Carg06214 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06214
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-H2 finger protein ATL16
Location	Carg_Chr06: 8486778 .. 8487749 (+)
RNA-Seq Expression	Carg06214
Synteny	Carg06214

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGTTCCCCCAACTCAAATCTTCCCATTACCTTCCTCCATTTCCGCCGCCAATTCCTTCCCATTCCGACTCCACCAGCTTCCCCATTATCGCCATTGCCATCATCGGAATTCTCGCCACCGCTTTCTTGCTCCTCAGCTACTACGTTTTCGTCATCAATTGCTGCCTCAACTGGCACCGCATCGATCTCCTCCGCCGTCTCTCCCTCTCCTCGAGGCGCCGCCGCCCACCGCCCACCACTCATTCTCCACCCATTCACACAAGGGGTCTCGACGAATCGGTCATTAGATCAATCCCGTTAGTTCAATACAAGAATTCAATACCCAGAGGAAAAACCTCGTCGGAATGCTCTGTTTGTTTGAGTGAATTTGGAGAGGATGAAACGGTGAGAATCATTCCCATTTGTTCACATCTTTTTCACATTGATTGCATCGACATTTGGCTGCAAAACAATCCCAATTGCCCATTATGTCGAACCACCATTTCCAGCTCTACTCTGTTTCATCGATTTCCCCTGCCAACCTCCTCGCCGGCGGATCCAATCGGCGGTGGAAATGAAAGAGACTTCGTAGTAATTGAATTGGGTGGGATTAGAAACGACCCATCTGGTCAATTGTCACAAGAACGGCCAAATTCAGGGGAATGTCCGGCGACAACCGGAAAATTGGAACAGGGGAAGAAGCGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAGAGAAAGACGAGAGGTTTTGTGTTCAGCCGATTAGACGGTCGGTTTCGATGGACTCGTCGGCGGAACGACAGATGTATTTGGCAGTGCAGGCGGCGCTGCGTGGGAGTACGGCGAGCCCCGGCGGCGATGGGTGTCATGGAAGAGGGAGGAGGTCTCTGTTTTCGTTTGGGAATGGGATGAGTTGCAGAAATGGCGTTGAAGTTCAGGCGGTGCGGTTGGAAGAGAGTTAG

mRNA sequence

ATGGAGTTGTTCCCCCAACTCAAATCTTCCCATTACCTTCCTCCATTTCCGCCGCCAATTCCTTCCCATTCCGACTCCACCAGCTTCCCCATTATCGCCATTGCCATCATCGGAATTCTCGCCACCGCTTTCTTGCTCCTCAGCTACTACGTTTTCGTCATCAATTGCTGCCTCAACTGGCACCGCATCGATCTCCTCCGCCGTCTCTCCCTCTCCTCGAGGCGCCGCCGCCCACCGCCCACCACTCATTCTCCACCCATTCACACAAGGGGTCTCGACGAATCGGTCATTAGATCAATCCCGTTAGTTCAATACAAGAATTCAATACCCAGAGGAAAAACCTCGTCGGAATGCTCTGTTTGTTTGAGTGAATTTGGAGAGGATGAAACGGTGAGAATCATTCCCATTTGTTCACATCTTTTTCACATTGATTGCATCGACATTTGGCTGCAAAACAATCCCAATTGCCCATTATGTCGAACCACCATTTCCAGCTCTACTCTGTTTCATCGATTTCCCCTGCCAACCTCCTCGCCGGCGGATCCAATCGGCGGTGGAAATGAAAGAGACTTCGTAGTAATTGAATTGGGTGGGATTAGAAACGACCCATCTGGTCAATTGTCACAAGAACGGCCAAATTCAGGGGAATGTCCGGCGACAACCGGAAAATTGGAACAGGGGAAGAAGCGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAGAGAAAGACGAGAGGTTTTGTGTTCAGCCGATTAGACGGTCGGTTTCGATGGACTCGTCGGCGGAACGACAGATGTATTTGGCAGTGCAGGCGGCGCTGCGTGGGAGTACGGCGAGCCCCGGCGGCGATGGGTGTCATGGAAGAGGGAGGAGGTCTCTGTTTTCGTTTGGGAATGGGATGAGTTGCAGAAATGGCGTTGAAGTTCAGGCGGTGCGGTTGGAAGAGAGTTAG

Coding sequence (CDS)

