Carg06037 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06037
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 21621582 .. 21622266 (-)
RNA-Seq ExpressionCarg06037
SyntenyCarg06037
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCCCAGCCACAGGAACCGCATCACTTGCATCGTGGGCTTGCTGGACCCAAAGAAATCTGGGTCTTCACAACTAAGAAAATGGGCTTCTCAAAAGCTCATTGGTCTGTTGCGTGGAAAGCCCAATCAAATGGGCTGGTCTCTTACGTGGAAAGCCCAATCCAAGGGGCAGGTCTCTTACGTGGAAAGCCCACTCCAATGGACTGGTCTCTTACATGGAAAGCCCAATCCAATGGGCCGGTCTCTTAAGTGGAAGCCCAAACCAATGGGTAGGTCTCTACGTGGAAAGCCCAATCCAATGGCTTAATCTACAAATATATAAGGATAATTAACGGTAAAATAACACTAAAATACTATATTCAAATACAAAATATAAATATAGTTTATGGATATCCAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACACTTAACCTAACTCTTTCATCTCCCTCTTATTCTTACGCGCGCCACGCCACGCTTCTTCTTCTTCTTCCGTCTTCTTCTTCTTCCTCAAGCCGGCTCTTCCCCTGTTTCAGCTTCTGAGTGTCTCTGTCCTCCGCAGTCTTCTTTCGTACTTCCCGCCGAAGCCTCCTCAGCGGTTTGCGCTGATTTTCTACTCTTTTGTTGTTACTGGTATTCTCTCAATCTCCGTCTCTGTCTTTCTTCTCACTCTATAG

mRNA sequence

TATCCCAGCCACAGGAACCGCATCACTTGCATCGTGGGCTTGCTGGACCCAAAGAAATCTGGGTCTTCACAACTAAGAAAATGGGCTTCTCAAAAGCTCATTGGTCTGTTGCGTGGAAAGCCCAATCAAATGGGCTGGTCTCTTACGTGGAAAGCCCAATCCAAGGGGCAGCTTCTGAGTGTCTCTGTCCTCCGCAGTCTTCTTTCGTACTTCCCGCCGAAGCCTCCTCAGCGGTTTGCGCTGATTTTCTACTCTTTTGTTGTTACTGGTATTCTCTCAATCTCCGTCTCTGTCTTTCTTCTCACTCTATAG

Coding sequence (CDS)

TATCCCAGCCACAGGAACCGCATCACTTGCATCGTGGGCTTGCTGGACCCAAAGAAATCTGGGTCTTCACAACTAAGAAAATGGGCTTCTCAAAAGCTCATTGGTCTGTTGCGTGGAAAGCCCAATCAAATGGGCTGGTCTCTTACGTGGAAAGCCCAATCCAAGGGGCAGCTTCTGAGTGTCTCTGTCCTCCGCAGTCTTCTTTCGTACTTCCCGCCGAAGCCTCCTCAGCGGTTTGCGCTGATTTTCTACTCTTTTGTTGTTACTGGTATTCTCTCAATCTCCGTCTCTGTCTTTCTTCTCACTCTATAG

Protein sequence

YPSHRNRITCIVGLLDPKKSGSSQLRKWASQKLIGLLRGKPNQMGWSLTWKAQSKGQLLSVSVLRSLLSYFPPKPPQRFALIFYSFVVTGILSISVSVFLLTL
Homology
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BLAST of Carg06037 vs. NCBI nr
Match: KAG7033358.1 (hypothetical protein SDJN02_07413, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 5.6e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   YPSHRNRITCIVGLLDPKKSGSSQLRKWASQKLIGLLRGKPNQMGWSLTWKAQSKGQLLS 60
           YPSHRNRITCIVGLLDPKKSGSSQLRKWASQKLIGLLRGKPNQMGWSLTWKAQSKGQLLS
Sbjct: 1   YPSHRNRITCIVGLLDPKKSGSSQLRKWASQKLIGLLRGKPNQMGWSLTWKAQSKGQLLS 60

Query: 61  VSVLRSLLSYFPPKPPQRFALIFYSFVVTGILSISVSVFLLTL 104
           VSVLRSLLSYFPPKPPQRFALIFYSFVVTGILSISVSVFLLTL
Sbjct: 61  VSVLRSLLSYFPPKPPQRFALIFYSFVVTGILSISVSVFLLTL 103

The following BLAST results are available for this feature:
BLAST of Carg06037 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033358.15.6e-49100.00hypothetical protein SDJN02_07413, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg06037 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06037 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06037 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06037-RACarg06037-RAmRNA