Carg06323 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06323
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 7830879 .. 7831210 (+)
RNA-Seq ExpressionCarg06323
SyntenyCarg06323
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTTCTCACTCTACCTGTCCTTCTCTCTCTAGAATCCTCCATTGTTGCCCAACAGACTGGCGCTTCTCTGTCACCTAAATTCTCTCGGAAAAATTCTCTGCTCTTCACATTCACTGTCACTTCGGATTCTGGAAGATTCTTCGCCGTCTCTTTTCCGTGCGTAAGTTCTTCATTCGCGTTTTATGCATTTCTCGTTCCTTGGTTGTTGCATTTTCTTTGATGCATGGCGGTTGTTTGGAACTTTGTATGAATTTCCTGATGGTTTTGGTTGTGTGTGATTGATTGTAGGGGAAAGAAAAGCCGGAGGTGATTTCTGTAGAGAATTCTTGA

mRNA sequence

CGTTTTCTCACTCTACCTGTCCTTCTCTCTCTAGAATCCTCCATTGTTGCCCAACAGACTGGCGCTTCTCTGTCACCTAAATTCTCTCGGAAAAATTCTCTGCTCTTCACATTCACTGTCACTTCGGATTCTGGAAGATTCTTCGCCGTCTCTTTTCCGTGCGGGAAAGAAAAGCCGGAGGTGATTTCTGTAGAGAATTCTTGA

Coding sequence (CDS)

CGTTTTCTCACTCTACCTGTCCTTCTCTCTCTAGAATCCTCCATTGTTGCCCAACAGACTGGCGCTTCTCTGTCACCTAAATTCTCTCGGAAAAATTCTCTGCTCTTCACATTCACTGTCACTTCGGATTCTGGAAGATTCTTCGCCGTCTCTTTTCCGTGCGGGAAAGAAAAGCCGGAGGTGATTTCTGTAGAGAATTCTTGA

Protein sequence

RFLTLPVLLSLESSIVAQQTGASLSPKFSRKNSLLFTFTVTSDSGRFFAVSFPCGKEKPEVISVENS
Homology
[Close]
BLAST of Carg06323 vs. NCBI nr
Match: KAG7028727.1 (hypothetical protein SDJN02_09908, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  RFLTLPVLLSLESSIVAQQTGASLSPKFSRKNSLLFTFTVTSDSGRFFAVSFPCGKEKPE 60
          RFLTLPVLLSLESSIVAQQTGASLSPKFSRKNSLLFTFTVTSDSGRFFAVSFPCGKEKPE
Sbjct: 1  RFLTLPVLLSLESSIVAQQTGASLSPKFSRKNSLLFTFTVTSDSGRFFAVSFPCGKEKPE 60

Query: 61 VISVENS 68
          VISVENS
Sbjct: 61 VISVENS 67

[Close]
BLAST of Carg06323 vs. NCBI nr
Match: KAG6597257.1 (hypothetical protein SDJN03_10437, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 11 LESSIVAQQTGASLSPKFSRKNSLLFTFTVTSDSGRFFAVSFPCGKEKPEVISVENS 68
          L+SSIVAQQTGASLSPKFSRKNSLLFTFTVTSDSGRFFAVSFPCGKEKPEVISVENS
Sbjct: 41 LKSSIVAQQTGASLSPKFSRKNSLLFTFTVTSDSGRFFAVSFPCGKEKPEVISVENS 97

The following BLAST results are available for this feature:
BLAST of Carg06323 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028727.16.7e-27100.00hypothetical protein SDJN02_09908, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597257.12.5e-2198.25hypothetical protein SDJN03_10437, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg06323 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06323 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06323 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06323-RACarg06323-RAmRNA