ATGGAGTTGTTCCCCCAACTCAAATCTTCCCATTACCTTCCTCCATTTCCGCCGCCAATTCCTTCCCATTCCGACTCCACCAGCTTCCCCATTATCGCCATTGCCATCATCGGAATTCTCGCCACCGCTTTCTTGCTCCTCAGCTACTACGTTTTCGTCATCAATTGCTGCCTCAACTGGCACCGCATCGATCTCCTCCGCCGTCTCTCCCTCTCCTCGAGGCGCCGCCGCCCACCGCCCACCACTCATTCTCCACCCATTCACACAAGGGGTCTCGACGAATCGGTCATTAGATCAATCCCGTTAGTTCAATACAAGAATTCAATACCCAGAGGAAAAACCTCGTCGGAATGCTCTGTTTGTTTGAGTGAATTTGGAGAGGATGAAACGGTGAGAATCATTCCCATTTGTTCACATCTTTTTCACATTGATTGCATCGACATTTGGCTGCAAAACAATCCCAATTGCCCATTATGTCGAACCACCATTTCCAGCTCTACTCTGTTTCATCGATTTCCCCTGCCAACCTCCTCGCCGGCGGATCCAATCGGCGGTGGAAATGAAAGAGACTTCGTAGTAATTGAATTGGGTGGGATTAGAAACGACCCATCTGGTCAATTGTCACAAGAACGGCCAAATTCAGGGGAATGTCCGGCGACAACCGGAAAATTGGAACAGGGGAAGAAGCGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAGAGAAAGACGAGAGGTTTTGTGTTCAGCCGATTAGACGGTCGGTTTCGATGGACTCGTCGGCGGAACGACAGATGTATTTGGCAGTGCAGGCGGCGCTGCGTGGGAGTACGGCGAGCCCCGGCGGCGATGGGTGTCATGGAAGAGGGAGGAGGTCTCTGTTTTCGTTTGGGAATGGGATGAGTTGCAGAAATGGCGTTGAAGTTCAGGCGGTGCGGTTGGAAGAGAGTTAG

Protein sequence

MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPADPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLGDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSLFSFGNGMSCRNGVEVQAVRLEES

Homology

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BLAST of Carg06214 vs. NCBI nr
Match: KAG7028833.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 654.1 bits (1686), Expect = 6.5e-184
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV
Sbjct: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300

Query: 301 FSFGNGMSCRNGVEVQAVRLEES 324
           FSFGNGMSCRNGVEVQAVRLEES
Sbjct: 301 FSFGNGMSCRNGVEVQAVRLEES 323

[Close]

BLAST of Carg06214 vs. NCBI nr
Match: XP_022942390.1 (RING-H2 finger protein ATL16 [Cucurbita moschata])

HSP 1 Score: 642.1 bits (1655), Expect = 2.5e-180
Identity = 318/323 (98.45%), Postives = 319/323 (98.76%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MESFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSI RGKTSSECSV
Sbjct: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIARGKTSSECSV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPA  GKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPAAAGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

Query: 301 FSFGNGMSCRNGVEVQAVRLEES 324
           FSFGNGMSCRNGVEVQAVRLEES
Sbjct: 301 FSFGNGMSCRNGVEVQAVRLEES 323

[Close]

BLAST of Carg06214 vs. NCBI nr
Match: XP_023540628.1 (RING-H2 finger protein ATL16 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 634.8 bits (1636), Expect = 4.1e-178
Identity = 316/323 (97.83%), Postives = 317/323 (98.14%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MEFFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HRIDLLRRL LSSRRRRPPPTT SPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV
Sbjct: 61  HRIDLLRRLPLSSRRRRPPPTTPSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSS LFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSALFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPAT GKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATAGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300
           DE IDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DESIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

Query: 301 FSFGNGMSCRNGVEVQAVRLEES 324
           FSFGNGMSCRNGVEVQAVRLEES
Sbjct: 301 FSFGNGMSCRNGVEVQAVRLEES 323

[Close]

BLAST of Carg06214 vs. NCBI nr
Match: XP_022975064.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 625.2 bits (1611), Expect = 3.2e-175
Identity = 311/323 (96.28%), Postives = 314/323 (97.21%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQ+KSS YLPPFPPP PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MEFFPQIKSSQYLPPFPPPNPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HRIDLLRRLSLSSRRRRP P THSPPI TRGLDESVIRSIPLVQYKNSI RGKTSSECSV
Sbjct: 61  HRIDLLRRLSLSSRRRRPAPNTHSPPIDTRGLDESVIRSIPLVQYKNSIARGKTSSECSV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSS LFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSALFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           +PIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKR KLQKVTSLG
Sbjct: 181 EPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRWKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

Query: 301 FSFGNGMSCRNGVEVQAVRLEES 324
           FSFGNGMSCRNGVEVQAVRLEES
Sbjct: 301 FSFGNGMSCRNGVEVQAVRLEES 323

[Close]

BLAST of Carg06214 vs. NCBI nr
Match: XP_038877360.1 (RING-H2 finger protein ATL16 [Benincasa hispida])

HSP 1 Score: 523.9 bits (1348), Expect = 1.0e-144
Identity = 263/327 (80.43%), Postives = 287/327 (87.77%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           M+ F ++++S ++PPFPPP   +   +SFPII IAIIGILATA LLLSYYVFVINCCLNW
Sbjct: 1   MDFFTKIRTSQHIPPFPPPNLPNPSHSSFPIIVIAIIGILATALLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HRIDLLRRLS SS RR P PT +SP I  RGLD+SVIRSIPL+QYK S+P+ KTSSEC+V
Sbjct: 61  HRIDLLRRLSPSSTRRLPSPTAYSPAIENRGLDDSVIRSIPLLQYKKSVPKEKTSSECAV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEF EDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSS LFHRFPLP+SSP 
Sbjct: 121 CLSEFEEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSVLFHRFPLPSSSPE 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGG ERDFVVIELGG RNDPSGQ SQ+R +SGE PA  GKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGGERDFVVIELGGNRNDPSGQFSQDRASSGELPA--GKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAAL----RGSTASPGGDGCHGRG 300
           DEWIDTR+KDE+FC+QPIRRSVSMDSSAERQMYLAVQAAL    RGS  SPGGDGC+GRG
Sbjct: 241 DEWIDTRQKDEQFCIQPIRRSVSMDSSAERQMYLAVQAALQQSRRGSAVSPGGDGCNGRG 300

Query: 301 RRSLFSFGNGMSCRNGVEVQAVRLEES 324
           RRSLFSFGNG SCRN V+VQ VRLEE+
Sbjct: 301 RRSLFSFGNGRSCRNAVQVQPVRLEEN 325

[Close]

BLAST of Carg06214 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.6e-76
Identity = 178/356 (50.00%), Postives = 227/356 (63.76%), Query Frame = 0


Query: 7   LKSSHYLPPFPPPI--PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRID 66
           L+   + PP PPPI   + S  TSFPI+A+A+IGILATAFLL+SYYVFVI CCLNWHRID
Sbjct: 10  LRDLSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRID 69

Query: 67  LLRRLSLSSRRR--RPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRG---------- 126
           +L R SLS RRR  + P   +SP + +RGLDESVIR+IP+ ++K    +           
Sbjct: 70  ILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEE 129

Query: 127 ---KTSSECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLF 186
              K S ECSVCLSEF ++E +RIIP CSHLFHIDCID+WLQNN NCPLCRT +S  T F
Sbjct: 130 EEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSF 189

Query: 187 --HRFPLPTSSPADPIGGGNERDFVVIELGGI----RNDP-SGQL--SQERPNSG----- 246
              R   P++SP + +    E ++VVIELG      R+ P  G+L   QER NSG     
Sbjct: 190 PPDRVSAPSTSPENLVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNE 249

Query: 247 ----ECPATTGKLEQG---KKRRKLQKVTSLGDEWIDTRE-KDERF-CVQPIRRSVSMDS 306
                   +  KL++G   +K RKL K+TS+GDE ID R  KDE+F  +QPIRRS+SMDS
Sbjct: 250 NTQNSISPSPKKLDRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDS 309

Query: 307 SAERQMYLAVQAALR-----------GSTASPGGDGCHGRGRRSLFSFGNGMSCRN 312
           SA+RQ+YLAVQ A+R           G  +S  G+  + + +RS FSFG+    R+
Sbjct: 310 SADRQLYLAVQEAIRKNREVLVVGDGGGCSSSSGNVSNSKVKRSFFSFGSSRRSRS 365

[Close]

BLAST of Carg06214 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.6e-63
Identity = 160/360 (44.44%), Postives = 198/360 (55.00%), Query Frame = 0


Query: 15  PFPPPIPS-----------HSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRI 74
           P PPP PS            S  T+FPI+AIA+IGILATAFLL+SYY+FVI CCLNWH+I
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 75  DLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYK------NSIPRGKTSSE 134
           D+ RR   SS +   P   +SP    RGLDES IR+IP+ ++K          + K S E
Sbjct: 76  DIFRRRRRSSDQN--PLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQE 135

Query: 135 CSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTS 194
           CSVCL+EF EDE +RIIP C H+FHIDCIDIWLQ N NCPLCRT++S    F    +  S
Sbjct: 136 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLI--S 195

Query: 195 SPADP---------------IGGGNERDFVVIELGGIRNDPSGQL-------SQERPNSG 254
           +P+ P               +  G + DFVVIELG    +    +        QER  S 
Sbjct: 196 APSSPRENSPHSRNRNLEPGLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSN 255

Query: 255 E------------CPATTGKLEQGKKRRKLQKVTSLGDEWIDTREKDERFC-VQPIRRSV 312
           E             P   G     KK RK  KVTS+GDE IDTR KD  F  +QPIRRS+
Sbjct: 256 EVSTGNSPKSVSPLPIKFGNRGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSI 315

[Close]

BLAST of Carg06214 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.4e-26
Identity = 93/299 (31.10%), Postives = 147/299 (49.16%), Query Frame = 0


Query: 16  FPPPIP-------SHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRIDLLRR 75
           FPPP P       S S S+SF  + IA+IGIL +A +L+SYY  +   C   H+      
Sbjct: 34  FPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSET 93

Query: 76  LSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSVCLSEFGED 135
           L+L+        +T     +  GL+ES+I+SI + +YK+        S+CSVCLSEF E+
Sbjct: 94  LNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSG-DGFVDGSDCSVCLSEFEEN 153

Query: 136 ETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPADPIGGGNE 195
           E++R++P C+H FH+ CID WL+++ NCPLCR  ++            ++P   +G   +
Sbjct: 154 ESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTG----------VNNPTASVG---Q 213

Query: 196 RDFVVIELGGIRNDPSGQLSQERPNSGECPATTG---------KLEQGKKRRKLQKVTSL 255
              VV+         +G +S+   N     + TG          LE G +    +    L
Sbjct: 214 NVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLEIGSRNSDARSELQL 273

Query: 256 GDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRR 299
            +E  +T+++D      PIRRSVS++S     + +++   LR      G  G  G  +R
Sbjct: 274 PEERRETKDEDS----LPIRRSVSLNSG----VVVSIADVLREIEDEEGESGGVGTSQR 310

[Close]

BLAST of Carg06214 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 6.0e-23
Identity = 98/321 (30.53%), Postives = 149/321 (46.42%), Query Frame = 0


Query: 16  FPPPIP-----SHSDSTSFPI---IAIAIIGILATAFLLLSYYVFVINCCLNWHRIDLLR 75
           FPPP P     + +D +S P+   + IAIIG+LA+AFLL+SYY F+   C     +  LR
Sbjct: 34  FPPPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYC---GTVSSLR 93

Query: 76  RLSLSS---------------RRRRPPPTTH-----SPPIHTRGLDESVIRSIPLVQYKN 135
                S               R       +H     SPP    GLDE++I  I + +Y+ 
Sbjct: 94  GRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPP---SGLDETLINKITVCKYRR 153

Query: 136 SIPRGKTSSECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSST 195
                 T ++CSVCL EF + E++R++P CSH FH  CID WL+++ NCPLCR  I+  T
Sbjct: 154 GDGFVHT-TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVT 213

Query: 196 LFHRFPLPTSSPADPIGGGNERDFVVIELGGIRN-DPSGQLSQERPNSGECPATTGKLEQ 255
           +    P P        GG N  + VV+ + G+ N     Q +  R ++ +       + +
Sbjct: 214 VGLASPEPEGCAPGETGGDNTHEVVVV-MDGLENLCEEQQEAVSRASTADDDHDAKDVAE 273

Query: 256 GKKR-------RKLQKVTSLGDEWIDTREKDERFCVQPI-RRSVSMDSSAERQMYLAVQA 300
           G +        R+       G    D   +D R C+  + + S+  + +A R+  L    
Sbjct: 274 GMEEANGAAEIREEGSPPKRGASSFDL-HRDNRMCIADVLQESMEDELTAARESGLLAGG 333

[Close]

BLAST of Carg06214 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 7.3e-21
Identity = 69/177 (38.98%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 16  FPPPIPS-------HSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHR------ 75
           FPPP PS        S S+ F  + IA+IGILA+AF+L+SYY  +   C   HR      
Sbjct: 37  FPPP-PSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYC---HRRRHNSS 96

Query: 76  ---IDLLRRLSL------SSRRRRPPPTTHSPPI---HTRGLDESVIRSIPLVQYKNSIP 135
                 + R+S       ++       T  +  I      GLDES+I+SI + +Y+  + 
Sbjct: 97  STSAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYR-KMD 156

Query: 136 RGKTSSECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSST 168
               SS+CSVCLSEF E+E++R++P C+H FH+ CID WL+++ NCPLCR  I +S+
Sbjct: 157 GFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of Carg06214 vs. ExPASy TrEMBL
Match: A0A6J1FW76 (RING-H2 finger protein ATL16 OS=Cucurbita moschata OX=3662 GN=LOC111447447 PE=4 SV=1)

HSP 1 Score: 642.1 bits (1655), Expect = 1.2e-180
Identity = 318/323 (98.45%), Postives = 319/323 (98.76%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MESFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSI RGKTSSECSV
Sbjct: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIARGKTSSECSV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPA  GKLEQGKKRRKLQKVTSLG
Sbjct: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPAAAGKLEQGKKRRKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

Query: 301 FSFGNGMSCRNGVEVQAVRLEES 324
           FSFGNGMSCRNGVEVQAVRLEES
Sbjct: 301 FSFGNGMSCRNGVEVQAVRLEES 323

[Close]

BLAST of Carg06214 vs. ExPASy TrEMBL
Match: A0A6J1IJC3 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111474033 PE=4 SV=1)

HSP 1 Score: 625.2 bits (1611), Expect = 1.6e-175
Identity = 311/323 (96.28%), Postives = 314/323 (97.21%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           ME FPQ+KSS YLPPFPPP PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW
Sbjct: 1   MEFFPQIKSSQYLPPFPPPNPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HRIDLLRRLSLSSRRRRP P THSPPI TRGLDESVIRSIPLVQYKNSI RGKTSSECSV
Sbjct: 61  HRIDLLRRLSLSSRRRRPAPNTHSPPIDTRGLDESVIRSIPLVQYKNSIARGKTSSECSV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSS LFHRFPLPTSSPA
Sbjct: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSALFHRFPLPTSSPA 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           +PIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKR KLQKVTSLG
Sbjct: 181 EPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRWKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRRSL 300
           DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGC+GRGRRSL
Sbjct: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCNGRGRRSL 300

Query: 301 FSFGNGMSCRNGVEVQAVRLEES 324
           FSFGNGMSCRNGVEVQAVRLEES
Sbjct: 301 FSFGNGMSCRNGVEVQAVRLEES 323

[Close]

BLAST of Carg06214 vs. ExPASy TrEMBL
Match: A0A5D3D010 (RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001510 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.5e-141
Identity = 262/327 (80.12%), Postives = 282/327 (86.24%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           M+ F ++K+S ++PPFPPP PSHS   SFPIIAIAIIGIL TAFLLLSYYVFVINCCLNW
Sbjct: 1   MDFFTKIKTSQHIPPFPPPNPSHS---SFPIIAIAIIGILVTAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HR DL+RRLS SS RR P PT +SP   TRGLDESVIRSIPL+ YK S+P  KT SEC+V
Sbjct: 61  HRFDLIRRLSPSSTRRLPSPTAYSPAFETRGLDESVIRSIPLLHYKKSMPNEKTLSECAV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEF EDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRT+ISSS LFHRFPLP+SSP 
Sbjct: 121 CLSEFEEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTSISSSVLFHRFPLPSSSPE 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIG G ERDFVVIELGGIRNDPSGQ SQER NS E PA   KLEQGKK +KLQKVTSLG
Sbjct: 181 DPIGAGGERDFVVIELGGIRNDPSGQFSQERANSRELPAV--KLEQGKKWQKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAAL----RGSTASPGGDGCHGRG 300
           DEWIDTREKDE+F +QPIRRSVSMDSSAERQMYLAVQAAL    RGS  SPGGDGC+GRG
Sbjct: 241 DEWIDTREKDEQFFIQPIRRSVSMDSSAERQMYLAVQAALQQSRRGSEVSPGGDGCNGRG 300

Query: 301 RRSLFSFGNGMSCRNGVEVQAVRLEES 324
           RRSLFSFGNG SCR+ V+VQ VRLEE+
Sbjct: 301 RRSLFSFGNGRSCRSSVQVQPVRLEEN 322

[Close]

BLAST of Carg06214 vs. ExPASy TrEMBL
Match: A0A1S3AWQ9 (RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103483603 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.5e-141
Identity = 262/327 (80.12%), Postives = 282/327 (86.24%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           M+ F ++K+S ++PPFPPP PSHS   SFPIIAIAIIGIL TAFLLLSYYVFVINCCLNW
Sbjct: 1   MDFFTKIKTSQHIPPFPPPNPSHS---SFPIIAIAIIGILVTAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HR DL+RRLS SS RR P PT +SP   TRGLDESVIRSIPL+ YK S+P  KT SEC+V
Sbjct: 61  HRFDLIRRLSPSSTRRLPSPTAYSPAFETRGLDESVIRSIPLLHYKKSMPNEKTLSECAV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEF EDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRT+ISSS LFHRFPLP+SSP 
Sbjct: 121 CLSEFEEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTSISSSVLFHRFPLPSSSPE 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPIG G ERDFVVIELGGIRNDPSGQ SQER NS E PA   KLEQGKK +KLQKVTSLG
Sbjct: 181 DPIGAGGERDFVVIELGGIRNDPSGQFSQERANSRELPAV--KLEQGKKWQKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAAL----RGSTASPGGDGCHGRG 300
           DEWIDTREKDE+F +QPIRRSVSMDSSAERQMYLAVQAAL    RGS  SPGGDGC+GRG
Sbjct: 241 DEWIDTREKDEQFFIQPIRRSVSMDSSAERQMYLAVQAALQQSRRGSEVSPGGDGCNGRG 300

Query: 301 RRSLFSFGNGMSCRNGVEVQAVRLEES 324
           RRSLFSFGNG SCR+ V+VQ VRLEE+
Sbjct: 301 RRSLFSFGNGRSCRSSVQVQPVRLEEN 322

[Close]

BLAST of Carg06214 vs. ExPASy TrEMBL
Match: A0A0A0L8B0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G135640 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 6.8e-139
Identity = 256/327 (78.29%), Postives = 279/327 (85.32%), Query Frame = 0


Query: 1   MELFPQLKSSHYLPPFPPPIPSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNW 60
           M+ F ++K+S ++PPFPPP PSHS   SFPIIAIAIIGIL TAFLLLSYYVFVINCCLNW
Sbjct: 1   MDFFTKIKTSQHIPPFPPPNPSHS---SFPIIAIAIIGILVTAFLLLSYYVFVINCCLNW 60

Query: 61  HRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSV 120
           HR DL+RRLS SS R  P PT +SP +HTRGLDESVIRSIPL+ Y  S+P  KTSSEC+V
Sbjct: 61  HRFDLIRRLSPSSTRPLPSPTAYSPALHTRGLDESVIRSIPLLHYNKSMPNHKTSSECAV 120

Query: 121 CLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPA 180
           CLSEF E ETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSS LFH FPLP+SSP 
Sbjct: 121 CLSEFQEHETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSLLFHPFPLPSSSPE 180

Query: 181 DPIGGGNERDFVVIELGGIRNDPSGQLSQERPNSGECPATTGKLEQGKKRRKLQKVTSLG 240
           DPI    ERDF+VIELGGIRN PSGQ SQER NS E PA   KLEQGKK +KLQKVTSLG
Sbjct: 181 DPIAAATERDFLVIELGGIRNHPSGQFSQERANSRELPAV--KLEQGKKWQKLQKVTSLG 240

Query: 241 DEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALR----GSTASPGGDGCHGRG 300
           DEWIDTREKDE+FC+QPIRRSVSMDSSAERQMY+AVQAAL+    G+  SPGGDGC+GRG
Sbjct: 241 DEWIDTREKDEQFCIQPIRRSVSMDSSAERQMYVAVQAALQQSRHGNEVSPGGDGCNGRG 300

Query: 301 RRSLFSFGNGMSCRNGVEVQAVRLEES 324
           RRSLFSFGNG SCRN V+VQ VRLEE+
Sbjct: 301 RRSLFSFGNGRSCRNAVQVQPVRLEEN 322

[Close]

BLAST of Carg06214 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-77
Identity = 178/356 (50.00%), Postives = 227/356 (63.76%), Query Frame = 0


Query: 7   LKSSHYLPPFPPPI--PSHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRID 66
           L+   + PP PPPI   + S  TSFPI+A+A+IGILATAFLL+SYYVFVI CCLNWHRID
Sbjct: 10  LRDLSFPPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRID 69

Query: 67  LLRRLSLSSRRR--RPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRG---------- 126
           +L R SLS RRR  + P   +SP + +RGLDESVIR+IP+ ++K    +           
Sbjct: 70  ILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEE 129

Query: 127 ---KTSSECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLF 186
              K S ECSVCLSEF ++E +RIIP CSHLFHIDCID+WLQNN NCPLCRT +S  T F
Sbjct: 130 EEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSF 189

Query: 187 --HRFPLPTSSPADPIGGGNERDFVVIELGGI----RNDP-SGQL--SQERPNSG----- 246
              R   P++SP + +    E ++VVIELG      R+ P  G+L   QER NSG     
Sbjct: 190 PPDRVSAPSTSPENLVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNE 249

Query: 247 ----ECPATTGKLEQG---KKRRKLQKVTSLGDEWIDTRE-KDERF-CVQPIRRSVSMDS 306
                   +  KL++G   +K RKL K+TS+GDE ID R  KDE+F  +QPIRRS+SMDS
Sbjct: 250 NTQNSISPSPKKLDRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDS 309

Query: 307 SAERQMYLAVQAALR-----------GSTASPGGDGCHGRGRRSLFSFGNGMSCRN 312
           SA+RQ+YLAVQ A+R           G  +S  G+  + + +RS FSFG+    R+
Sbjct: 310 SADRQLYLAVQEAIRKNREVLVVGDGGGCSSSSGNVSNSKVKRSFFSFGSSRRSRS 365

[Close]

BLAST of Carg06214 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-64
Identity = 160/360 (44.44%), Postives = 198/360 (55.00%), Query Frame = 0


Query: 15  PFPPPIPS-----------HSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRI 74
           P PPP PS            S  T+FPI+AIA+IGILATAFLL+SYY+FVI CCLNWH+I
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 75

Query: 75  DLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYK------NSIPRGKTSSE 134
           D+ RR   SS +   P   +SP    RGLDES IR+IP+ ++K          + K S E
Sbjct: 76  DIFRRRRRSSDQN--PLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQE 135

Query: 135 CSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTS 194
           CSVCL+EF EDE +RIIP C H+FHIDCIDIWLQ N NCPLCRT++S    F    +  S
Sbjct: 136 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLI--S 195

Query: 195 SPADP---------------IGGGNERDFVVIELGGIRNDPSGQL-------SQERPNSG 254
           +P+ P               +  G + DFVVIELG    +    +        QER  S 
Sbjct: 196 APSSPRENSPHSRNRNLEPGLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSN 255

Query: 255 E------------CPATTGKLEQGKKRRKLQKVTSLGDEWIDTREKDERFC-VQPIRRSV 312
           E             P   G     KK RK  KVTS+GDE IDTR KD  F  +QPIRRS+
Sbjct: 256 EVSTGNSPKSVSPLPIKFGNRGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSI 315

[Close]

BLAST of Carg06214 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-27
Identity = 93/299 (31.10%), Postives = 147/299 (49.16%), Query Frame = 0


Query: 16  FPPPIP-------SHSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHRIDLLRR 75
           FPPP P       S S S+SF  + IA+IGIL +A +L+SYY  +   C   H+      
Sbjct: 34  FPPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSET 93

Query: 76  LSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGKTSSECSVCLSEFGED 135
           L+L+        +T     +  GL+ES+I+SI + +YK+        S+CSVCLSEF E+
Sbjct: 94  LNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSG-DGFVDGSDCSVCLSEFEEN 153

Query: 136 ETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSTLFHRFPLPTSSPADPIGGGNE 195
           E++R++P C+H FH+ CID WL+++ NCPLCR  ++            ++P   +G   +
Sbjct: 154 ESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTG----------VNNPTASVG---Q 213

Query: 196 RDFVVIELGGIRNDPSGQLSQERPNSGECPATTG---------KLEQGKKRRKLQKVTSL 255
              VV+         +G +S+   N     + TG          LE G +    +    L
Sbjct: 214 NVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLEIGSRNSDARSELQL 273

Query: 256 GDEWIDTREKDERFCVQPIRRSVSMDSSAERQMYLAVQAALRGSTASPGGDGCHGRGRR 299
            +E  +T+++D      PIRRSVS++S     + +++   LR      G  G  G  +R
Sbjct: 274 PEERRETKDEDS----LPIRRSVSLNSG----VVVSIADVLREIEDEEGESGGVGTSQR 310

[Close]

BLAST of Carg06214 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-22
Identity = 69/177 (38.98%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 16  FPPPIPS-------HSDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLNWHR------ 75
           FPPP PS        S S+ F  + IA+IGILA+AF+L+SYY  +   C   HR      
Sbjct: 37  FPPP-PSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYC---HRRRHNSS 96

Query: 76  ---IDLLRRLSL------SSRRRRPPPTTHSPPI---HTRGLDESVIRSIPLVQYKNSIP 135
                 + R+S       ++       T  +  I      GLDES+I+SI + +Y+  + 
Sbjct: 97  STSAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYR-KMD 156

Query: 136 RGKTSSECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSST 168
               SS+CSVCLSEF E+E++R++P C+H FH+ CID WL+++ NCPLCR  I +S+
Sbjct: 157 GFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of Carg06214 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-20
Identity = 61/169 (36.09%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 12  YLPPFPPPIPSH-------SDSTSFPIIAIAIIGILATAFLLLSYYVFVINCCLN----- 71
           Y+   PPPI          + + +   + IAI GI ATAFLL +YY  V   C N     
Sbjct: 34  YINFSPPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNE 93

Query: 72  ----WHRIDLLRRLSLSSRRRRPPPTTHSPPIHTRGLDESVIRSIPLVQYKNSIPRGK-T 131
                 R D++  L ++S  R       +    T GLD+++I+ I   + K      K  
Sbjct: 94  AASESGRSDII--LDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKIN 153

Query: 132 SSECSVCLSEFGEDETVRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTI 164
            ++CS+CL EF EDE++R++P C+H FH+ CID WL+++ NCPLCR  I
Sbjct: 154 GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKI 200

The following BLAST results are available for this feature:

BLAST of Carg06214 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028833.1	6.5e-184	100.00	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022942390.1	2.5e-180	98.45	RING-H2 finger protein ATL16 [Cucurbita moschata]	[more]
XP_023540628.1	4.1e-178	97.83	RING-H2 finger protein ATL16 [Cucurbita pepo subsp. pepo]	[more]
XP_022975064.1	3.2e-175	96.28	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]
XP_038877360.1	1.0e-144	80.43	RING-H2 finger protein ATL16 [Benincasa hispida]	[more]

BLAST of Carg06214 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSW9	4.6e-76	50.00	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	2.6e-63	44.44	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LF64	4.4e-26	31.10	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q7XLY8	6.0e-23	30.53	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9SRQ8	7.3e-21	38.98	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of Carg06214 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW76	1.2e-180	98.45	RING-H2 finger protein ATL16 OS=Cucurbita moschata OX=3662 GN=LOC111447447 PE=4 ...	[more]
A0A6J1IJC3	1.6e-175	96.28	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111474033 PE...	[more]
A0A5D3D010	1.5e-141	80.12	RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AWQ9	1.5e-141	80.12	RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103483603 PE=4 SV=1	[more]
A0A0A0L8B0	6.8e-139	78.29	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G135640 P...	[more]

BLAST of Carg06214 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	3.3e-77	50.00	RING/U-box superfamily protein	[more]
AT1G04360.1	1.9e-64	44.44	RING/U-box superfamily protein	[more]
AT5G17600.1	3.1e-27	31.10	RING/U-box superfamily protein	[more]
AT3G03550.1	5.2e-22	38.98	RING/U-box superfamily protein	[more]
AT4G17905.1	3.7e-20	36.09	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..159 e-value: 1.2E-6 score: 38.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 e-value: 9.5E-13 score: 48.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..160 score: 12.282736
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 81..166 e-value: 7.2E-22 score: 78.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..228
None	No IPR available	PANTHER	PTHR46913:SF1	RING-H2 FINGER PROTEIN ATL16	coord: 18..313
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 117..160 e-value: 5.05849E-17 score: 71.5641
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 117..166
IPR044600	RING-H2 finger protein ATL1/ATL16	PANTHER	PTHR46913	RING-H2 FINGER PROTEIN ATL16	coord: 18..313

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06214-RA	Carg06214-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity