExPASy TrEMBL
Match: A0A6J1GQH6 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.5e-86
Identity = 171/181 (94.48%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPAVP---AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC     F
Sbjct: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 178

Query: 181 L 182
           L
Sbjct: 181 L 178

[Close]

BLAST of Carg07183 vs. ExPASy TrEMBL
Match: A0A6J1JZC9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.9e-84
Identity = 166/181 (91.71%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPAVP---AAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLL++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYT
Sbjct: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 178

Query: 181 L 182
           L
Sbjct: 181 L 178

[Close]

BLAST of Carg07183 vs. ExPASy TrEMBL
Match: A0A0A0KAU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.0e-59
Identity = 120/175 (68.57%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MAST+LKHR T DS T  +  +A D    K+ KNK IAKRGL+SLA+A+SIP+++TL  I
Sbjct: 1   MASTDLKHRKTDDS-TPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFI 60

Query: 61  LLLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLY 120
           LL +  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF ARPNALYLY
Sbjct: 61  LLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLY 120

Query: 121 TLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
            LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PC
Sbjct: 121 GLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPC 174

[Close]

BLAST of Carg07183 vs. ExPASy TrEMBL
Match: A0A5A7VJL5 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00470 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.7e-57
Identity = 120/176 (68.18%), Postives = 141/176 (80.11%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAAD-EVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLS 60
           MAST+LKHR T DS   P +   AD     K+ +NK IAKRGL+SLA+A+SIP+++TLL 
Sbjct: 1   MASTDLKHRKTDDS--TPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLF 60

Query: 61  ILLLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYL 120
           I L +  KNYYP SA +PFWVPS +VVNWGSL SSLLMG+++WL WAEGGF +RPNALYL
Sbjct: 61  IFLFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYL 120

Query: 121 YTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
           Y LYLVL +AWY LV GAG+R L S+ACLGKTA LVGCDRLFRGVN IAADLV+PC
Sbjct: 121 YGLYLVLSLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPC 174

[Close]

BLAST of Carg07183 vs. ExPASy TrEMBL
Match: A0A6J1DBR2 (translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.0e-47
Identity = 107/181 (59.12%), Postives = 129/181 (71.27%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MAS +LKHR   +S     A A A        K  A A+RGLKSLAVAVS+P++++LL++
Sbjct: 1   MASPDLKHRKPTESDDSATATAPA-------RKPTATARRGLKSLAVAVSVPVSLSLLAV 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
            LL+ P  + PS+ KPFW PSA  VN GS ASSLLMG + WL WA+GGF + PNALYLYT
Sbjct: 61  YLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LY++LC  WYGL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PC     F
Sbjct: 121 LYVLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 174

Query: 181 L 182
           L
Sbjct: 181 L 174

[Close]

BLAST of Carg07183 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 124.8 bits (312), Expect = 7.2e-29
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPTVPAAAA-----AADEVSAKREKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D      A A     +AD+   KR++ +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  +PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PC
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPC 179

The following BLAST results are available for this feature:

BLAST of Carg07183 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014374.1	4.2e-95	100.00	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575839.1	2.0e-89	97.24	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953735.1	1.3e-85	94.48	translocator protein homolog [Cucurbita moschata]	[more]
XP_022992488.1	1.6e-83	91.71	translocator protein homolog [Cucurbita maxima]	[more]
XP_023548365.1	2.4e-82	91.16	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg07183 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	1.0e-27	38.55	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of Carg07183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQH6	6.5e-86	94.48	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 ...	[more]
A0A6J1JZC9	7.9e-84	91.71	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV...	[more]
A0A0A0KAU9	4.0e-59	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1	[more]
A0A5A7VJL5	1.7e-57	68.18	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1DBR2	2.0e-47	59.12	translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3...	[more]

BLAST of Carg07183 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	7.2e-29	38.55	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 40..183 e-value: 6.8E-16 score: 60.2
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 47..178 e-value: 1.0E-13 score: 51.5
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 24..176
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 45..180 e-value: 1.22857E-12 score: 60.2032
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 24..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07183-RA	Carg07183-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane