Carg06006 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg06006
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Maternal effect embryo arrest
Location	Carg_Chr04: 21504590 .. 21505108 (+)
RNA-Seq Expression	Carg06006
Synteny	Carg06006

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGACCGGCACCAACATTCACATGTCCGCCCTAGACGGCATCGTAAACGTCAATTCCATGTTCACTCTGGCCGTCTTCTTAGGCTTAGCCTGGAACCCCAACGACCCGACGAACAATCTGGTCGAAAGCCCTAATTGCTTGGCCGCCCCCAACGTCGCCGAGAATCTGGTAGCCTTCCATGTCTATTCCTTCAGCTCCTTCCTCTTCTCCAGCTTAATCGCCCTCGGCCTTAAGCAGGCCATCCGGATCTCCAAAACCCCCTTCTATCACCCCACCGAGTTCTTCGTTCGCGTCAACAAAACGGCCGTCCGAATCGGGATGCTGGTTTCCGGAATCGGCTCGGTTTGCGGCTGTGGATTCCTCATGATGGCGCTTATCAATGTTGTCCAGATCAAACTTGGTACTCTGAGCTGCGGCAGCTCTCAGACTTACGCGGCGGTGGTTCCGCTCGTGATTTTGGTTCCATTTGCCCTTGTGATTTACATCTGCCTTGTTTCTTACGCTTTTATCAATTAG

mRNA sequence

ATGCCGACCGGCACCAACATTCACATGTCCGCCCTAGACGGCATCGTAAACGTCAATTCCATGTTCACTCTGGCCGTCTTCTTAGGCTTAGCCTGGAACCCCAACGACCCGACGAACAATCTGGTCGAAAGCCCTAATTGCTTGGCCGCCCCCAACGTCGCCGAGAATCTGGTAGCCTTCCATGTCTATTCCTTCAGCTCCTTCCTCTTCTCCAGCTTAATCGCCCTCGGCCTTAAGCAGGCCATCCGGATCTCCAAAACCCCCTTCTATCACCCCACCGAGTTCTTCGTTCGCGTCAACAAAACGGCCGTCCGAATCGGGATGCTGGTTTCCGGAATCGGCTCGGTTTGCGGCTGTGGATTCCTCATGATGGCGCTTATCAATGTTGTCCAGATCAAACTTGGTACTCTGAGCTGCGGCAGCTCTCAGACTTACGCGGCGGTGGTTCCGCTCGTGATTTTGGTTCCATTTGCCCTTGTGATTTACATCTGCCTTGTTTCTTACGCTTTTATCAATTAG

Coding sequence (CDS)

ATGCCGACCGGCACCAACATTCACATGTCCGCCCTAGACGGCATCGTAAACGTCAATTCCATGTTCACTCTGGCCGTCTTCTTAGGCTTAGCCTGGAACCCCAACGACCCGACGAACAATCTGGTCGAAAGCCCTAATTGCTTGGCCGCCCCCAACGTCGCCGAGAATCTGGTAGCCTTCCATGTCTATTCCTTCAGCTCCTTCCTCTTCTCCAGCTTAATCGCCCTCGGCCTTAAGCAGGCCATCCGGATCTCCAAAACCCCCTTCTATCACCCCACCGAGTTCTTCGTTCGCGTCAACAAAACGGCCGTCCGAATCGGGATGCTGGTTTCCGGAATCGGCTCGGTTTGCGGCTGTGGATTCCTCATGATGGCGCTTATCAATGTTGTCCAGATCAAACTTGGTACTCTGAGCTGCGGCAGCTCTCAGACTTACGCGGCGGTGGTTCCGCTCGTGATTTTGGTTCCATTTGCCCTTGTGATTTACATCTGCCTTGTTTCTTACGCTTTTATCAATTAG

Protein sequence

MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN

Homology

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BLAST of Carg06006 vs. NCBI nr
Match: XP_022990564.1 (uncharacterized protein LOC111487406 [Cucurbita maxima] >XP_023515774.1 uncharacterized protein LOC111779812 [Cucurbita pepo subsp. pepo] >KAG6602640.1 hypothetical protein SDJN03_07873, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033327.1 hypothetical protein SDJN02_07382, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF
Sbjct: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 172

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BLAST of Carg06006 vs. NCBI nr
Match: XP_022962637.1 (uncharacterized protein LOC111463051 [Cucurbita moschata])

HSP 1 Score: 332.0 bits (850), Expect = 3.0e-87
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLA PNVAENLVAF
Sbjct: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLATPNVAENLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 172

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BLAST of Carg06006 vs. NCBI nr
Match: XP_038885575.1 (uncharacterized protein LOC120075905 [Benincasa hispida])

HSP 1 Score: 315.5 bits (807), Expect = 2.9e-82
Identity = 160/172 (93.02%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MP GT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDPTNNL++SPNCLA P+VA NLVAF
Sbjct: 1   MPAGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLIQSPNCLAGPSVAANLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISK+PFYHPTEFFVRVNKTAVR+GMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKSPFYHPTEFFVRVNKTAVRVGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLG LSCGSSQT+AAVVPLVILVPFALVIYICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGVLSCGSSQTFAAVVPLVILVPFALVIYICLVSYAFIN 172

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BLAST of Carg06006 vs. NCBI nr
Match: XP_022134461.1 (uncharacterized protein LOC111006700 [Momordica charantia])

HSP 1 Score: 314.7 bits (805), Expect = 5.0e-82
Identity = 158/172 (91.86%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MP GT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLV++PNCLAAP++AENLVAF
Sbjct: 54  MPAGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVQNPNCLAAPSIAENLVAF 113

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISK+PFYHPTEFFVRVNK+A+RIGML+SGIGSVCGCG
Sbjct: 114 HVYSFSSFLFSSLIALGLKQAIRISKSPFYHPTEFFVRVNKSALRIGMLISGIGSVCGCG 173

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVILVP AL+IYICLVSYAFIN
Sbjct: 174 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVILVPIALIIYICLVSYAFIN 225

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BLAST of Carg06006 vs. NCBI nr
Match: XP_004138443.1 (uncharacterized protein LOC101208865 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 7.2e-81
Identity = 156/172 (90.70%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDP NNL++SPNCLA P+VA NLV+F
Sbjct: 1   MPTGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPMNNLIQSPNCLAGPSVAANLVSF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRI+K+PFYHPTEFF+RVNKTA+RIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRIAKSPFYHPTEFFIRVNKTALRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVILVP ALV+YICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVILVPIALVVYICLVSYAFIN 172

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BLAST of Carg06006 vs. ExPASy TrEMBL
Match: A0A6J1JSD7 (uncharacterized protein LOC111487406 OS=Cucurbita maxima OX=3661 GN=LOC111487406 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.0e-88
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF
Sbjct: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 172

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BLAST of Carg06006 vs. ExPASy TrEMBL
Match: A0A6J1HD70 (uncharacterized protein LOC111463051 OS=Cucurbita moschata OX=3662 GN=LOC111463051 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLA PNVAENLVAF
Sbjct: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLATPNVAENLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 172

[Close]

BLAST of Carg06006 vs. ExPASy TrEMBL
Match: A0A6J1BXU9 (uncharacterized protein LOC111006700 OS=Momordica charantia OX=3673 GN=LOC111006700 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 158/172 (91.86%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MP GT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLV++PNCLAAP++AENLVAF
Sbjct: 54  MPAGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVQNPNCLAAPSIAENLVAF 113

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISK+PFYHPTEFFVRVNK+A+RIGML+SGIGSVCGCG
Sbjct: 114 HVYSFSSFLFSSLIALGLKQAIRISKSPFYHPTEFFVRVNKSALRIGMLISGIGSVCGCG 173

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVILVP AL+IYICLVSYAFIN
Sbjct: 174 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVILVPIALIIYICLVSYAFIN 225

[Close]

BLAST of Carg06006 vs. ExPASy TrEMBL
Match: A0A0A0KA88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008850 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.5e-81
Identity = 156/172 (90.70%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDP NNL++SPNCLA P+VA NLV+F
Sbjct: 1   MPTGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPMNNLIQSPNCLAGPSVAANLVSF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRI+K+PFYHPTEFF+RVNKTA+RIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRIAKSPFYHPTEFFIRVNKTALRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVILVP ALV+YICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVILVPIALVVYICLVSYAFIN 172

[Close]

BLAST of Carg06006 vs. ExPASy TrEMBL
Match: A0A5D3DL39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001250 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 156/172 (90.70%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAF 60
           MPTGT+IH+SALDGIVNVNSMFTLAVFLGLAWNPNDP NNL++SP+CLA P+VA NLVAF
Sbjct: 1   MPTGTSIHISALDGIVNVNSMFTLAVFLGLAWNPNDPMNNLIQSPSCLAGPSVAANLVAF 60

Query: 61  HVYSFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCG 120
           HVYSFSSFLFSSLIALGLKQAIRISK+PFYHPTEF +RVNKTA+RIGMLVSGIGSVCGCG
Sbjct: 61  HVYSFSSFLFSSLIALGLKQAIRISKSPFYHPTEFLIRVNKTALRIGMLVSGIGSVCGCG 120

Query: 121 FLMMALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAFIN 173
           FLMMALINVVQIKLGTLSCGSSQT+AAVVPLVILVP ALV+YICLVSYAFIN
Sbjct: 121 FLMMALINVVQIKLGTLSCGSSQTFAAVVPLVILVPIALVVYICLVSYAFIN 172

[Close]

BLAST of Carg06006 vs. TAIR 10
Match: AT5G05950.1 (maternal effect embryo arrest 60 )

HSP 1 Score: 224.6 bits (571), Expect = 6.3e-59
Identity = 120/173 (69.36%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 5   TNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVYS 64
           T+IH++ALDGIVNVNS+FTLAVF+GLAWNP DP N+LV  PNC+    +AENLVAFHVYS
Sbjct: 3   TSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVYS 62

Query: 65  FSSFLFSSLIALGLKQAIRISKTPFYH------PTEFFVRVNKTAVRIGMLVSGIGSVCG 124
           F+SFLFSSLIALGLKQA+R++    +H      P  ++  VNKTA+R GM+ SG+GSVCG
Sbjct: 63  FASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYY--VNKTALRFGMVTSGLGSVCG 122

Query: 125 CGFLMMALINVVQIKLGTLSCGSS-QTYAAVVPLVILVPFALVIYICLVSYAF 171
           CGFLM+ALINVVQIKLGTL CG+S  TYAAVVPLVILVP AL IY+ L+ YAF
Sbjct: 123 CGFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAF 173

[Close]

BLAST of Carg06006 vs. TAIR 10
Match: AT3G46890.1 (BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-34
Identity = 98/189 (51.85%), Postives = 127/189 (67.20%), Query Frame = 0


Query: 1   MPTGTNIHMSALDGIVNVNSMFTLAVFLGLAWNPN--DPTNNLVESPN----CLAA--PN 60
           +PT T IH++A+DGIVNVNS+F+LA+FLGL  + N   P ++     +    C++A  P 
Sbjct: 16  LPT-TLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPA 75

Query: 61  VAENLVAFHVYSFSSFLFSSLIALGLKQAIRISKTPFYH---PTEFFV------RVNKTA 120
           +AE LV+ HVYSFS FLFSSLIA+ LKQAIR + T         E  V      RVN  A
Sbjct: 76  LAERLVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNLAA 135

Query: 121 VRIGMLVSGIGSVCGCGFLMMALINVVQIKLGTLSCGSS-QTYAAVVPLVILVPFALVIY 172
           +R+G++ S + SV GCGFL MAL+++VQIKLG L C  S    AA+VPLV+LVP AL+IY
Sbjct: 136 LRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALIIY 195

[Close]

BLAST of Carg06006 vs. TAIR 10
Match: AT3G07510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-32
Identity = 80/166 (48.19%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 5   TNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVYS 64
           T++H+SALDG+VNVNS+FT+AVF+GL+       ++L +  +C A+ +VA+ L+ F V S
Sbjct: 24  TSVHVSALDGLVNVNSLFTIAVFVGLSL-ATPGQHSLEQRSSCDASADVAKKLLVFEVVS 83

Query: 65  FSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLMM 124
           FS FLFSSL+A GLK A+ +  +   +   F   +N   +R GM+ S +GSV GC FLM+
Sbjct: 84  FSFFLFSSLVAQGLKLALNLLNSKDVNEI-FRAHINIKVLRWGMMASAVGSVMGCLFLML 143

Query: 125 ALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAF 171
           +++NV+QI+LG LSCGS     AV  LV LV  AL+IYI    YAF
Sbjct: 144 SMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187

[Close]

BLAST of Carg06006 vs. TAIR 10
Match: AT3G07510.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-32
Identity = 80/166 (48.19%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 5   TNIHMSALDGIVNVNSMFTLAVFLGLAWNPNDPTNNLVESPNCLAAPNVAENLVAFHVYS 64
           T++H+SALDG+VNVNS+FT+AVF+GL+       ++L +  +C A+ +VA+ L+ F V S
Sbjct: 24  TSVHVSALDGLVNVNSLFTIAVFVGLSL-ATPGQHSLEQRSSCDASADVAKKLLVFEVVS 83

Query: 65  FSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLMM 124
           FS FLFSSL+A GLK A+ +  +   +   F   +N   +R GM+ S +GSV GC FLM+
Sbjct: 84  FSFFLFSSLVAQGLKLALNLLNSKDVNEI-FRAHINIKVLRWGMMASAVGSVMGCLFLML 143

Query: 125 ALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAF 171
           +++NV+QI+LG LSCGS     AV  LV LV  AL+IYI    YAF
Sbjct: 144 SMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187

[Close]

BLAST of Carg06006 vs. TAIR 10
Match: AT2G01580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-28
Identity = 70/167 (41.92%), Postives = 113/167 (67.66%), Query Frame = 0


Query: 5   TNIHMSALDGIVNVNSMFTLAVFLGLAWN-PNDPTNNLVESPNCLAAPNVAENLVAFHVY 64
           T++H++ALDGIV+ NS+FT+AVF+G++++ P+D T  L +   C A  +V  +LV F V 
Sbjct: 26  TSVHVTALDGIVSANSLFTVAVFVGISFDQPSDLT--LTDRTECSAGRDVERDLVVFEVI 85

Query: 65  SFSSFLFSSLIALGLKQAIRISKTPFYHPTEFFVRVNKTAVRIGMLVSGIGSVCGCGFLM 124
           SF+ FLFSSL+A G+K AI +  +       F   +N+  +R G++ +  GS+ GC FL+
Sbjct: 86  SFAFFLFSSLVAQGMKLAINLLNSKETDEV-FKANINRDVLRFGVVGAAGGSILGCVFLL 145

Query: 125 MALINVVQIKLGTLSCGSSQTYAAVVPLVILVPFALVIYICLVSYAF 171
           +++++V+Q++LG LSCG++     V+ LV+LV  AL +YI  V Y+F
Sbjct: 146 LSIVDVIQLRLGLLSCGNALAIHTVLVLVVLVSSALSVYIFTVFYSF 189

The following BLAST results are available for this feature:

BLAST of Carg06006 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990564.1	1.0e-87	100.00	uncharacterized protein LOC111487406 [Cucurbita maxima] >XP_023515774.1 uncharac...	[more]
XP_022962637.1	3.0e-87	99.42	uncharacterized protein LOC111463051 [Cucurbita moschata]	[more]
XP_038885575.1	2.9e-82	93.02	uncharacterized protein LOC120075905 [Benincasa hispida]	[more]
XP_022134461.1	5.0e-82	91.86	uncharacterized protein LOC111006700 [Momordica charantia]	[more]
XP_004138443.1	7.2e-81	90.70	uncharacterized protein LOC101208865 [Cucumis sativus]	[more]

BLAST of Carg06006 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg06006 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSD7	5.0e-88	100.00	uncharacterized protein LOC111487406 OS=Cucurbita maxima OX=3661 GN=LOC111487406...	[more]
A0A6J1HD70	1.5e-87	99.42	uncharacterized protein LOC111463051 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A6J1BXU9	2.4e-82	91.86	uncharacterized protein LOC111006700 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0KA88	3.5e-81	90.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008850 PE=4 SV=1	[more]
A0A5D3DL39	1.3e-80	90.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg06006 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05950.1	6.3e-59	69.36	maternal effect embryo arrest 60	[more]
AT3G46890.1	1.8e-34	51.85	BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TA...	[more]
AT3G07510.1	2.2e-32	48.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G07510.2	2.2e-32	48.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G01580.1	4.4e-28	41.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33430	MATERNAL EFFECT EMBRYO ARREST PROTEIN	coord: 3..171
None	No IPR available	PANTHER	PTHR33430:SF7	OS07G0240400 PROTEIN	coord: 3..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06006-RA	Carg06006-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008289	lipid binding