Carg06670 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06670
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 569418 .. 570094 (-)
RNA-Seq ExpressionCarg06670
SyntenyCarg06670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTGTCTAACATTTGCCGATTCACAAAACGAATCAAGCCTCATGCTATCCTCACTGAGGAGAAGTTTCCGGTTATTACAAAACCCCGTGAGTGTCAAAAGACAGGAAAATCCATTGGACCCGCACCCGCGAATCGTCCACAACCGTACCGCTTAGATGAAATTTACGCGTAATGTCGAAGCAGCTCCACCACCCCTCGAGAGATCCACATCTTCAAGACTAATGATTGTTTTGACTATGAAGGGTTTATGTTCAACTTTAGAATCTCTAGATGTTTGCGAGAGGGCTCGGGGGTTGAAAGGGAACCCGTTTCTTTGCATGTTTACTCGTCCTATACAAAACCAACTGGAACAAAGAAGTAAGCAAAAGCACATGAGTTTATGTGTCAAAGCATTTCAATGGCTAACATGTTGAGTATAATGGTTGCAGGTTGAGGAAACTTCTGGAAGGATGCAGAAATGGACTGGACAAGACATCCAAAGAGATAATAGAGCTGAAAGCTAGAAGAGGATCAGTTGTTCATCACTTTCTTTCATTATCTTCTATGTCTTTCCTTCTTAATTTCATTTTTGACTTTTGACTTTTGACTTTCAGCTAAGTGTTTGAGAAATTTCGATCATTTTGACTTTAATTTCAGCATTAGGTCAACTCGTGATTGAGCTATACTGTCTGT

mRNA sequence

ATGCGATTGTCTAACATTTGCCGATTCACAAAACGAATCAAGCCTCATGCTATCCTCACTGAGGAGAAGTTTCCGGTTATTACAAAACCCCGTGAGTGTCAAAAGACAGGAAAATCCATTGGACCCGCACCCGCGAATCGTCCACAACCGTACCGCTTAGATGAAATTTACGCGTTGAGGAAACTTCTGGAAGGATGCAGAAATGGACTGGACAAGACATCCAAAGAGATAATAGAGCTGAAAGCTAGAAGAGGATCAGTTGTTCATCACTTTCTTTCATTATCTTCTATGTCTTTCCTTCTTAATTTCATTTTTGACTTTTGACTTTTGACTTTCAGCTAAGTGTTTGAGAAATTTCGATCATTTTGACTTTAATTTCAGCATTAGGTCAACTCGTGATTGAGCTATACTGTCTGT

Coding sequence (CDS)

ATGCGATTGTCTAACATTTGCCGATTCACAAAACGAATCAAGCCTCATGCTATCCTCACTGAGGAGAAGTTTCCGGTTATTACAAAACCCCGTGAGTGTCAAAAGACAGGAAAATCCATTGGACCCGCACCCGCGAATCGTCCACAACCGTACCGCTTAGATGAAATTTACGCGTTGAGGAAACTTCTGGAAGGATGCAGAAATGGACTGGACAAGACATCCAAAGAGATAATAGAGCTGAAAGCTAGAAGAGGATCAGTTGTTCATCACTTTCTTTCATTATCTTCTATGTCTTTCCTTCTTAATTTCATTTTTGACTTTTGA

Protein sequence

MRLSNICRFTKRIKPHAILTEEKFPVITKPRECQKTGKSIGPAPANRPQPYRLDEIYALRKLLEGCRNGLDKTSKEIIELKARRGSVVHHFLSLSSMSFLLNFIFDF
Homology
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BLAST of Carg06670 vs. NCBI nr
Match: KAG7012191.1 (hypothetical protein SDJN02_24943, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 5.1e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MRLSNICRFTKRIKPHAILTEEKFPVITKPRECQKTGKSIGPAPANRPQPYRLDEIYALR 60
           MRLSNICRFTKRIKPHAILTEEKFPVITKPRECQKTGKSIGPAPANRPQPYRLDEIYALR
Sbjct: 1   MRLSNICRFTKRIKPHAILTEEKFPVITKPRECQKTGKSIGPAPANRPQPYRLDEIYALR 60

Query: 61  KLLEGCRNGLDKTSKEIIELKARRGSVVHHFLSLSSMSFLLNFIFDF 108
           KLLEGCRNGLDKTSKEIIELKARRGSVVHHFLSLSSMSFLLNFIFDF
Sbjct: 61  KLLEGCRNGLDKTSKEIIELKARRGSVVHHFLSLSSMSFLLNFIFDF 107

The following BLAST results are available for this feature:
BLAST of Carg06670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012191.15.1e-53100.00hypothetical protein SDJN02_24943, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg06670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06670 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06670-RACarg06670-RAmRNA