Carg06329 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06329
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP synthase subunit delta', mitochondrial-like
Location	Carg_Chr06: 7811603 .. 7814724 (+)
RNA-Seq Expression	Carg06329
Synteny	Carg06329

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCAGCTTCCAAACAGCACCAGCGGAACCCTTTCACTTCTCCTTCTTCATCTCTCTCCGACCTTGCGAGAGCCGAGCGACCCCCACTCCAGTCTCCGCCATGTTCCGACGAGCTTCCACCCTTTTGACCCGGCCTCTTCTCTCTGCAAGGGCTAGATCCTTCTCCGCCGATCTGCCGGCGGCTTCTTCAACTGACGATGCGTTTGTCGCTGCCTGGAAGAAGGCGATCCCCACTATTGATCCTCCTAGAACTCCTCTCTCTTTCATGGCTCCTCGTCCTGCTACGCCGTCTTCCATCCCTACTAAGCTCACTGTCAACTTTGTTCTTCCTTATGCCTCCGAGCTCTCGGCCAAAGAGGTTAGTCTTTCGAATTTTGTTTTGCCTGGTGATTTTTTTTTATTTTGTGTACCAGGCGTTGAATCTTGTGTGTGATTTTCAATTTTTTGATGCATTTGATTTGATTTGATTTTTTTGTGGATTTTTTTTTATATGTTTTTATTGACTCTTGGATTAACCTTCTGTCGGCTAATTTTGATGGAAAATCGTGACTTGTTCATTGTTTCGAACCTTCGTAATTAATACAATCGGATGTTTAGAGAAAAATAATGGACGTAAATTAGCATTTCGTGTCCATGGTTACGAATGCTGGACTCGAAATTGATTTTAAACGAGTGCGGGAAGCTGTTACTTTATTTTTTCCTCTGGATATGAAAGATGAATTCCTTCAATTCATCAGTACGTTTCATAGATTTGATTTTTCTTGTTTTATTTTTTGATCTTTGGCATTCATTTCCTTATACTATCTTTTCACGCTGGAGGAAATTCGACGTTTTCTTTTCATATTCATGGACATGTTGATGATCAGATCAAATTATATAATCTCTGTAAATGTCATGTTCTTTGCTCATGGTCAAGGAGTCTCTAAGTGCTGTTGATATGCAGTATCAAGAACTGCTAAATCTGCGTATCTGTAGCGTAGGCTTGTCGTGTCCAATGCTGTTATATCAGCAAAATCCTGATAAATTAAGGCGGCATTTTCATTCATCTGTTCATATTATCATCAGTTCTTAAAGGGTTTATATTTGTTTCTTAGCTCATCCAGAATCCTATGCCGCAACTGTCCACTTATACCGGTGGCTGTTGTTTTCTATATCCCAGCCCCAGGTCCTTGTGCTTAGTTTAAAGAGGGAAGATCCTCTAATGGGTACTTACTTATTCGATTCTCTTCGGTATGGAAAATTCAAAAGGGGCTACTGGTGAAGAGAACCCTGTTCATTAACGCCTTCTATTCTTCCTTTTTTGGTTTAGAACACATATTAGCAAAAGAACATGTACAAAGAGATGAGGATAAAAGGGAGATCAGATATTACATGCCTCTACTAGTTTGAATAACTAACTATAAAAGAATACAGAGGGAAAGTTTCCTAGGGAGAATTGGCCCACTATTTTTCCCCTTCTTTGTTTTCTTCTTTGTTGGATCGTAACTTAGCGCGAGCAAATCTTCGTTAGAGCGTGCCCAAAATCTGATTCCAAAGCTTTCTTCACACTTGCTTCATAGAAGGACACCTTTCCGTGTTCAGAGAGTCAACTCTGTCCACTCCAATTCCATTTCTATTGGCGAGAGAAAGAGCAGAGCCGCGAACAAATCTATGAAAGACATCAGATTTGTGGGGATTTTAGTAGGATTTATTCTCATGATGTAGAAATCAGAGCAGGTTCAACGATCACTCACGGGCTGGCCTCAAGACAATTCCCGCGAAACTCTTTCCTCTACGCTTCTTGTTCTTCTCTTCGATAAAAAACTCTTTGGAGAGAATTCCCCTTACTCGACTTCCAAGACTACAAACAAAATCATACCGATTTATCCATTTTCCATTTTCCTTAAAGATTCTTTGGGTATATACACATTGCTCAACCTCGAGCTGCTAGAAGTTACTCGAGCTGCTACAGTTAAATAGATAAGTTACTCAGAGCACAGTTAAATAGATAAGAGGCAAAAAAGAAAAGTATGTTGTCTGTAAACTCGAGCTGCTAGAAGTTACTCAGAGTTTATGCTTCCAAGTTTATTATGAACCTAGTGCACCGGTTCGATTTATTCTTCATTTTTCTTCTCTTACTGATGAGAGGCTATTTCAAATTCACTTCAATTGTTCTGTTTTGGGCTCATGAACACTCTTTATCACAGACGTTGCTATGATTAAGGATACAAATTCGCAATGGAACCCAAAGTTTTGAGTCAGATTATTCATTGCTCTTCTTTAAAAGTCTTTGTTCTTCCCCCCCATTCCGAACAGGTTGACATGGTGATAATTCCAGCCACAACTGGGCAAATGGGTGTTCTTCCCGGCCATGTAGCTACAATCGCAGAGTTGAAGCCAGGAGTTCTATCAGTGCACGAAGGGAGCGACACCAAAAAGTACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCGTACGCTGACATAATCGCCGTGGAAGCTGTGCCTGTAGACCAAATCGACCCCGACCAAGTACAGAAGGGTCTTGCCGAATTCACCCAGAAGTTGAACTCTGCCTCAACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGACGTGCACAGTGCCCTGAACGCTGCCCTTACAGGATAGTTTCCTCGACTCGCAAATCGGCCACCTTTCTGTTTATCTATTTCCAATTGTACGTTCCTTCATAACACTGCCTCATTGTGACAGTTCCAAGTTAGCCTTCCTCGGTCGAAATACCTACTGGGAAACACATCATCTTGGGCTTACCCTTTCTGTGTTGAATTTCAAGTCATTCACAAATAAATATATTAGGGATGGATTTTTGCTTGGCCTTATTGGTCATAATCTGGTGGCTTTAGACCTCATAAACATTGAAGAATTCTCATTTGAATCTGTATGGATATGATTTAATTCATCTTGCATTTGGTAACAATTTCACAAATATAGCTAAATATGGGCCAAATGGGCTTCTTCCTCTTGGGCTTTCCCCGGGCCCACTCACTATGAACTCGGAACTGGGCTTCACGTCCATTGGGCCACTCGGGCCCATCAATTCACAGACAAAATTGTTTTCAGTCACGTGATTATAAATGAAACCCGACC

mRNA sequence

TTTCTCAGCTTCCAAACAGCACCAGCGGAACCCTTTCACTTCTCCTTCTTCATCTCTCTCCGACCTTGCGAGAGCCGAGCGACCCCCACTCCAGTCTCCGCCATGTTCCGACGAGCTTCCACCCTTTTGACCCGGCCTCTTCTCTCTGCAAGGGCTAGATCCTTCTCCGCCGATCTGCCGGCGGCTTCTTCAACTGACGATGCGTTTGTCGCTGCCTGGAAGAAGGCGATCCCCACTATTGATCCTCCTAGAACTCCTCTCTCTTTCATGGCTCCTCGTCCTGCTACGCCGTCTTCCATCCCTACTAAGCTCACTGTCAACTTTGTTCTTCCTTATGCCTCCGAGCTCTCGGCCAAAGAGGTTGACATGGTGATAATTCCAGCCACAACTGGGCAAATGGGTGTTCTTCCCGGCCATGTAGCTACAATCGCAGAGTTGAAGCCAGGAGTTCTATCAGTGCACGAAGGGAGCGACACCAAAAAGTACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCGTACGCTGACATAATCGCCGTGGAAGCTGTGCCTGTAGACCAAATCGACCCCGACCAAGTACAGAAGGGTCTTGCCGAATTCACCCAGAAGTTGAACTCTGCCTCAACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGACGTGCACAGTGCCCTGAACGCTGCCCTTACAGGATAGTTTCCTCGACTCGCAAATCGGCCACCTTTCTGTTTATCTATTTCCAATTGTACGTTCCTTCATAACACTGCCTCATTGTGACAGTTCCAAGTTAGCCTTCCTCGGTCGAAATACCTACTGGGAAACACATCATCTTGGGCTTACCCTTTCTGTGTTGAATTTCAAGTCATTCACAAATAAATATATTAGGGATGGATTTTTGCTTGGCCTTATTGGTCATAATCTGGTGGCTTTAGACCTCATAAACATTGAAGAATTCTCATTTGAATCTGTATGGATATGATTTAATTCATCTTGCATTTGGTAACAATTTCACAAATATAGCTAAATATGGGCCAAATGGGCTTCTTCCTCTTGGGCTTTCCCCGGGCCCACTCACTATGAACTCGGAACTGGGCTTCACGTCCATTGGGCCACTCGGGCCCATCAATTCACAGACAAAATTGTTTTCAGTCACGTGATTATAAATGAAACCCGACC

Coding sequence (CDS)

TTTCTCAGCTTCCAAACAGCACCAGCGGAACCCTTTCACTTCTCCTTCTTCATCTCTCTCCGACCTTGCGAGAGCCGAGCGACCCCCACTCCAGTCTCCGCCATGTTCCGACGAGCTTCCACCCTTTTGACCCGGCCTCTTCTCTCTGCAAGGGCTAGATCCTTCTCCGCCGATCTGCCGGCGGCTTCTTCAACTGACGATGCGTTTGTCGCTGCCTGGAAGAAGGCGATCCCCACTATTGATCCTCCTAGAACTCCTCTCTCTTTCATGGCTCCTCGTCCTGCTACGCCGTCTTCCATCCCTACTAAGCTCACTGTCAACTTTGTTCTTCCTTATGCCTCCGAGCTCTCGGCCAAAGAGGTTGACATGGTGATAATTCCAGCCACAACTGGGCAAATGGGTGTTCTTCCCGGCCATGTAGCTACAATCGCAGAGTTGAAGCCAGGAGTTCTATCAGTGCACGAAGGGAGCGACACCAAAAAGTACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCGTACGCTGACATAATCGCCGTGGAAGCTGTGCCTGTAGACCAAATCGACCCCGACCAAGTACAGAAGGGTCTTGCCGAATTCACCCAGAAGTTGAACTCTGCCTCAACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGACGTGCACAGTGCCCTGAACGCTGCCCTTACAGGATAG

Protein sequence

FLSFQTAPAEPFHFSFFISLRPCESRATPTPVSAMFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRPATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG

Homology

[Close]

BLAST of Carg06329 vs. NCBI nr
Match: KAG7028721.1 (hypothetical protein SDJN02_09902, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   FLSFQTAPAEPFHFSFFISLRPCESRATPTPVSAMFRRASTLLTRPLLSARARSFSADLP 60
           FLSFQTAPAEPFHFSFFISLRPCESRATPTPVSAMFRRASTLLTRPLLSARARSFSADLP
Sbjct: 1   FLSFQTAPAEPFHFSFFISLRPCESRATPTPVSAMFRRASTLLTRPLLSARARSFSADLP 60

Query: 61  AASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRPATPSSIPTKLTVNFVLPYASELSAKE 120
           AASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRPATPSSIPTKLTVNFVLPYASELSAKE
Sbjct: 61  AASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRPATPSSIPTKLTVNFVLPYASELSAKE 120

Query: 121 VDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADII 180
           VDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADII
Sbjct: 121 VDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADII 180

Query: 181 AVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 235
           AVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG
Sbjct: 181 AVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 234

[Close]

BLAST of Carg06329 vs. NCBI nr
Match: KAG6597252.1 (hypothetical protein SDJN03_10432, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.0 bits (972), Expect = 2.9e-101
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP
Sbjct: 1   MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. NCBI nr
Match: XP_022974765.1 (ATP synthase subunit delta', mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 377.9 bits (969), Expect = 6.5e-101
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPP+TPLSFMAPRP
Sbjct: 1   MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPKTPLSFMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. NCBI nr
Match: XP_022936123.1 (ATP synthase subunit delta', mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 376.7 bits (966), Expect = 1.4e-100
Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPL FMAPRP
Sbjct: 1   MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLFFMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. NCBI nr
Match: XP_022975239.1 (ATP synthase subunit delta', mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022975240.1 ATP synthase subunit delta', mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 376.7 bits (966), Expect = 1.4e-100
Identity = 198/200 (99.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRASTLLTRPLL+ARARSFSADLPAASSTDDAFVAAWKKAIPTIDPP+TPLSFMAPRP
Sbjct: 1   MFRRASTLLTRPLLTARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPKTPLSFMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. ExPASy Swiss-Prot
Match: Q40089 (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.7e-81
Identity = 155/200 (77.50%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFR +S LL R       R FS DLPA ++ D  FV AWKK IP +DPP+TP ++MAPRP
Sbjct: 1   MFRHSSRLLARATTMGWRRPFSTDLPAETAADSTFVEAWKKLIPNVDPPKTPSAYMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIP+KLTVNFVLPY+SEL+ KEVDMVIIPATTGQMGVLPGHVATIAELKPGV+SVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EG+D  KYFVS GFAFIH NS+ADIIAVEAVP+D+ID + VQKGLAEFTQKLN+ASTD+E
Sbjct: 121 EGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. ExPASy Swiss-Prot
Match: Q96252 (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.5e-76
Identity = 149/205 (72.68%), Postives = 174/205 (84.88%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARA-----RSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSF 94
           MF++AS LL+R + +A +     R+FS +LP  S+ D  FV AWKK  P +DPP+TP +F
Sbjct: 1   MFKQASRLLSRSVAAASSKSVTTRAFSTELP--STLDSTFVEAWKKVAPNMDPPQTPSAF 60

Query: 95  MAPRPATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPG 154
           M PRP+TPSSIPTKLTVNFVLPY SEL+ KEVDMVIIPA+TGQMGVLPGHV TIAELKPG
Sbjct: 61  MKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPG 120

Query: 155 VLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSA 214
           ++SVHEG+D KKYF+SSGFAF+H NS ADIIAVEAVP+D IDP QVQKGLAEF QKL SA
Sbjct: 121 IMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASA 180

Query: 215 STDLEKAEAQIGVDVHSALNAALTG 235
           +TDLEKAEAQIGV+VHSA+NAAL+G
Sbjct: 181 TTDLEKAEAQIGVEVHSAINAALSG 203

[Close]

BLAST of Carg06329 vs. ExPASy Swiss-Prot
Match: Q41000 (ATP synthase subunit delta', mitochondrial OS=Pisum sativum OX=3888 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.6e-71
Identity = 146/201 (72.64%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 35  MFRRA-STLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPR 94
           MFRRA ST L+R   ++  R FS D+ A  +T+ +FV AW+K  P IDPP+TPL F+  R
Sbjct: 1   MFRRATSTFLSR---ASATRRFSTDV-ATPATNSSFVEAWRKVSPNIDPPKTPLEFLKTR 60

Query: 95  PATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSV 154
           P  PS+IPTKLTVNFVLPY+S+L+AKEVD VIIPATTG+MGVLPGHVATIAELKPGVL+V
Sbjct: 61  PPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTV 120

Query: 155 HEGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDL 214
            EG+DT KYFVSSGF FIH NS ADIIAVEAVPV+Q+D D VQKGL EFTQKLNSA+TDL
Sbjct: 121 QEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDL 180

Query: 215 EKAEAQIGVDVHSALNAALTG 235
           EK EAQIG+DV SALN+ALTG
Sbjct: 181 EKREAQIGIDVDSALNSALTG 197

[Close]

BLAST of Carg06329 vs. ExPASy Swiss-Prot
Match: Q55F42 (ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=atp5f1d PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.5e-20
Identity = 50/126 (39.68%), Postives = 78/126 (61.90%), Query Frame = 0


Query: 104 LTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSV-HEGSDTKKY 163
           LT + + P+ +    K+  +V +P   G  GV   HV  IAELKPGV+ + HE  D +K+
Sbjct: 37  LTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKF 96

Query: 164 FVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGV 223
           F+S GFAF++ ++   I  +EAVP+DQ+D ++V+ GLA +TQ  N A  +  KA A IG+
Sbjct: 97  FISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGL 156

Query: 224 DVHSAL 229
           + +  +
Sbjct: 157 ETYQQM 162

[Close]

BLAST of Carg06329 vs. ExPASy Swiss-Prot
Match: P78700 (ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=ATP16 PE=3 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.8e-19
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 104 LTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYF 163
           L + F LP+ +  S   V  V +PA +GQ+G+L  HV T+ +L PGV+ V EGS +KK+F
Sbjct: 31  LKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFF 90

Query: 164 VSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVD 223
           VS GFA +  +S   I +VEA P++   P+ V+  LAE  QK  S++ ++  AEA I ++
Sbjct: 91  VSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAE-AQKNVSSADEVAAAEAAIQLE 150

Query: 224 VHSALNAAL 233
           V  AL AAL
Sbjct: 151 VLEALQAAL 158

[Close]

BLAST of Carg06329 vs. ExPASy TrEMBL
Match: A0A6J1IET0 (ATP synthase subunit delta', mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111473489 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.1e-101
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPP+TPLSFMAPRP
Sbjct: 1   MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPKTPLSFMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. ExPASy TrEMBL
Match: A0A6J1IG70 (ATP synthase subunit delta', mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474353 PE=3 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.0e-101
Identity = 198/200 (99.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRASTLLTRPLL+ARARSFSADLPAASSTDDAFVAAWKKAIPTIDPP+TPLSFMAPRP
Sbjct: 1   MFRRASTLLTRPLLTARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPKTPLSFMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. ExPASy TrEMBL
Match: A0A6J1FCD5 (ATP synthase subunit delta', mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111442814 PE=3 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.0e-101
Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPL FMAPRP
Sbjct: 1   MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLFFMAPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIGVDVHSALNAALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Carg06329 vs. ExPASy TrEMBL
Match: A0A6J1E9L4 (ATP synthase subunit delta', mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111432026 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 9.2e-93
Identity = 183/200 (91.50%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRAS+LL R   SAR RSFSADLPAASSTDDAFVAAWKK IP IDPP+TPLSFM+PRP
Sbjct: 1   MFRRASSLLARSHFSARTRSFSADLPAASSTDDAFVAAWKKMIPNIDPPKTPLSFMSPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIP+KLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EG+DTKKYFVSSGFAFIHGNSYADIIAVEAVPV+QID  QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGNDTKKYFVSSGFAFIHGNSYADIIAVEAVPVEQIDTSQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIG+DVHSALNAA+TG
Sbjct: 181 KAEAQIGIDVHSALNAAITG 200

[Close]

BLAST of Carg06329 vs. ExPASy TrEMBL
Match: A0A6J1ITJ7 (ATP synthase subunit delta', mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479794 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.6e-92
Identity = 182/200 (91.00%), Postives = 190/200 (95.00%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSFMAPRP 94
           MFRRAS+LL R L SAR RSFSADLPAA STDDAFVAAWKK IP IDPP+TPLSFM+PRP
Sbjct: 1   MFRRASSLLARSLFSARTRSFSADLPAAPSTDDAFVAAWKKMIPNIDPPKTPLSFMSPRP 60

Query: 95  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 154
           ATPSSIP+KLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 155 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 214
           EG+DTKKYFVSSGF FIHGNSYADIIAVEAVPV+QID  QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGNDTKKYFVSSGFTFIHGNSYADIIAVEAVPVEQIDASQVQKGLAEFTQKLNSASTDLE 180

Query: 215 KAEAQIGVDVHSALNAALTG 235
           KAEAQIG+DVHSALNAA+TG
Sbjct: 181 KAEAQIGIDVHSALNAAITG 200

[Close]

BLAST of Carg06329 vs. TAIR 10
Match: AT5G47030.1 (ATPase, F1 complex, delta/epsilon subunit )

HSP 1 Score: 285.0 bits (728), Expect = 5.3e-77
Identity = 149/205 (72.68%), Postives = 174/205 (84.88%), Query Frame = 0


Query: 35  MFRRASTLLTRPLLSARA-----RSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLSF 94
           MF++AS LL+R + +A +     R+FS +LP  S+ D  FV AWKK  P +DPP+TP +F
Sbjct: 1   MFKQASRLLSRSVAAASSKSVTTRAFSTELP--STLDSTFVEAWKKVAPNMDPPQTPSAF 60

Query: 95  MAPRPATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPG 154
           M PRP+TPSSIPTKLTVNFVLPY SEL+ KEVDMVIIPA+TGQMGVLPGHV TIAELKPG
Sbjct: 61  MKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPG 120

Query: 155 VLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSA 214
           ++SVHEG+D KKYF+SSGFAF+H NS ADIIAVEAVP+D IDP QVQKGLAEF QKL SA
Sbjct: 121 IMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASA 180

Query: 215 STDLEKAEAQIGVDVHSALNAALTG 235
           +TDLEKAEAQIGV+VHSA+NAAL+G
Sbjct: 181 TTDLEKAEAQIGVEVHSAINAALSG 203

The following BLAST results are available for this feature:

BLAST of Carg06329 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028721.1	1.1e-121	100.00	hypothetical protein SDJN02_09902, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6597252.1	2.9e-101	100.00	hypothetical protein SDJN03_10432, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022974765.1	6.5e-101	99.50	ATP synthase subunit delta', mitochondrial-like [Cucurbita maxima]	[more]
XP_022936123.1	1.4e-100	99.50	ATP synthase subunit delta', mitochondrial-like [Cucurbita moschata]	[more]
XP_022975239.1	1.4e-100	99.00	ATP synthase subunit delta', mitochondrial-like isoform X1 [Cucurbita maxima] >X...	[more]

BLAST of Carg06329 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40089	7.7e-81	77.50	ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=1	[more]
Q96252	7.5e-76	72.68	ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q41000	5.6e-71	72.64	ATP synthase subunit delta', mitochondrial OS=Pisum sativum OX=3888 PE=3 SV=1	[more]
Q55F42	4.5e-20	39.68	ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum OX=44689 G...	[more]
P78700	3.8e-19	43.41	ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8...	[more]

BLAST of Carg06329 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IET0	3.1e-101	99.50	ATP synthase subunit delta', mitochondrial-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IG70	7.0e-101	99.00	ATP synthase subunit delta', mitochondrial-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1FCD5	7.0e-101	99.50	ATP synthase subunit delta', mitochondrial-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E9L4	9.2e-93	91.50	ATP synthase subunit delta', mitochondrial-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ITJ7	1.6e-92	91.00	ATP synthase subunit delta', mitochondrial-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Carg06329 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47030.1	5.3e-77	72.68	ATPase, F1 complex, delta/epsilon subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 199..219
None	No IPR available	GENE3D	1.20.5.440		coord: 191..233 e-value: 2.8E-8 score: 35.5
None	No IPR available	PANTHER	PTHR13822:SF20	ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL	coord: 35..234
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	TIGRFAM	TIGR01216	TIGR01216	coord: 116..220 e-value: 7.9E-20 score: 69.2
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 35..234
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	HAMAP	MF_00530	ATP_synth_epsil_bac	coord: 102..222 score: 14.960195
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	CDD	cd12152	F1-ATPase_delta	coord: 104..227 e-value: 5.92314E-37 score: 124.161
IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	PFAM	PF02823	ATP-synt_DE_N	coord: 104..175 e-value: 1.5E-16 score: 60.1
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	GENE3D	2.60.15.10		coord: 92..190 e-value: 4.1E-26 score: 92.9
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	SUPERFAMILY	51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain	coord: 104..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06329-RA	Carg06329-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism