Carg06186 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06186
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Location	Carg_Chr06: 8616028 .. 8619149 (-)
RNA-Seq Expression	Carg06186
Synteny	Carg06186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCACTTCCCAAAATCATCTTCAAATCTTCTGAAATTAGCGCTACAGCGTTCTCGAATCGGAGTATTCCTGGAATCAATGGAATCTCCGCCGCCAAGTTGCTCGGGAAATCGGCGAGGGGAAGCCGCTTACGGCGTCTCAATGCGGCTGGATTGTCCGAGATTGAACCCGACTTAAACGAAGATCCAGTAGATCGTTGGGAGACTAACAGTGTCAGCGCTGTATGAATCGCTCTCCTGTCCTCTCATTGTGCCTCTTTTATCTTGCTGATTTTTTTAACAATTTTGTGTTTCGTTTCAGGAAGATTTTGAGTATGGAGTGTACGATGGGCATCACACTTACTTTGAGGGCGAGAAAAAAGGTTCGTTCATTAACATATCTTTGAAATTTGAGTGTTAGAATCTAGATGAACTAGTTTCTGTTTTGGATGAAGTCTTCTGTTTAGGTTGGGTGGAATCTGGATTCAATATTTGGAGGTGGTTCTTGATTTTTGGAGCCCTTGGCTCTGTGAATTCGCTGTCTGAATTCCAGTTATATGAAAATGTGGTTAAGAAAAAACAGAAATGTAATTGTAACTGTAGGTTCTGAATTAGAATCCCAAGCTTGGAATTTAGCTTTCCCGTGAGTCTTTAAAGATCAATTTCGTGAGTTATGGAATCAAGATTTCCCATCTCGCACTGCCATCATAATTTGGCCAAGATGAAACTGTTTATCATCAATCTCACTCATAATGTATAACAAATCACCTTTAGCATAGTGAAAAGTGTTTTAATCCACCATTAAAACACTTCAAAGTTTCTCACGATGTTTGGTTATATGGCTAGAAAAAGATTCTAAAAATTTAAAAAACACTTCAAACCAAGGAAGAACTAATGTTTTGATCTGCACTAACTTCGAAAGTTATCCCGAACTCACTTTCAGCCGGTCTAATTGAGAAGTCGACGGTAGCTATGCTATAGATTTTGTACCTCTATAAGCAGTATCGATTATTCCATTGTTCTTTGAAGTAGTAACCACCTAGTTTTCGTACCATGGATATTCCTCGTTAGGAATGGTTGGATGAAAAGAAAAGTCTCACGTCGGCTAATTTAGGGAATGATCATGGGTTTATAATTTAGGGAAGCCCAAAGCAAATCCATGAGAGTTTATGTTCAAAGTGGACAATATCATACCATTGCGGAGAGTCGTGTTCATCTAACATAGTATCAGAGAGCCATGTCAATAGAATCCTCAAATGTTTAACAAAGGACTCCAAATGGAGGCTCTTCGAAGACATAGTAAAAAAGGACTAAGACTCCAAAAGAAAAGAAGCCGTACTTTGTTCGAGGGGAGGTGTTGGATGAAAAGAAAAGTTCCACGTCGGCTAATTTAGGGAATGATCATGGGTTTATAATCTAGGAATATTTCAAAATCATTTGGGCAGTAACTTCTGGTACTGATTACTTTTCACTGGCAAGTTCTTCTCAGGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCTCCAACAGGCTTTCAGGGTAAACCATTGTCACTCTTAAACAATTCAATCCTCTGACTTCAACACTCGGTTCGTATCTTCACATTTGACATATTTGGCAGGCTTCATCTCTTGGCTCTTCTTACCAGTAGTTGCCGCTGCAATGTACTTCAATGTTCCGGTAACTTCGAATTAGATCTTCGAACGCCATCGATATCTTTCTGTTAAGAATGAGAAATAGAAATAGAATTGGGATCGAAAGTATGATCTTCATTCATGTTTACCACGTTTAAATAGGATACAAACTATCAACTAATACCTAAAAATAGAAAAAATATATATCTAACTAAATCTAGTAAATAAATAAAATATACGGTTAATCAAATCTATACTAACAACTCCCTAAATATTTGATATATATTCTAACTAATTATCACCGCAAAATATCCTCTTAATACTTTCTTCCCTACTTTTGGGGACGCTATGTTCTTAATGGGGACTGTGTTTCAGGGGGAGTATATATACATTGGAGCAGCTGTGTTTACAATAGTATTCTGCATAATTGAAATGGACAAACCAGACCAACCACACAACTTTGAACCTCAAATATATAACATGGAGCGCGGGGCTCGTGACAAGTTGATATCAGATTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGACTTCACTGTGAAGAATGATGATATAACGAAGAGATGATTGCCGACTGCTCCTCAGTATTGTAATGTAAGTGAGAACTCCTTATCCAAATTTTTATGAAAAGATATATATAGTGGATGTAAATTGTAATTATGACATGAACTTATTGTCAACCGTACAGCTTGAAAATTTCTCTTGTTCTTTGCAGCTCTGAATGAATGATGTTTTCATTTGAAGTATTGAAGTAAATCTCTATGGAGATAAAGAACTCTCCTAGTTTTGTGGTTCTGTTAGTTTATAGTTCATTGATCTGAATCTCACTCATTTCTTTCATGTTCAGGAGAACTTGATGATACAGGAAAATATGAACAAAAAATAAGCATAAAAATGTCCCTACCAGAGTTTCAAATTCTTAAGGTTAGAAATCATCCTGCAAATTTAATTACATTACATCCAAAAGTTCAAACATTGCTCTATTTTGCAGGCTTGTCTAGGAATTGGGCTGAAATAAACAAAAAAAATTGGGCTTAAAAGGGTGGTATTAGACATGGGCTTTCATATATATATTTTCATGGACAACACGGCTATTCCGCATCCCTGGGAGCAAATGGATTCTATACGACGCCTTTCCAATCTTGTGAGTAATTTCGATTGGTCCATAGTATTTTCTCACCGGTCTTCGACTTGTTGTTTTTTTATCTCGGAGTTGATCTGACCTCAACTTGATCAGAACTCTCTCCCCTTCTTGAAACTATCGTGGTCGACGCTTTCGATCGACCCTTCTCTTTCTCTGTCTTGATGGTACTTCTACGTGACCATGTGTTGTTTTTGAGGTTTGTCTCTGTCTCCCTCCCTTAGCGGCAGTGTTGGCTTGATGTCTTTCTCTAACCCTTGGGTGATCATTAACCATGGTA

mRNA sequence

ATGGCGCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCACTTCCCAAAATCATCTTCAAATCTTCTGAAATTAGCGCTACAGCGTTCTCGAATCGGAGTATTCCTGGAATCAATGGAATCTCCGCCGCCAAGTTGCTCGGGAAATCGGCGAGGGGAAGCCGCTTACGGCGTCTCAATGCGGCTGGATTGTCCGAGATTGAACCCGACTTAAACGAAGATCCAGTAGATCGTTGGGAGACTAACAGTGTCAGCGCTGAAGATTTTGAGTATGGAGTGTACGATGGGCATCACACTTACTTTGAGGGCGAGAAAAAAGGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCTCCAACAGGCTTTCAGGGCTTCATCTCTTGGCTCTTCTTACCAGTAGTTGCCGCTGCAATGTACTTCAATGTTCCGGGGGAGTATATATACATTGGAGCAGCTGTGTTTACAATAGTATTCTGCATAATTGAAATGGACAAACCAGACCAACCACACAACTTTGAACCTCAAATATATAACATGGAGCGCGGGGCTCGTGACAAGTTGATATCAGATTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGACTTCACTGTGAAGAATGATGATATAACGAAGAGATGATTGCCGACTGCTCCTCAGTATTGTAATGAGAACTTGATGATACAGGAAAATATGAACAAAAAATAAGCATAAAAATGTCCCTACCAGAGTTTCAAATTCTTAAGGCTTGTCTAGGAATTGGGCTGAAATAAACAAAAAAAATTGGGCTTAAAAGGGTGGTATTAGACATGGGCTTTCATATATATATTTTCATGGACAACACGGCTATTCCGCATCCCTGGGAGCAAATGGATTCTATACGACGCCTTTCCAATCTTGTGAGTAATTTCGATTGGTCCATAGTATTTTCTCACCGGTCTTCGACTTGTTGTTTTTTTATCTCGGAGTTGATCTGACCTCAACTTGATCAGAACTCTCTCCCCTTCTTGAAACTATCGTGGTCGACGCTTTCGATCGACCCTTCTCTTTCTCTGTCTTGATGGTACTTCTACGTGACCATGTGTTGTTTTTGAGGTTTGTCTCTGTCTCCCTCCCTTAGCGGCAGTGTTGGCTTGATGTCTTTCTCTAACCCTTGGGTGATCATTAACCATGGTA

Coding sequence (CDS)

ATGGCGCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCACTTCCCAAAATCATCTTCAAATCTTCTGAAATTAGCGCTACAGCGTTCTCGAATCGGAGTATTCCTGGAATCAATGGAATCTCCGCCGCCAAGTTGCTCGGGAAATCGGCGAGGGGAAGCCGCTTACGGCGTCTCAATGCGGCTGGATTGTCCGAGATTGAACCCGACTTAAACGAAGATCCAGTAGATCGTTGGGAGACTAACAGTGTCAGCGCTGAAGATTTTGAGTATGGAGTGTACGATGGGCATCACACTTACTTTGAGGGCGAGAAAAAAGGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCTCCAACAGGCTTTCAGGGCTTCATCTCTTGGCTCTTCTTACCAGTAGTTGCCGCTGCAATGTACTTCAATGTTCCGGGGGAGTATATATACATTGGAGCAGCTGTGTTTACAATAGTATTCTGCATAATTGAAATGGACAAACCAGACCAACCACACAACTTTGAACCTCAAATATATAACATGGAGCGCGGGGCTCGTGACAAGTTGATATCAGATTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGACTTCACTGTGAAGAATGATGATATAACGAAGAGATGA

Protein sequence

MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLNAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR

Homology

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BLAST of Carg06186 vs. NCBI nr
Match: KAG7028861.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.1 bits (1172), Expect = 1.8e-124
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of Carg06186 vs. NCBI nr
Match: XP_022974431.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022974433.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucurbita maxima] >XP_022974434.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_023540737.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023540738.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MALCSSLPVLSFNPLPKIIFKSS ISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of Carg06186 vs. NCBI nr
Match: XP_022948649.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata] >XP_022948658.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 451.4 bits (1160), Expect = 4.4e-123
Identity = 221/223 (99.10%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MALCSSLPVLSFNPLPKIIFKSS I ATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGIRATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of Carg06186 vs. NCBI nr
Match: KAG6597401.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.1 bits (1115), Expect = 7.3e-118
Identity = 216/223 (96.86%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MALCSSLPVLSFNPLPKIIFKSS ISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQGFISWLFLPVVAAAM     GEYIYIGAA FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAM-----GEYIYIGAAAFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 218

[Close]

BLAST of Carg06186 vs. NCBI nr
Match: XP_038878594.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 410.6 bits (1054), Expect = 8.6e-111
Identity = 200/222 (90.09%), Postives = 208/222 (93.69%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MA CSSLPVLSFNP+PKIIFKSSEISATAFSN++IP  NGISA+KLLG   R S  RRLN
Sbjct: 1   MAPCSSLPVLSFNPIPKIIFKSSEISATAFSNQTIPVSNGISASKLLGILTRRSLSRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIE DLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIELDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFN+PGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGVISWLFLPAVAAGMYFNIPGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKN+DITK
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNNDITK 222

[Close]

BLAST of Carg06186 vs. ExPASy Swiss-Prot
Match: Q9FG89 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB5 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.2e-72
Identity = 126/178 (70.79%), Postives = 152/178 (85.39%), Query Frame = 0


Query: 48  GKSARGSRLRRL-NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGE-K 107
           GKS R  +L +L +AAGLS+IEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +
Sbjct: 35  GKSGRRLKLAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQ 94

Query: 108 KGTFWGAIADDIAAVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCII 167
           KGTFWGAIADDIAAV    GFQG IS +FLP +A  MYF+ PGEY++IGAA+FT+VFCII
Sbjct: 95  KGTFWGAIADDIAAVDQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCII 154

Query: 168 EMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           EMDKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI  R
Sbjct: 155 EMDKPDQPHNFEPQIYKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDIATR 212

[Close]

BLAST of Carg06186 vs. ExPASy TrEMBL
Match: A0A6J1IBC3 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473099 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.6e-124
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MALCSSLPVLSFNPLPKIIFKSS ISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of Carg06186 vs. ExPASy TrEMBL
Match: A0A6J1GAI7 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452262 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.1e-123
Identity = 221/223 (99.10%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MALCSSLPVLSFNPLPKIIFKSS I ATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGIRATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of Carg06186 vs. ExPASy TrEMBL
Match: A0A0A0L8H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 9.3e-111
Identity = 201/223 (90.13%), Postives = 207/223 (92.83%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSE-ISATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60
           MALCSSLPVLSFNP+PKIIFKSSE ISAT FS R I G NGIS++KLLGK  R S   RL
Sbjct: 1   MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60

Query: 61  NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
           NAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61  NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120

Query: 121 VGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQ 180
           VGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180

Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
           IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223

[Close]

BLAST of Carg06186 vs. ExPASy TrEMBL
Match: A0A5A7U0K2 (Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00970 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.5e-108
Identity = 196/222 (88.29%), Postives = 204/222 (91.89%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MA  SSLPVLSFNP+PKIIF SSEI A  FS ++I G NGIS++KLLGK  R S  RRLN
Sbjct: 1   MASSSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIQGSNGISSSKLLGKLTRRSLSRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of Carg06186 vs. ExPASy TrEMBL
Match: A0A1S3AXF4 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483655 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.9e-108
Identity = 196/222 (88.29%), Postives = 204/222 (91.89%), Query Frame = 0


Query: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60
           MA  SSLPVLSFNP+PKIIF SSEI A  FS ++I G NGIS++KLLGK  R S  RRLN
Sbjct: 1   MASSSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIRGSNGISSSKLLGKLTRRSLSRRLN 60

Query: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120
           AAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of Carg06186 vs. TAIR 10
Match: AT5G43750.1 (NAD(P)H dehydrogenase 18 )

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-73
Identity = 126/178 (70.79%), Postives = 152/178 (85.39%), Query Frame = 0


Query: 48  GKSARGSRLRRL-NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGE-K 107
           GKS R  +L +L +AAGLS+IEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +
Sbjct: 35  GKSGRRLKLAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQ 94

Query: 108 KGTFWGAIADDIAAVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCII 167
           KGTFWGAIADDIAAV    GFQG IS +FLP +A  MYF+ PGEY++IGAA+FT+VFCII
Sbjct: 95  KGTFWGAIADDIAAVDQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCII 154

Query: 168 EMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 224
           EMDKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI  R
Sbjct: 155 EMDKPDQPHNFEPQIYKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDIATR 212

The following BLAST results are available for this feature:

BLAST of Carg06186 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028861.1	1.8e-124	100.00	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ...	[more]
XP_022974431.1	1.2e-123	99.55	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbit...	[more]
XP_022948649.1	4.4e-123	99.10	photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata]...	[more]
KAG6597401.1	7.3e-118	96.86	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ...	[more]
XP_038878594.1	8.6e-111	90.09	photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg06186 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG89	2.2e-72	70.79	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg06186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBC3	5.6e-124	99.55	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurb...	[more]
A0A6J1GAI7	2.1e-123	99.10	photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschat...	[more]
A0A0A0L8H7	9.3e-111	90.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1	[more]
A0A5A7U0K2	1.5e-108	88.29	Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AXF4	1.9e-108	88.29	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumi...	[more]

BLAST of Carg06186 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43750.1	1.5e-73	70.79	NAD(P)H dehydrogenase 18	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034569	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic	PANTHER	PTHR36399	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 5, CHLOROPLASTIC	coord: 1..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06186-RA	Carg06186-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane