Carg06327 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06327
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpentatricopeptide repeat-containing protein At1g05670, mitochondrial-like
LocationCarg_Chr06: 7819996 .. 7820878 (+)
RNA-Seq ExpressionCarg06327
SyntenyCarg06327
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGCCCAAAGTTCAACTGCTCAGGCCCATTTCGAAATATCGTCTTCCAGTTCTTGCTGACCGTACATGGTTCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCCTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCGCTTTGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTGTGGTACATTACTACATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTTTCCCCAAGTTTTTAAACGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAATCTTGCTTTTGATTTCGTAGTTCAATTTTTGCCTTCCAACGATGGTACTTTGAGATTCATCTCTGTTAGTTCAGTGACTATTGATGACTGGCGTAGGGTCACTATTAGGTTATCCAAAGCGATTAAGCTGTATAGGATTTGAAGATACTTTTGAGAAATTTATACCCTGTTTTTTTCGGTCAAGATTATGAAATTGTTTGAATGTTGAGGAACCGCGTTTGCGTTCTTTAAGCTGGCATTTAAGGATGACTGTGAAGGAACTGTTAGGTCTTGTTGTGTGGTGTTGTAGGGAAGTGGTTCGAAAGGGACCTCTCCCTCATAATTATATGTTTAACATAATGATTCTTGGGTTTTGTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTGGCATAATACTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCACAAATGGCTGTAAATCTAGTATTGCTACTATCAGTTCCGTCATTGATGCCTTCTGCATGGGCTGGTAG

mRNA sequence

ATGGTCGGCCCAAAGTTCAACTGCTCAGGCCCATTTCGAAATATCGTCTTCCAGTTCTTGCTGACCGTACATGGTTCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCCTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCGCTTTGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTGTGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTGGCATAATACTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCACAAATGGCTGTAAATCTAGTATTGCTACTATCAGTTCCGTCATTGATGCCTTCTGCATGGGCTGGTAG

Coding sequence (CDS)

ATGGTCGGCCCAAAGTTCAACTGCTCAGGCCCATTTCGAAATATCGTCTTCCAGTTCTTGCTGACCGTACATGGTTCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCCTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCGCTTTGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTGTGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTGGCATAATACTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCACAAATGGCTGTAAATCTAGTATTGCTACTATCAGTTCCGTCATTGATGCCTTCTGCATGGGCTGGTAG

Protein sequence

MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDAFCMGW
Homology
[Close]
BLAST of Carg06327 vs. NCBI nr
Match: KAG7028723.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.2 bits (770), Expect = 4.6e-78
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAAL 60
           MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAAL
Sbjct: 1   MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAAL 60

Query: 61  PYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITN 120
           PYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITN
Sbjct: 61  PYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITN 120

Query: 121 GCKSSIATISSVIDAFCMGW 141
           GCKSSIATISSVIDAFCMGW
Sbjct: 121 GCKSSIATISSVIDAFCMGW 140

[Close]
BLAST of Carg06327 vs. NCBI nr
Match: KAG6597254.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 294.3 bits (752), Expect = 5.6e-76
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0 

Query: 1   MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAAL 60
           MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAAL
Sbjct: 1   MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAAL 60

Query: 61  PYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITN 120
           PYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITN
Sbjct: 61  PYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITN 120

Query: 121 GCKSSIATISSVIDAFCMG 140
           GCKSSIATISSVIDAFC G
Sbjct: 121 GCKSSIATISSVIDAFCRG 139

[Close]
BLAST of Carg06327 vs. NCBI nr
Match: XP_022974740.1 (pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 214.9 bits (546), Expect = 4.3e-52
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 26  SLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPTELFCERLEHVTSKF 85
           SLSQFFPASVTR PPRNLRST GLNVSEK F+AALPYNVCQCASPTE+F ERLEHVTSKF
Sbjct: 3   SLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYERLEHVTSKF 62

Query: 86  SCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDAFCMG 140
           SCEPDVY HN+VINANCLKGQSSQALHWVNLMI NGCKSSIATISSVIDAFC G
Sbjct: 63  SCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDAFCRG 116

[Close]
BLAST of Carg06327 vs. NCBI nr
Match: KAG6582510.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 62/126 (49.21%), Postives = 73/126 (57.94%), Query Frame = 0 

Query: 14  NIVFQFLLTV--HGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPT 73
           +I+F+ LL    +G++ + F   V + P  N    Y LNV    F          C    
Sbjct: 226 SILFRLLLRAGDYGAVWKLFRDVVRKGPRPN---NYMLNVMILEF----------CRKGW 285

Query: 74  ELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISS 133
            +  E L HV  KF CEPDVY +N VINA CL+GQSS ALHWVNLMI NGCK SIAT S 
Sbjct: 286 SVIGEGLLHVMRKFRCEPDVYSYNIVINATCLRGQSSDALHWVNLMIANGCKPSIATFSI 338

Query: 134 VIDAFC 138
           VIDAFC
Sbjct: 346 VIDAFC 338

[Close]
BLAST of Carg06327 vs. NCBI nr
Match: XP_022980209.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >XP_022980210.1 pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima])

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-18
Identity = 61/126 (48.41%), Postives = 72/126 (57.14%), Query Frame = 0 

Query: 14  NIVFQFLLTV--HGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPT 73
           +I+F+ LL    +G++ + F   V + P  N    Y  NV    F          C    
Sbjct: 226 SILFRLLLRAGDYGAVWKLFGDVVRKGPCPN---NYMFNVMILEF----------CRKGW 285

Query: 74  ELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISS 133
            +  E L HV  KF CEPDVY +N VINA CL+GQSS ALHWVNLMI NGCK SIAT S 
Sbjct: 286 SVIGEGLLHVMRKFRCEPDVYSYNIVINATCLRGQSSDALHWVNLMIANGCKPSIATFSI 338

Query: 134 VIDAFC 138
           VIDAFC
Sbjct: 346 VIDAFC 338

[Close]
BLAST of Carg06327 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-05
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 76  ERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDA 135
           E  E + SK  CEPD + +N +I++ C KG+  +AL+ +  M  +GC  S+ T +++ID 
Sbjct: 421 ELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 480

Query: 136 FC 138
           FC
Sbjct: 481 FC 481

[Close]
BLAST of Carg06327 vs. ExPASy Swiss-Prot
Match: Q9SI78 (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX=3702 GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.1e-05
Identity = 18/50 (36.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 88  EPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDAFC 138
           +PDV+ +N++IN  C+ G+  +A   ++LM+T GC   + T +++I+ FC
Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFC 325

[Close]
BLAST of Carg06327 vs. ExPASy Swiss-Prot
Match: Q9LQ16 (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX=3702 GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.6e-04
Identity = 20/62 (32.26%), Postives = 36/62 (58.06%), Query Frame = 0 

Query: 76  ERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDA 135
           E+L     K S +PD++ ++++IN  C+  +  +A H   LMI+  C  ++ T S++I  
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKG 407

Query: 136 FC 138
           FC
Sbjct: 408 FC 409

[Close]
BLAST of Carg06327 vs. ExPASy Swiss-Prot
Match: Q9SH26 (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX=3702 GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.0e-04
Identity = 19/62 (30.65%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 76  ERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDA 135
           E+L     K S +PD++ ++++IN  C+  +  +A H   LMI+  C  ++ T +++I+ 
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409

Query: 136 FC 138
           FC
Sbjct: 410 FC 411

[Close]
BLAST of Carg06327 vs. ExPASy TrEMBL
Match: A0A6J1IER3 (pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111473475 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.1e-52
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 26  SLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPTELFCERLEHVTSKF 85
           SLSQFFPASVTR PPRNLRST GLNVSEK F+AALPYNVCQCASPTE+F ERLEHVTSKF
Sbjct: 3   SLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYERLEHVTSKF 62

Query: 86  SCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDAFCMG 140
           SCEPDVY HN+VINANCLKGQSSQALHWVNLMI NGCKSSIATISSVIDAFC G
Sbjct: 63  SCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDAFCRG 116

[Close]
BLAST of Carg06327 vs. ExPASy TrEMBL
Match: A0A6J1IVM8 (pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita maxima OX=3661 GN=LOC111479659 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 61/126 (48.41%), Postives = 72/126 (57.14%), Query Frame = 0 

Query: 14  NIVFQFLLTV--HGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPT 73
           +I+F+ LL    +G++ + F   V + P  N    Y  NV    F          C    
Sbjct: 226 SILFRLLLRAGDYGAVWKLFGDVVRKGPCPN---NYMFNVMILEF----------CRKGW 285

Query: 74  ELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISS 133
            +  E L HV  KF CEPDVY +N VINA CL+GQSS ALHWVNLMI NGCK SIAT S 
Sbjct: 286 SVIGEGLLHVMRKFRCEPDVYSYNIVINATCLRGQSSDALHWVNLMIANGCKPSIATFSI 338

Query: 134 VIDAFC 138
           VIDAFC
Sbjct: 346 VIDAFC 338

[Close]
BLAST of Carg06327 vs. ExPASy TrEMBL
Match: A0A6J1E9F2 (pentatricopeptide repeat-containing protein At5g39710-like OS=Cucurbita moschata OX=3662 GN=LOC111431987 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-18
Identity = 60/126 (47.62%), Postives = 72/126 (57.14%), Query Frame = 0 

Query: 14  NIVFQFLLTV--HGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPT 73
           +I+F+ LL    +G++ + F   V + P  N    Y  NV    F          C    
Sbjct: 226 SILFRLLLRAGDYGAIWKLFRDVVRKGPRPN---NYMFNVMILEF----------CRKGW 285

Query: 74  ELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISS 133
            +  E L HV  KF CEPDVY +N VINA CL+GQSS ALHWVN+MI NGCK SIAT S 
Sbjct: 286 SVIGEGLLHVMRKFRCEPDVYSYNIVINATCLRGQSSDALHWVNMMIENGCKPSIATFSI 338

Query: 134 VIDAFC 138
           VIDAFC
Sbjct: 346 VIDAFC 338

[Close]
BLAST of Carg06327 vs. ExPASy TrEMBL
Match: A0A6J1D0U7 (pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charantia OX=3673 GN=LOC111016014 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-18
Identity = 59/126 (46.83%), Postives = 72/126 (57.14%), Query Frame = 0 

Query: 14  NIVFQFLLTV--HGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPT 73
           +I+F  LL V  +G++ + F   V + P  N    Y  NV  + F          C    
Sbjct: 225 SILFSLLLRVGDYGAVWKLFRDVVRKGPRPN---NYMFNVMIRGF----------CRKGC 284

Query: 74  ELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISS 133
               E L HV  KF CEPDVY +N +INANCL+GQSS ALHWVNLMI NGCK S  T S+
Sbjct: 285 SRIGEGLLHVMRKFRCEPDVYAYNMLINANCLEGQSSDALHWVNLMIANGCKPSTVTFST 337

Query: 134 VIDAFC 138
           VI+AFC
Sbjct: 345 VINAFC 337

[Close]
BLAST of Carg06327 vs. ExPASy TrEMBL
Match: A0A0A0L7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-16
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 76  ERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDA 135
           E L HV  KF CEPDVY +N VINANCLKGQSS ALH +NLMI NGCK SIAT  ++IDA
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 136 FC 138
           FC
Sbjct: 337 FC 338

[Close]
BLAST of Carg06327 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 76  ERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDA 135
           E  E + SK  CEPD + +N +I++ C KG+  +AL+ +  M  +GC  S+ T +++ID 
Sbjct: 421 ELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 480

Query: 136 FC 138
           FC
Sbjct: 481 FC 481

[Close]
BLAST of Carg06327 vs. TAIR 10
Match: AT1G62720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 5.0e-06
Identity = 18/50 (36.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 88  EPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDAFC 138
           +PDV+ +N++IN  C+ G+  +A   ++LM+T GC   + T +++I+ FC
Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFC 325

[Close]
BLAST of Carg06327 vs. TAIR 10
Match: AT1G62910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-05
Identity = 20/62 (32.26%), Postives = 36/62 (58.06%), Query Frame = 0 

Query: 76  ERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDA 135
           E+L     K S +PD++ ++++IN  C+  +  +A H   LMI+  C  ++ T S++I  
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKG 407

Query: 136 FC 138
           FC
Sbjct: 408 FC 409

[Close]
BLAST of Carg06327 vs. TAIR 10
Match: AT1G63400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 4.2e-05
Identity = 19/62 (30.65%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 76  ERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDA 135
           E+L     K S +PD++ ++++IN  C+  +  +A H   LMI+  C  ++ T +++I+ 
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409

Query: 136 FC 138
           FC
Sbjct: 410 FC 411

[Close]
BLAST of Carg06327 vs. TAIR 10
Match: AT1G12700.1 (ATP binding;nucleic acid binding;helicases )

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-05
Identity = 22/73 (30.14%), Postives = 36/73 (49.32%), Query Frame = 0 

Query: 65  CQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKS 124
           C C      F   +     K   EPD    NT+I    L+G+ S+A+  V+ M+ NGC+ 
Sbjct: 132 CFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQP 191

Query: 125 SIATISSVIDAFC 138
            + T +S+++  C
Sbjct: 192 DVVTYNSIVNGIC 204

The following BLAST results are available for this feature:
BLAST of Carg06327 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028723.14.6e-78100.00Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
KAG6597254.15.6e-7699.28Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022974740.14.3e-5291.23pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucur... [more]
KAG6582510.11.1e-1849.21Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022980209.14.1e-1848.41pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita maxima] >X... [more]
BLAST of Carg06327 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFF11.4e-0538.71Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
Q9SI787.1e-0536.00Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX... [more]
Q9LQ164.6e-0432.26Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX... [more]
Q9SH266.0e-0430.65Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg06327 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IER32.1e-5291.23pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like OS=Cuc... [more]
A0A6J1IVM82.0e-1848.41pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita maxima O... [more]
A0A6J1E9F22.6e-1847.62pentatricopeptide repeat-containing protein At5g39710-like OS=Cucurbita moschata... [more]
A0A6J1D0U77.6e-1846.83pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charanti... [more]
A0A0A0L7U22.4e-1672.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1[more]
BLAST of Carg06327 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53700.11.0e-0638.71Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62720.15.0e-0636.00Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G62910.13.3e-0532.26Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G63400.14.2e-0530.65Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G12700.17.2e-0530.14ATP binding;nucleic acid binding;helicases [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 89..137
e-value: 5.7E-8
score: 32.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 53..139
e-value: 4.0E-10
score: 41.5
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 74..137
NoneNo IPR availablePANTHERPTHR47941:SF9PPR CONTAINING PLANT-LIKE PROTEINcoord: 74..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06327-RACarg06327-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding