Carg06231 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06231
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	plastid-lipid-associated protein 6, chloroplastic
Location	Carg_Chr06: 8411955 .. 8413616 (+)
RNA-Seq Expression	Carg06231
Synteny	Carg06231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTAGCGAGCTCTGTGCTTCACTCGCCACTCCAGATCTGTTCTTCCGATTCTTCTTCTTCTGGGTTTCTATCTCCACCCAGAATCCATGGGTTTGCACCCAATTTCAAGGTCAAGTGTTCCAGCCGCCGGCCTCTGCGTTCCGGCGACGGCCGACCCAGAAGAAGTTTCTATTTGAAGTCGGCTTCCGATTCCTCTCCTTCTCTTGTTGATGATTACAAGGCTAACTCTGAACTGCTTGCATCGTTGAAGATCAAGCTACTGGTGGGTCTCTCTTTTGCCTCTCATTCCTCTGTTTCAATTGATTGATTGAAAGTGGGTGTCAACAGTCAAGAACACATGTAGAAGCTTTAAGTATAGCATGTGGAGAATTGTTGGGAGGGAGTCCTAATGAGTGGTTATCTCAAATTGGACAATATCATATTATCATGGAGATCCGTGGTTCCTAACTTGCTCTTCTTTTTCATTATACTAGAGTGCGGTTTCCGGGTTAAATAGAGGTCTTGCTGCAAATGAGGGTGATTTACAGAAGGCAGATGAGGCTGCCAAAGAGATTGAAGCTGAAACTTATTTAGTGAACAATGTTCGTGTTCCTTTATGTTTGTGTTGAGGATGGCTAGGAGGGAGTCCCACGTTAGCTAATTTAAGAAACGATCATGGGTTTATAAGTAAGGAGTACATCTCCATTGGTATGAGGTCTTTTGGGGATGCTCAAAGTAAAGCCATGAGAGCTTATGCTCAATGTGGACAATATCATACCATTGTAGAGAGTCGTGATTCCTAACATGGTATCGGAGCTATGCTCTTAACTTAGTCATGTCAATAAAATCCTCAAATGTCGAACAAATAAGTTGTGAGCCTCGAAAGTGTAGTCAAAAGGAACTAAAGTATTGAATAGAAAGTGTACTTTGTTTGAGAGCTCTAGAGAAAGAGTTGAACCTTGATTAAAGGGAGGCTGTTCGAAGGCTCCATAGGCCTCAGGGAAGGCTCTATGGTGTACTTTGTTCGAGGGGAGGATTGTTGGGAAAGGAGTCCCACATCGACTAATTAAGGGGTTGATCATGGGTTTATAAGGAATACATCTCCATTGGTACGAGGTCTTTTAGGAAAACCTTTATGTTCGAAGTGGACAATATCATACCATTGTGGAGACTCGTGGTTTCTAACAAGGTTGACTTTCAAATTTCCATCAATAGGTTTTTCAGCGGATCGACGTCATCAGCAAAGATTTCGACAACATCGTAGAGCTCGAGTTAGGAGCTCCTTGGCCACTACCTCCTGCTGAAGTCACTGCTACATTAGCTCACGTGTTTGAAATCATAGGTTGGTTCTCTAAGGATATTCTTCACCTTATGGTGTTACAATTACAAGGCCATTGCTATGCAACTTCCCATGTCTTAACTAGAAGAATTGTTCTATTGTCTACTTGTACTGAGATCAGGTTCTGCTAAGATAAAGATAACTTTTCAGAAAACCACCGTGAAAGCCACTGGAAACTTGTCACAGCTTCCTCCATTAGAGGTACCTCGGCTTCCAGATGCGCTAAGGCCTCCATCCAACACTGGAAGTGGCGACTTTGAAGTCACTTACCTTGACAATGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGAGTGTTTGTTATTTCATAA

mRNA sequence

ATGGCTGCTCTAGCGAGCTCTGTGCTTCACTCGCCACTCCAGATCTGTTCTTCCGATTCTTCTTCTTCTGGGTTTCTATCTCCACCCAGAATCCATGGGTTTGCACCCAATTTCAAGGTCAAGTGTTCCAGCCGCCGGCCTCTGCGTTCCGGCGACGGCCGACCCAGAAGAAGTTTCTATTTGAAGTCGGCTTCCGATTCCTCTCCTTCTCTTGTTGATGATTACAAGGCTAACTCTGAACTGCTTGCATCGTTGAAGATCAAGCTACTGGTGGAAGAATTGTTCTATTGTCTACTTGTACTGAGATCAGGTTCTGCTAAGATAAAGATAACTTTTCAGAAAACCACCGTGAAAGCCACTGGAAACTTGTCACAGCTTCCTCCATTAGAGGTACCTCGGCTTCCAGATGCGCTAAGGCCTCCATCCAACACTGGAAGTGGCGACTTTGAAGTCACTTACCTTGACAATGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGAGTGTTTGTTATTTCATAA

Coding sequence (CDS)

ATGGCTGCTCTAGCGAGCTCTGTGCTTCACTCGCCACTCCAGATCTGTTCTTCCGATTCTTCTTCTTCTGGGTTTCTATCTCCACCCAGAATCCATGGGTTTGCACCCAATTTCAAGGTCAAGTGTTCCAGCCGCCGGCCTCTGCGTTCCGGCGACGGCCGACCCAGAAGAAGTTTCTATTTGAAGTCGGCTTCCGATTCCTCTCCTTCTCTTGTTGATGATTACAAGGCTAACTCTGAACTGCTTGCATCGTTGAAGATCAAGCTACTGGTGGAAGAATTGTTCTATTGTCTACTTGTACTGAGATCAGGTTCTGCTAAGATAAAGATAACTTTTCAGAAAACCACCGTGAAAGCCACTGGAAACTTGTCACAGCTTCCTCCATTAGAGGTACCTCGGCTTCCAGATGCGCTAAGGCCTCCATCCAACACTGGAAGTGGCGACTTTGAAGTCACTTACCTTGACAATGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGAGTGTTTGTTATTTCATAA

Protein sequence

MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFYLKSASDSSPSLVDDYKANSELLASLKIKLLVEELFYCLLVLRSGSAKIKITFQKTTVKATGNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS

Homology

[Close]

BLAST of Carg06231 vs. NCBI nr
Match: KAG7028817.1 (Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.3 bits (861), Expect = 1.6e-88
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY
Sbjct: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60

Query: 61  LKSASDSSPSLVDDYKANSELLASLKIKLLVEELFYCLLVLRSGSAKIKITFQKTTVKAT 120
           LKSASDSSPSLVDDYKANSELLASLKIKLLVEELFYCLLVLRSGSAKIKITFQKTTVKAT
Sbjct: 61  LKSASDSSPSLVDDYKANSELLASLKIKLLVEELFYCLLVLRSGSAKIKITFQKTTVKAT 120

Query: 121 GNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 175
           GNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS
Sbjct: 121 GNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 174

[Close]

BLAST of Carg06231 vs. NCBI nr
Match: KAG6597353.1 (Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.8 bits (673), Expect = 1.0e-66
Identity = 163/282 (57.80%), Postives = 168/282 (59.57%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY
Sbjct: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60

Query: 61  LKSASDSSPSLVDDYKANSELLASLKIKLL------------------------------ 120
           LKSASDSSPSLVDDYKANSELLASLKIKLL                              
Sbjct: 61  LKSASDSSPSLVDDYKANSELLASLKIKLLSAVSGLNRGLAANEGDLQKADEAAKEIEAA 120

Query: 121 ----------------------------------------------VEELFYCLLVLRS- 175
                                                         + ++F  + V+   
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180

[Close]

BLAST of Carg06231 vs. NCBI nr
Match: XP_022947374.1 (plastid-lipid-associated protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 5.0e-66
Identity = 161/282 (57.09%), Postives = 168/282 (59.57%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFK+KCSSRRPLRSGDGRPRRSFY
Sbjct: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKLKCSSRRPLRSGDGRPRRSFY 60

Query: 61  LKSASDSSPSLVDDYKANSELLASLKIKLL------------------------------ 120
           LKSASDSSPSLVDDYKAN+ELLASLKIKLL                              
Sbjct: 61  LKSASDSSPSLVDDYKANAELLASLKIKLLSAVSGLNRGLAANEGDLQKADEAAKEIEAA 120

Query: 121 ----------------------------------------------VEELFYCLLVLRS- 175
                                                         + ++F  + V+   
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180

[Close]

BLAST of Carg06231 vs. NCBI nr
Match: XP_022974499.1 (plastid-lipid-associated protein 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-62
Identity = 155/282 (54.96%), Postives = 165/282 (58.51%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAA+A+SVLHSPLQICSSDSSSSGFLSP RIHGFAPNFK+KCSSRRPL SGDGRP+RSFY
Sbjct: 1   MAAVATSVLHSPLQICSSDSSSSGFLSPSRIHGFAPNFKLKCSSRRPLLSGDGRPKRSFY 60

Query: 61  LKSASDSSPSLVDDYKANSELLASLKIKLL------------------------------ 120
           LKSASDSSPSL DDYKANSELLASLK+KLL                              
Sbjct: 61  LKSASDSSPSLDDDYKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADEAAKEIEAA 120

Query: 121 ----------------------------------------------VEELFYCLLVLRS- 175
                                                         + ++F  + V+   
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180

[Close]

BLAST of Carg06231 vs. NCBI nr
Match: XP_023521272.1 (plastid-lipid-associated protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023540719.1 plastid-lipid-associated protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.1 bits (614), Expect = 7.0e-60
Identity = 153/282 (54.26%), Postives = 161/282 (57.09%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAALASSVLHSPLQICSSD SSSGFLSP RIHGFAP+FK+KCSSRRPL SGDGRPRRS Y
Sbjct: 1   MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCY 60

Query: 61  LKSASDSSPSLVDDYKANSELLASLKIKLL------------------------------ 120
           LKSASDS PSL DD KANSELLASLK+KLL                              
Sbjct: 61  LKSASDSPPSLDDDSKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADEAAKEIEAA 120

Query: 121 ----------------------------------------------VEELFYCLLVLRS- 175
                                                         + ++F  + V+   
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180

[Close]

BLAST of Carg06231 vs. ExPASy Swiss-Prot
Match: Q9LW57 (Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP6 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-25
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 104 GSAKIKITFQKTTVKATGNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRG 163
           G+ KIKITF+KTTVK +GNLSQ+PP ++PRLPD+ RP SN G+GDFEVTY+D+  RITRG
Sbjct: 214 GTCKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRG 273

Query: 164 DRGELRVFVIS 175
           DRGELRVFVI+
Sbjct: 274 DRGELRVFVIA 284

[Close]

BLAST of Carg06231 vs. ExPASy TrEMBL
Match: A0A6J1G6L7 (plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451256 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.4e-66
Identity = 161/282 (57.09%), Postives = 168/282 (59.57%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFK+KCSSRRPLRSGDGRPRRSFY
Sbjct: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKLKCSSRRPLRSGDGRPRRSFY 60

Query: 61  LKSASDSSPSLVDDYKANSELLASLKIKLL------------------------------ 120
           LKSASDSSPSLVDDYKAN+ELLASLKIKLL                              
Sbjct: 61  LKSASDSSPSLVDDYKANAELLASLKIKLLSAVSGLNRGLAANEGDLQKADEAAKEIEAA 120

Query: 121 ----------------------------------------------VEELFYCLLVLRS- 175
                                                         + ++F  + V+   
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180

[Close]

BLAST of Carg06231 vs. ExPASy TrEMBL
Match: A0A6J1IHR9 (plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473175 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.3e-63
Identity = 155/282 (54.96%), Postives = 165/282 (58.51%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAA+A+SVLHSPLQICSSDSSSSGFLSP RIHGFAPNFK+KCSSRRPL SGDGRP+RSFY
Sbjct: 1   MAAVATSVLHSPLQICSSDSSSSGFLSPSRIHGFAPNFKLKCSSRRPLLSGDGRPKRSFY 60

Query: 61  LKSASDSSPSLVDDYKANSELLASLKIKLL------------------------------ 120
           LKSASDSSPSL DDYKANSELLASLK+KLL                              
Sbjct: 61  LKSASDSSPSLDDDYKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADEAAKEIEAA 120

Query: 121 ----------------------------------------------VEELFYCLLVLRS- 175
                                                         + ++F  + V+   
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180

[Close]

BLAST of Carg06231 vs. ExPASy TrEMBL
Match: A0A1S3AX61 (probable plastid-lipid-associated protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483576 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.2e-42
Identity = 130/289 (44.98%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAALASSVL SPLQI +SD SS G L   RIH  AP+F +KCS R+ L SGDG  RR+  
Sbjct: 1   MAALASSVLQSPLQIRTSD-SSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGDGGSRRNLS 60

Query: 61  LKSAS-------DSSPSLVDDYKANSELLASLKIKLL----------------------- 120
           LKS S        S PS+VD+YKA SELLASLKIKLL                       
Sbjct: 61  LKSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEA 120

Query: 121 -----------------------------------------------------VEELFYC 175
                                                                + ++F  
Sbjct: 121 AKEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 180

[Close]

BLAST of Carg06231 vs. ExPASy TrEMBL
Match: A0A6J1D0Q0 (plastid-lipid-associated protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015945 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.3e-42
Identity = 129/290 (44.48%), Postives = 145/290 (50.00%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAAL SS+L SP QI   D SS GF SP RI   APN  +K S RRPL S DGRPRRSF 
Sbjct: 3   MAALVSSLLQSPAQISHFD-SSYGFFSPSRIRRTAPNIGLKSSRRRPLLSDDGRPRRSFS 62

Query: 61  LKSASD--------SSPSLVDDYKANSELLASLKIKLL---------------------- 120
           LKSASD        +SPS+  + KANSELLASLK+KLL                      
Sbjct: 63  LKSASDNVYSDPAAASPSIDGEDKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADE 122

Query: 121 ------------------------------------------------------VEELFY 175
                                                                 + ++F 
Sbjct: 123 AAKEIEAVGGPVDLSVDLDRLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQ 182

[Close]

BLAST of Carg06231 vs. ExPASy TrEMBL
Match: A0A5D3D241 (Putative plastid-lipid-associated protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001790 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.6e-41
Identity = 129/289 (44.64%), Postives = 144/289 (49.83%), Query Frame = 0


Query: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
           MAALASSVL SPLQI +SD SS G L   RIH  AP+F +KCS R+ L SG G  RR+  
Sbjct: 1   MAALASSVLQSPLQIRTSD-SSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGVGGSRRNLS 60

Query: 61  LKSAS-------DSSPSLVDDYKANSELLASLKIKLL----------------------- 120
           LKS S        S PS+VD+YKA SELLASLKIKLL                       
Sbjct: 61  LKSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEA 120

Query: 121 -----------------------------------------------------VEELFYC 175
                                                                + ++F  
Sbjct: 121 AKEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 180

[Close]

BLAST of Carg06231 vs. TAIR 10
Match: AT3G23400.1 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-26
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 104 GSAKIKITFQKTTVKATGNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRG 163
           G+ KIKITF+KTTVK +GNLSQ+PP ++PRLPD+ RP SN G+GDFEVTY+D+  RITRG
Sbjct: 214 GTCKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRG 273

Query: 164 DRGELRVFVIS 175
           DRGELRVFVI+
Sbjct: 274 DRGELRVFVIA 284

The following BLAST results are available for this feature:

BLAST of Carg06231 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028817.1	1.6e-88	100.00	Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosper...	[more]
KAG6597353.1	1.0e-66	57.80	Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022947374.1	5.0e-66	57.09	plastid-lipid-associated protein 6, chloroplastic [Cucurbita moschata]	[more]
XP_022974499.1	1.5e-62	54.96	plastid-lipid-associated protein 6, chloroplastic [Cucurbita maxima]	[more]
XP_023521272.1	7.0e-60	54.26	plastid-lipid-associated protein 6, chloroplastic-like [Cucurbita pepo subsp. pe...	[more]

BLAST of Carg06231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW57	7.6e-25	73.24	Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Carg06231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6L7	2.4e-66	57.09	plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1IHR9	7.3e-63	54.96	plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S3AX61	4.2e-42	44.98	probable plastid-lipid-associated protein 6, chloroplastic OS=Cucumis melo OX=36...	[more]
A0A6J1D0Q0	9.3e-42	44.48	plastid-lipid-associated protein 6, chloroplastic OS=Momordica charantia OX=3673...	[more]
A0A5D3D241	4.6e-41	44.64	Putative plastid-lipid-associated protein 6 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Carg06231 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23400.1	5.4e-26	73.24	Plastid-lipid associated protein PAP / fibrillin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006843	Plastid lipid-associated protein/fibrillin conserved domain	PFAM	PF04755	PAP_fibrillin	coord: 105..171 e-value: 2.9E-14 score: 53.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..68
None	No IPR available	PANTHER	PTHR31906:SF15	PLASTID-LIPID-ASSOCIATED PROTEIN 6, CHLOROPLASTIC	coord: 104..174
IPR039633	Plastid-lipid-associated protein	PANTHER	PTHR31906	FAMILY NOT NAMED	coord: 104..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06231-RA	Carg06231-RA	mRNA