Carg06747 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06747
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L27A
Location	Carg_Chr18: 998539 .. 998979 (-)
RNA-Seq Expression	Carg06747
Synteny	Carg06747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCGGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAACTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTTCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGAGCGGTTGTCCTTACGGCTTAG

mRNA sequence

ATGACAACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCGGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAACTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTTCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGAGCGGTTGTCCTTACGGCTTAG

Coding sequence (CDS)

ATGACAACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCGGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAACTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTTCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAGAATGGTGGAGCGGTTGTCCTTACGGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPVVVKAKLISKIAEKKIKENGGAVVLTA

Homology

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BLAST of Carg06747 vs. NCBI nr
Match: XP_022994677.1 (60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosomal protein L27a-3-like [Cucurbita pepo subsp. pepo] >KAG6573080.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012266.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. NCBI nr
Match: XP_022955304.1 (60S ribosomal protein L27a-3-like [Cucurbita moschata])

HSP 1 Score: 298.1 bits (762), Expect = 4.1e-77
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

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BLAST of Carg06747 vs. NCBI nr
Match: XP_008438796.1 (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >TYJ99181.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. NCBI nr
Match: XP_022136990.1 (60S ribosomal protein L27a-3-like [Momordica charantia])

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG +PENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVMPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. NCBI nr
Match: XP_038893626.1 (60S ribosomal protein L27a-3 [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 3.4e-76
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKA+KDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKATKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

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BLAST of Carg06747 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-72
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 5.9e-71
Identity = 130/146 (89.04%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-50
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Carg06747 vs. ExPASy Swiss-Prot
Match: P14115 (60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-50
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Carg06747 vs. ExPASy Swiss-Prot
Match: P18445 (60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-50
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Carg06747 vs. ExPASy TrEMBL
Match: A0A6J1JWJ1 (60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 6.8e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. ExPASy TrEMBL
Match: A0A6J1GVV4 (60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PLIDVTQFGYFKVLGKGGLPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLIDVTQFGYFKVLGKGGLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. ExPASy TrEMBL
Match: A0A5A7UL02 (60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003900 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. ExPASy TrEMBL
Match: A0A1S3AXX5 (60S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. ExPASy TrEMBL
Match: A0A6J1C5F8 (60S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG +PENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVMPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. TAIR 10
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 273.5 bits (698), Expect = 1.0e-73
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. TAIR 10
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-72
Identity = 130/146 (89.04%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Carg06747 vs. TAIR 10
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-30
Identity = 79/145 (54.48%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYC IVN+DKLWS+                          VLGKG LPEN+PV
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSM--------------------------VLGKGFLPENKPV 100

Query: 121 VVKAKLISKIAEKKIKENGGAVVLT 146
           VVKAKL+S   EKKIKE G AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

The following BLAST results are available for this feature:

BLAST of Carg06747 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994677.1	1.4e-77	100.00	60S ribosomal protein L27a-3-like [Cucurbita maxima] >XP_023541109.1 60S ribosom...	[more]
XP_022955304.1	4.1e-77	99.32	60S ribosomal protein L27a-3-like [Cucurbita moschata]	[more]
XP_008438796.1	1.5e-76	99.32	PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo] >KAA0055257.1 60S ri...	[more]
XP_022136990.1	2.6e-76	98.63	60S ribosomal protein L27a-3-like [Momordica charantia]	[more]
XP_038893626.1	3.4e-76	98.63	60S ribosomal protein L27a-3 [Benincasa hispida]	[more]

BLAST of Carg06747 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49637	1.4e-72	90.41	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=...	[more]
Q9LR33	5.9e-71	89.04	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=...	[more]
Q56K03	4.4e-50	66.44	60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3	[more]
P14115	4.4e-50	66.44	60S ribosomal protein L27a OS=Mus musculus OX=10090 GN=Rpl27a PE=1 SV=5	[more]
P18445	4.4e-50	66.44	60S ribosomal protein L27a OS=Rattus norvegicus OX=10116 GN=Rpl27a PE=1 SV=3	[more]

BLAST of Carg06747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JWJ1	6.8e-78	100.00	60S ribosomal protein L27a-3-like OS=Cucurbita maxima OX=3661 GN=LOC111490319 PE...	[more]
A0A6J1GVV4	2.0e-77	99.32	60S ribosomal protein L27a-3-like OS=Cucurbita moschata OX=3662 GN=LOC111457307 ...	[more]
A0A5A7UL02	7.5e-77	99.32	60S ribosomal protein L27a-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AXX5	7.5e-77	99.32	60S ribosomal protein L27a-3-like OS=Cucumis melo OX=3656 GN=LOC103483791 PE=3 S...	[more]
A0A6J1C5F8	1.3e-76	98.63	60S ribosomal protein L27a-3-like OS=Momordica charantia OX=3673 GN=LOC111008562...	[more]

BLAST of Carg06747 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70600.1	1.0e-73	90.41	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	4.2e-72	89.04	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	4.0e-30	54.48	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 e-value: 9.3E-20 score: 71.6
None	No IPR available	GENE3D	3.100.10.10		coord: 58..146 e-value: 1.0E-39 score: 136.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146
None	No IPR available	PANTHER	PTHR11721:SF21	60S RIBOSOMAL PROTEIN L27A-3	coord: 1..146
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 1..145 score: 11.695002
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 6..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06747-RA	Carg06747-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome