Carg06418 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06418
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 9597543 .. 9598170 (-)
RNA-Seq ExpressionCarg06418
SyntenyCarg06418
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTTTCCCAAGGTAGGATAAGTGTCCCACTTGGAATCTTGGGCACAAGTCACAAGATCATTATTCTTCTCTTGAATTCAAGCCTACTCAGAGGAACAACTTGTCTTATTCTCAATGGTAATTGAAGGAATGATGGAACGTAATGCCAATTGCTTTACACGTTTTTAATTTAATAATTCGACAGGCAAAAGTGGATGAATGAATCTGAGATACAAGTTTAATTTGTTAACAGCCAAAAGCTCATGAATCCTTCCCATGGCGATGGATATGGACAGCAGATCTGAATTGCAGGGAACTGTTTCTAACGCACAGTTGTCCACAACCCACATTCAGGTCATATTTCCTTACTCTTTTCACAGCTTCCTAATGTAGTCTTGTGTAGATGACAGAGGCAGCCTTGTGCTTGTGTCCTTAATAATTGGCTCCAATGCACCTTTCCTTTTCTCTCCCTACTTTTTCCCTCTTAATATTTTTATAATAAAAGTTCATTTATTTATTTATTTTCACACTTTTTAGTGTGTTGGTGACTTGGTTTTGGCCTATATTTTAGCAGACCATCCGTACTTTCCCTACTGCACTGTAGCTTCTGATAATATCACTTTTGAATTGGACTCATGTGCATTCTAG

mRNA sequence

TCATTTTCCCAAGGTAGGATAAGTGTCCCACTTGGAATCTTGGGCACAAGTCACAAGATCATTATTCTTCTCTTGAATTCAAGCCTACTCAGAGGAACAACTTGTCTTATTCTCAATGGTAATTGAAGGAATGATGGAACCCAAAAGCTCATGAATCCTTCCCATGGCGATGGATATGGACAGCAGATCTGAATTGCAGGGAACTGTTTCTAACGCACAGTTGTCCACAACCCACATTCAGTGTGTTGGTGACTTGGTTTTGGCCTATATTTTAGCAGACCATCCGTACTTTCCCTACTGCACTGTAGCTTCTGATAATATCACTTTTGAATTGGACTCATGTGCATTCTAG

Coding sequence (CDS)

ATGGCGATGGATATGGACAGCAGATCTGAATTGCAGGGAACTGTTTCTAACGCACAGTTGTCCACAACCCACATTCAGTGTGTTGGTGACTTGGTTTTGGCCTATATTTTAGCAGACCATCCGTACTTTCCCTACTGCACTGTAGCTTCTGATAATATCACTTTTGAATTGGACTCATGTGCATTCTAG

Protein sequence

MAMDMDSRSELQGTVSNAQLSTTHIQCVGDLVLAYILADHPYFPYCTVASDNITFELDSCAF
Homology
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BLAST of Carg06418 vs. NCBI nr
Match: KAG7018267.1 (hypothetical protein SDJN02_20135 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MAMDMDSRSELQGTVSNAQLSTTHIQCVGDLVLAYILADHPYFPYCTVASDNITFELDSC 60
          MAMDMDSRSELQGTVSNAQLSTTHIQCVGDLVLAYILADHPYFPYCTVASDNITFELDSC
Sbjct: 1  MAMDMDSRSELQGTVSNAQLSTTHIQCVGDLVLAYILADHPYFPYCTVASDNITFELDSC 60

Query: 61 AF 63
          AF
Sbjct: 61 AF 62

The following BLAST results are available for this feature:
BLAST of Carg06418 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018267.11.1e-26100.00hypothetical protein SDJN02_20135 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg06418 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06418 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06418 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06418-RACarg06418-RAmRNA